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August 8, 2023 07:55
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(partial) EasyBuild log for failed build of /tmp/eb-xxxsyagw/files_pr18481/p/pdsh/pdsh-2.34-GCCcore-12.3.0.eb (PR(s) #18481)
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| == 2023-08-08 09:55:47,482 easyblock.py:313 INFO This is EasyBuild 4.7.2 (framework: 4.7.2, easyblocks: 4.7.2) on host node3558.doduo.os. | |
| == 2023-08-08 09:55:47,482 easyblock.py:319 INFO This is easyblock ConfigureMake from module easybuild.easyblocks.generic.configuremake (/user/gent/461/vsc46128/.local/lib/python3.10/site-packages/easybuild/easyblocks/generic/configuremake.py) | |
| == 2023-08-08 09:55:47,482 easyblock.py:1040 INFO Build dir set to /tmp/vsc46128/pdsh/2.34/GCCcore-12.3.0 | |
| == 2023-08-08 09:55:47,482 easyblock.py:1097 INFO Software install dir set to /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/pdsh/2.34-GCCcore-12.3.0 | |
| == 2023-08-08 09:55:47,482 easyblock.py:1102 INFO Module install dir set to /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/modules/all | |
| == 2023-08-08 09:55:47,482 easyblock.py:288 INFO Init completed for application name pdsh version 2.34 | |
| == 2023-08-08 09:55:47,482 easyblock.py:4200 INFO Obtained application instance of for pdsh (easyblock: ConfigureMake) | |
| == 2023-08-08 09:55:47,482 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-08-08 09:55:47,482 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='pdsh', github_account='pdsh', module_name='pdsh/2.34-GCCcore-12.3.0', name='pdsh', nameletter='p', nameletterlower='p', namelower='pdsh', toolchain_name='GCCcore', toolchain_version='12.3.0', version='2.34', version_major='2', version_major_minor='2.34', version_minor='34', versionprefix='', versionsuffix='' | |
| == 2023-08-08 09:55:47,483 one.py:180 INFO Skipping reformatting value for parameter 'toolchain' | |
| == 2023-08-08 09:55:47,484 filetools.py:1914 INFO Creating directory /tmp/eb-xxxsyagw/reprod_20230808095547_118779 (parents: True, set_gid: False, sticky: False) | |
| == 2023-08-08 09:55:47,484 easyblock.py:4454 INFO Dumped easyconfig instance to /tmp/eb-xxxsyagw/reprod_20230808095547_118779/pdsh-2.34-GCCcore-12.3.0.eb | |
| == 2023-08-08 09:55:47,485 filetools.py:1914 INFO Creating directory /tmp/eb-xxxsyagw/reprod_20230808095547_118779/easyblocks (parents: True, set_gid: False, sticky: False) | |
| == 2023-08-08 09:55:47,517 filetools.py:2427 INFO /user/gent/461/vsc46128/.local/lib/python3.10/site-packages/easybuild/easyblocks/generic/configuremake.py copied to /tmp/eb-xxxsyagw/reprod_20230808095547_118779/easyblocks/configuremake.py | |
| == 2023-08-08 09:55:47,518 easyblock.py:4434 INFO Dumped easyblock configuremake.py required for reproduction to /tmp/eb-xxxsyagw/reprod_20230808095547_118779/easyblocks | |
| == 2023-08-08 09:55:47,519 easyblock.py:2209 INFO Number of iterations to perform for central part of installation procedure: 1 | |
| == 2023-08-08 09:55:47,519 build_log.py:267 INFO building and installing pdsh/2.34-GCCcore-12.3.0... | |
| == 2023-08-08 09:55:47,521 filetools.py:2007 INFO Lock /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/.locks/_data_gent_461_vsc46128_easybuild_RHEL8_zen2-ib_software_pdsh_2.34-GCCcore-12.3.0.lock does not exist | |
| == 2023-08-08 09:55:47,521 filetools.py:1948 INFO Creating lock at /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/.locks/_data_gent_461_vsc46128_easybuild_RHEL8_zen2-ib_software_pdsh_2.34-GCCcore-12.3.0.lock... | |
| == 2023-08-08 09:55:47,521 filetools.py:1914 INFO Creating directory /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/.locks/_data_gent_461_vsc46128_easybuild_RHEL8_zen2-ib_software_pdsh_2.34-GCCcore-12.3.0.lock (parents: True, set_gid: False, sticky: False) | |
| == 2023-08-08 09:55:47,522 filetools.py:1957 INFO Lock created: /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/.locks/_data_gent_461_vsc46128_easybuild_RHEL8_zen2-ib_software_pdsh_2.34-GCCcore-12.3.0.lock | |
| == 2023-08-08 09:55:47,522 build_log.py:267 INFO fetching files... | |
| == 2023-08-08 09:55:47,524 easyblock.py:3926 INFO Starting fetch step | |
| == 2023-08-08 09:55:47,524 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-08-08 09:55:47,524 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='pdsh', builddir='/tmp/vsc46128/pdsh/2.34/GCCcore-12.3.0', github_account='pdsh', installdir='/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/pdsh/2.34-GCCcore-12.3.0', module_name='pdsh/2.34-GCCcore-12.3.0', name='pdsh', nameletter='p', nameletterlower='p', namelower='pdsh', start_dir='None', toolchain_name='GCCcore', toolchain_version='12.3.0', version='2.34', version_major='2', version_major_minor='2.34', version_minor='34', versionprefix='', versionsuffix='' | |
| == 2023-08-08 09:55:47,524 easyblock.py:3934 INFO Running method fetch_step part of step fetch | |
| == 2023-08-08 09:55:47,524 easyblock.py:2331 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2023-08-08 09:55:47,525 easyblock.py:802 INFO Considering directory in which easyconfig file is located when searching for pdsh-2.34.tar.gz: /tmp/eb-xxxsyagw/files_pr18481/p/pdsh | |
| == 2023-08-08 09:55:47,525 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/461/vsc46128/.local/bin/eb | |
| == 2023-08-08 09:55:47,525 tools.py:287 INFO Also considering installation prefix /user/gent/461/vsc46128/.local (determined via path to 'eb' script)... | |
| == 2023-08-08 09:55:47,532 easyblock.py:844 INFO Found file pdsh-2.34.tar.gz at /user/gent/461/vsc46128/.local/easybuild/sources/p/pdsh/pdsh-2.34.tar.gz | |
| == 2023-08-08 09:55:47,532 easyblock.py:496 INFO Added sources: [{'name': 'pdsh-2.34.tar.gz', 'path': '/user/gent/461/vsc46128/.local/easybuild/sources/p/pdsh/pdsh-2.34.tar.gz', 'cmd': None, 'checksum': 'b47b3e4662736ef44b6fe86e3d380f95e591863e69163aa0592e9f9f618521e9', 'finalpath': '/tmp/vsc46128/pdsh/2.34/GCCcore-12.3.0'}] | |
| == 2023-08-08 09:55:47,532 easyblock.py:2374 INFO no patches provided | |
| == 2023-08-08 09:55:47,556 easyblock.py:2384 INFO md5 checksum for /user/gent/461/vsc46128/.local/easybuild/sources/p/pdsh/pdsh-2.34.tar.gz: 75916c61a469303ff859605b1375d391 | |
| == 2023-08-08 09:55:47,556 easyblock.py:2384 INFO sha256 checksum for /user/gent/461/vsc46128/.local/easybuild/sources/p/pdsh/pdsh-2.34.tar.gz: b47b3e4662736ef44b6fe86e3d380f95e591863e69163aa0592e9f9f618521e9 | |
| == 2023-08-08 09:55:47,557 easyblock.py:2419 INFO Checking dirs that need to be created: ['/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/pdsh/2.34-GCCcore-12.3.0', '/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/modules/all/pdsh', '/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/modules/tools/pdsh'] | |
| == 2023-08-08 09:55:47,570 configuremake.py:94 INFO config.guess version: 2018-08-29 (last updated: 2023-06-26T18:39:16.258871, SHA256 checksum: c02eb9cc55c86cfd1e9a794e548d25db5c9539e7b2154beb649bc6e2cbffc74c) | |
| == 2023-08-08 09:55:47,570 configuremake.py:150 INFO Found config.guess at /user/gent/461/vsc46128/.local/easybuild/sources/generic/eb_v4.7.2/ConfigureMake/config.guess | |
| == 2023-08-08 09:55:47,570 build_log.py:267 INFO creating build dir, resetting environment... | |
| == 2023-08-08 09:55:47,572 easyblock.py:3926 INFO Starting ready step | |
| == 2023-08-08 09:55:47,572 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-08-08 09:55:47,572 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='pdsh', builddir='/tmp/vsc46128/pdsh/2.34/GCCcore-12.3.0', github_account='pdsh', installdir='/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/pdsh/2.34-GCCcore-12.3.0', module_name='pdsh/2.34-GCCcore-12.3.0', name='pdsh', nameletter='p', nameletterlower='p', namelower='pdsh', start_dir='None', toolchain_name='GCCcore', toolchain_version='12.3.0', version='2.34', version_major='2', version_major_minor='2.34', version_minor='34', versionprefix='', versionsuffix='' | |
| == 2023-08-08 09:55:47,572 easyblock.py:3934 INFO Running method check_readiness_step part of step ready | |
| == 2023-08-08 09:55:47,574 run.py:236 INFO running cmd: ulimit -u | |
| == 2023-08-08 09:55:47,584 easyblock.py:2228 INFO Setting parallelism: 6 | |
| == 2023-08-08 09:55:47,666 easyblock.py:2280 WARNING Loaded modules detected: ['env/vsc/doduo', 'env/slurm/doduo', 'env/software/doduo', 'cluster/doduo', 'GCCcore/12.2.0', 'zlib/1.2.12-GCCcore-12.2.0', 'binutils/2.39-GCCcore-12.2.0', 'GCC/12.2.0', 'bzip2/1.0.8-GCCcore-12.2.0', 'ncurses/6.3-GCCcore-12.2.0', 'libreadline/8.2-GCCcore-12.2.0', 'Tcl/8.6.12-GCCcore-12.2.0', 'SQLite/3.39.4-GCCcore-12.2.0', 'XZ/5.2.7-GCCcore-12.2.0', 'GMP/6.2.1-GCCcore-12.2.0', 'libffi/3.4.4-GCCcore-12.2.0', 'OpenSSL/1.1', 'Python/3.10.8-GCCcore-12.2.0', 'sagecipher/1.0.0-GCC-12.2.0-Python-3.10.8'] | |
| == 2023-08-08 09:55:47,667 easyblock.py:2253 INFO Removing existing module file /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/modules/all/pdsh/2.34-GCCcore-12.3.0.lua | |
| == 2023-08-08 09:55:47,669 easyblock.py:3934 INFO Running method make_builddir part of step ready | |
| == 2023-08-08 09:55:47,669 filetools.py:1914 INFO Creating directory /tmp/vsc46128/pdsh/2.34/GCCcore-12.3.0 (parents: True, set_gid: False, sticky: False) | |
| == 2023-08-08 09:55:47,669 easyblock.py:3934 INFO Running method reset_env part of step ready | |
| == 2023-08-08 09:55:47,670 easyblock.py:3934 INFO Running method handle_iterate_opts part of step ready | |
| == 2023-08-08 09:55:47,670 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-08-08 09:55:47,670 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='pdsh', builddir='/tmp/vsc46128/pdsh/2.34/GCCcore-12.3.0', github_account='pdsh', installdir='/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/pdsh/2.34-GCCcore-12.3.0', module_name='pdsh/2.34-GCCcore-12.3.0', name='pdsh', nameletter='p', nameletterlower='p', namelower='pdsh', parallel='6', start_dir='None', toolchain_name='GCCcore', toolchain_version='12.3.0', version='2.34', version_major='2', version_major_minor='2.34', version_minor='34', versionprefix='', versionsuffix='' | |
| == 2023-08-08 09:55:47,670 build_log.py:267 INFO unpacking... | |
| == 2023-08-08 09:55:47,672 easyblock.py:3926 INFO Starting source step | |
| == 2023-08-08 09:55:47,672 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-08-08 09:55:47,672 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='pdsh', builddir='/tmp/vsc46128/pdsh/2.34/GCCcore-12.3.0', github_account='pdsh', installdir='/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/pdsh/2.34-GCCcore-12.3.0', module_name='pdsh/2.34-GCCcore-12.3.0', name='pdsh', nameletter='p', nameletterlower='p', namelower='pdsh', parallel='6', start_dir='None', toolchain_name='GCCcore', toolchain_version='12.3.0', version='2.34', version_major='2', version_major_minor='2.34', version_minor='34', versionprefix='', versionsuffix='' | |
| == 2023-08-08 09:55:47,672 easyblock.py:3934 INFO Running method checksum_step part of step source | |
| == 2023-08-08 09:55:47,673 easyblock.py:2437 INFO Checksum verification for /user/gent/461/vsc46128/.local/easybuild/sources/p/pdsh/pdsh-2.34.tar.gz using b47b3e4662736ef44b6fe86e3d380f95e591863e69163aa0592e9f9f618521e9 passed. | |
| == 2023-08-08 09:55:47,673 easyblock.py:3934 INFO Running method extract_step part of step source | |
| == 2023-08-08 09:55:47,673 easyblock.py:2549 INFO Unpacking source pdsh-2.34.tar.gz | |
| == 2023-08-08 09:55:47,673 run.py:236 INFO running cmd: tar xzf /user/gent/461/vsc46128/.local/easybuild/sources/p/pdsh/pdsh-2.34.tar.gz | |
| == 2023-08-08 09:55:47,693 build_log.py:267 INFO patching... | |
| == 2023-08-08 09:55:47,695 easyblock.py:3926 INFO Starting patch step | |
| == 2023-08-08 09:55:47,695 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-08-08 09:55:47,695 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='pdsh', builddir='/tmp/vsc46128/pdsh/2.34/GCCcore-12.3.0', github_account='pdsh', installdir='/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/pdsh/2.34-GCCcore-12.3.0', module_name='pdsh/2.34-GCCcore-12.3.0', name='pdsh', nameletter='p', nameletterlower='p', namelower='pdsh', parallel='6', start_dir='None', toolchain_name='GCCcore', toolchain_version='12.3.0', version='2.34', version_major='2', version_major_minor='2.34', version_minor='34', versionprefix='', versionsuffix='' | |
| == 2023-08-08 09:55:47,695 easyblock.py:3934 INFO Running method patch_step part of step patch | |
| == 2023-08-08 09:55:47,695 build_log.py:267 INFO preparing... | |
| == 2023-08-08 09:55:47,697 easyblock.py:3926 INFO Starting prepare step | |
| == 2023-08-08 09:55:47,697 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-08-08 09:55:47,697 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='pdsh', builddir='/tmp/vsc46128/pdsh/2.34/GCCcore-12.3.0', github_account='pdsh', installdir='/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/pdsh/2.34-GCCcore-12.3.0', module_name='pdsh/2.34-GCCcore-12.3.0', name='pdsh', nameletter='p', nameletterlower='p', namelower='pdsh', parallel='6', start_dir='None', toolchain_name='GCCcore', toolchain_version='12.3.0', version='2.34', version_major='2', version_major_minor='2.34', version_minor='34', versionprefix='', versionsuffix='' | |
| == 2023-08-08 09:55:47,697 easyblock.py:3934 INFO Running method prepare_step part of step prepare | |
| == 2023-08-08 09:55:47,698 modules.py:626 INFO Checking whether binutils/2.40-GCCcore-12.3.0 exists... | |
| == 2023-08-08 09:55:47,698 modules.py:631 INFO Module binutils/2.40-GCCcore-12.3.0 exists (found in list of available modules) | |
| == 2023-08-08 09:55:47,698 modules.py:654 INFO Result for existence check of binutils/2.40-GCCcore-12.3.0 module: True | |
| == 2023-08-08 09:55:47,698 modules.py:626 INFO Checking whether libreadline/8.2-GCCcore-12.3.0 exists... | |
| == 2023-08-08 09:55:47,698 modules.py:631 INFO Module libreadline/8.2-GCCcore-12.3.0 exists (found in list of available modules) | |
| == 2023-08-08 09:55:47,699 modules.py:654 INFO Result for existence check of libreadline/8.2-GCCcore-12.3.0 module: True | |
| == 2023-08-08 09:55:47,699 modules.py:626 INFO Checking whether GCCcore/12.3.0 exists... | |
| == 2023-08-08 09:55:47,699 modules.py:633 INFO Module GCCcore/12.3.0 not found in list of available modules, checking via 'module show'... | |
| == 2023-08-08 09:55:49,353 modules.py:654 INFO Result for existence check of GCCcore/12.3.0 module: True | |
| == 2023-08-08 09:55:51,508 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:126 in __init__): Module command '/usr/share/lmod/lmod/libexec/lmod python load GCCcore/12.3.0' failed with exit code 1; stderr: Lmod has detected the following error: A different version of the 'GCCcore' | |
| module is already loaded (see output of 'ml'). | |
| If you don't understand the warning or error, contact the helpdesk at | |
| hpc@ugent.be | |
| ; stdout: _mlstatus = False | |
| (at easybuild/tools/modules.py:838 in run_module) | |
| == 2023-08-08 09:55:51,508 build_log.py:267 INFO ... (took 3 secs) | |
| == 2023-08-08 09:55:51,510 filetools.py:2015 INFO Removing lock /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/.locks/_data_gent_461_vsc46128_easybuild_RHEL8_zen2-ib_software_pdsh_2.34-GCCcore-12.3.0.lock... | |
| == 2023-08-08 09:55:51,511 filetools.py:384 INFO Path /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/.locks/_data_gent_461_vsc46128_easybuild_RHEL8_zen2-ib_software_pdsh_2.34-GCCcore-12.3.0.lock successfully removed. | |
| == 2023-08-08 09:55:51,511 filetools.py:2019 INFO Lock removed: /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/.locks/_data_gent_461_vsc46128_easybuild_RHEL8_zen2-ib_software_pdsh_2.34-GCCcore-12.3.0.lock | |
| == 2023-08-08 09:55:51,511 easyblock.py:4257 WARNING build failed (first 300 chars): Module command '/usr/share/lmod/lmod/libexec/lmod python load GCCcore/12.3.0' failed with exit code 1; stderr: Lmod has detected the following error: A different version of the 'GCCcore' | |
| module is already loaded (see output of 'ml'). | |
| If you don't understand the warning or error, contact the helpde | |
| == 2023-08-08 09:55:51,511 easyblock.py:328 INFO Closing log for application name pdsh version 2.34 |
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