(partial) EasyBuild log for failed build of /tmp/eb-ksgovttv/files_pr18615/r/R-bundle-Bioconductor/R-bundle-Bioconductor-3.16-foss-2022b-R-4.2.2.eb (PR(s) #18615)

R-bundle-Bioconductor-3.16-foss-2022b-R-4.2.2_partial.log

== 2023-08-22 14:49:52,639 easyblock.py:313 INFO This is EasyBuild 4.8.0 (framework: 4.8.0, easyblocks: 4.8.0) on host node3541.doduo.os.
== 2023-08-22 14:49:52,640 easyblock.py:319 INFO This is easyblock Bundle from module easybuild.easyblocks.generic.bundle (/user/gent/461/vsc46128/.local/lib/python3.10/site-packages/easybuild/easyblocks/generic/bundle.py)
== 2023-08-22 14:49:52,640 easyblock.py:1040 INFO Build dir set to /tmp/vsc46128/RbundleBioconductor/3.16/foss-2022b-R-4.2.2
== 2023-08-22 14:49:52,640 easyblock.py:1097 INFO Software install dir set to /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2
== 2023-08-22 14:49:52,640 easyblock.py:1102 INFO Module install dir set to /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/modules/all
== 2023-08-22 14:49:52,640 easyblock.py:288 INFO Init completed for application name R-bundle-Bioconductor version 3.16
== 2023-08-22 14:49:52,640 easyblock.py:4200 INFO Obtained application instance of for R-bundle-Bioconductor (easyblock: Bundle)
== 2023-08-22 14:49:52,640 easyconfig.py:1690 INFO Generating template values...
== 2023-08-22 14:49:52,640 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI'
== 2023-08-22 14:49:52,641 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'})
== 2023-08-22 14:49:52,641 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='r-bundle-bioconductor', github_account='r-bundle-bioconductor', module_name='R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2', mpi_cmd_prefix='mpirun -n 1', name='R-bundle-Bioconductor', nameletter='R', nameletterlower='r', namelower='r-bundle-bioconductor', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.2', toolchain_name='foss', toolchain_version='2022b', version='3.16', version_major='3', version_major_minor='3.16', version_minor='16', versionprefix='', versionsuffix='-R-4.2.2'
== 2023-08-22 14:49:53,187 one.py:180 INFO Skipping reformatting value for parameter 'toolchain'
== 2023-08-22 14:49:53,190 filetools.py:1913 INFO Creating directory /tmp/eb-ksgovttv/reprod_20230822144952_1182469 (parents: True, set_gid: False, sticky: False)
== 2023-08-22 14:49:53,190 easyblock.py:4454 INFO Dumped easyconfig instance to /tmp/eb-ksgovttv/reprod_20230822144952_1182469/R-bundle-Bioconductor-3.16-foss-2022b-R-4.2.2.eb
== 2023-08-22 14:49:53,190 filetools.py:1913 INFO Creating directory /tmp/eb-ksgovttv/reprod_20230822144952_1182469/easyblocks (parents: True, set_gid: False, sticky: False)
== 2023-08-22 14:49:53,213 filetools.py:2426 INFO /user/gent/461/vsc46128/.local/lib/python3.10/site-packages/easybuild/easyblocks/generic/bundle.py copied to /tmp/eb-ksgovttv/reprod_20230822144952_1182469/easyblocks/bundle.py
== 2023-08-22 14:49:53,213 easyblock.py:4434 INFO Dumped easyblock bundle.py required for reproduction to /tmp/eb-ksgovttv/reprod_20230822144952_1182469/easyblocks
== 2023-08-22 14:49:53,214 easyblock.py:2209 INFO Number of iterations to perform for central part of installation procedure: 1
== 2023-08-22 14:49:53,214 build_log.py:267 INFO building and installing R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2...
== 2023-08-22 14:49:53,217 filetools.py:1968 INFO Lock /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/.locks/_data_gent_461_vsc46128_easybuild_RHEL8_zen2-ib_software_R-bundle-Bioconductor_3.16-foss-2022b-R-4.2.2.lock exists!
== 2023-08-22 14:49:53,222 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:126 in __init__): Lock /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/.locks/_data_gent_461_vsc46128_easybuild_RHEL8_zen2-ib_software_R-bundle-Bioconductor_3.16-foss-2022b-R-4.2.2.lock already exists, aborting! (at easybuild/tools/filetools.py:2004 in check_lock)
== 2023-08-22 14:49:53,222 easyblock.py:4257 WARNING build failed (first 300 chars): Lock /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/.locks/_data_gent_461_vsc46128_easybuild_RHEL8_zen2-ib_software_R-bundle-Bioconductor_3.16-foss-2022b-R-4.2.2.lock already exists, aborting!
== 2023-08-22 14:49:53,222 easyblock.py:328 INFO Closing log for application name R-bundle-Bioconductor version 3.16