Created
August 22, 2023 12:49
-
-
Save laraPPr/e235663a85479c4903e9ceb7e893110f to your computer and use it in GitHub Desktop.
(partial) EasyBuild log for failed build of /tmp/eb-ksgovttv/files_pr18615/l/leafcutter/leafcutter-0.2.9-foss-2022b-R-4.2.2.eb (PR(s) #18615)
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| == 2023-08-22 14:49:23,628 easyblock.py:313 INFO This is EasyBuild 4.8.0 (framework: 4.8.0, easyblocks: 4.8.0) on host node3541.doduo.os. | |
| == 2023-08-22 14:49:23,628 easyblock.py:319 INFO This is easyblock RPackage from module easybuild.easyblocks.generic.rpackage (/user/gent/461/vsc46128/.local/lib/python3.10/site-packages/easybuild/easyblocks/generic/rpackage.py) | |
| == 2023-08-22 14:49:23,628 easyblock.py:1040 INFO Build dir set to /tmp/vsc46128/leafcutter/0.2.9/foss-2022b-R-4.2.2 | |
| == 2023-08-22 14:49:23,628 easyblock.py:1097 INFO Software install dir set to /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/leafcutter/0.2.9-foss-2022b-R-4.2.2 | |
| == 2023-08-22 14:49:23,628 easyblock.py:1102 INFO Module install dir set to /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/modules/all | |
| == 2023-08-22 14:49:23,628 easyblock.py:288 INFO Init completed for application name leafcutter version 0.2.9 | |
| == 2023-08-22 14:49:23,628 easyblock.py:4200 INFO Obtained application instance of for leafcutter (easyblock: RPackage) | |
| == 2023-08-22 14:49:23,628 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-08-22 14:49:23,628 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2023-08-22 14:49:23,628 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2023-08-22 14:49:23,629 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='leafcutter', github_account='leafcutter', module_name='leafcutter/0.2.9-foss-2022b-R-4.2.2', mpi_cmd_prefix='mpirun -n 1', name='leafcutter', nameletter='l', nameletterlower='l', namelower='leafcutter', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.8', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.2', toolchain_name='foss', toolchain_version='2022b', version='0.2.9', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='-R-4.2.2' | |
| == 2023-08-22 14:49:23,629 one.py:180 INFO Skipping reformatting value for parameter 'toolchain' | |
| == 2023-08-22 14:49:23,630 filetools.py:1913 INFO Creating directory /tmp/eb-ksgovttv/reprod_20230822144923_1182469 (parents: True, set_gid: False, sticky: False) | |
| == 2023-08-22 14:49:23,630 easyblock.py:4454 INFO Dumped easyconfig instance to /tmp/eb-ksgovttv/reprod_20230822144923_1182469/leafcutter-0.2.9-foss-2022b-R-4.2.2.eb | |
| == 2023-08-22 14:49:23,631 filetools.py:1913 INFO Creating directory /tmp/eb-ksgovttv/reprod_20230822144923_1182469/easyblocks (parents: True, set_gid: False, sticky: False) | |
| == 2023-08-22 14:49:23,640 filetools.py:2426 INFO /user/gent/461/vsc46128/.local/lib/python3.10/site-packages/easybuild/easyblocks/generic/rpackage.py copied to /tmp/eb-ksgovttv/reprod_20230822144923_1182469/easyblocks/rpackage.py | |
| == 2023-08-22 14:49:23,640 easyblock.py:4434 INFO Dumped easyblock rpackage.py required for reproduction to /tmp/eb-ksgovttv/reprod_20230822144923_1182469/easyblocks | |
| == 2023-08-22 14:49:23,641 easyblock.py:2209 INFO Number of iterations to perform for central part of installation procedure: 1 | |
| == 2023-08-22 14:49:23,641 build_log.py:267 INFO building and installing leafcutter/0.2.9-foss-2022b-R-4.2.2... | |
| == 2023-08-22 14:49:23,644 filetools.py:2006 INFO Lock /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/.locks/_data_gent_461_vsc46128_easybuild_RHEL8_zen2-ib_software_leafcutter_0.2.9-foss-2022b-R-4.2.2.lock does not exist | |
| == 2023-08-22 14:49:23,644 filetools.py:1947 INFO Creating lock at /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/.locks/_data_gent_461_vsc46128_easybuild_RHEL8_zen2-ib_software_leafcutter_0.2.9-foss-2022b-R-4.2.2.lock... | |
| == 2023-08-22 14:49:23,644 filetools.py:1913 INFO Creating directory /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/.locks/_data_gent_461_vsc46128_easybuild_RHEL8_zen2-ib_software_leafcutter_0.2.9-foss-2022b-R-4.2.2.lock (parents: True, set_gid: False, sticky: False) | |
| == 2023-08-22 14:49:23,656 filetools.py:1956 INFO Lock created: /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/.locks/_data_gent_461_vsc46128_easybuild_RHEL8_zen2-ib_software_leafcutter_0.2.9-foss-2022b-R-4.2.2.lock | |
| == 2023-08-22 14:49:23,656 build_log.py:267 INFO fetching files... | |
| == 2023-08-22 14:49:23,658 easyblock.py:3926 INFO Starting fetch step | |
| == 2023-08-22 14:49:23,658 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-08-22 14:49:23,659 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2023-08-22 14:49:23,659 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2023-08-22 14:49:23,659 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='leafcutter', builddir='/tmp/vsc46128/leafcutter/0.2.9/foss-2022b-R-4.2.2', github_account='leafcutter', installdir='/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/leafcutter/0.2.9-foss-2022b-R-4.2.2', module_name='leafcutter/0.2.9-foss-2022b-R-4.2.2', mpi_cmd_prefix='mpirun -n 1', name='leafcutter', nameletter='l', nameletterlower='l', namelower='leafcutter', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.8', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.2', start_dir='leafcutter', toolchain_name='foss', toolchain_version='2022b', version='0.2.9', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='-R-4.2.2' | |
| == 2023-08-22 14:49:23,659 easyblock.py:3934 INFO Running method fetch_step part of step fetch | |
| == 2023-08-22 14:49:23,659 easyblock.py:2331 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2023-08-22 14:49:23,659 easyblock.py:802 INFO Considering directory in which easyconfig file is located when searching for leafcutter-0.2.9.tar.gz: /tmp/eb-ksgovttv/files_pr18615/l/leafcutter | |
| == 2023-08-22 14:49:23,659 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/gent/461/vsc46128/.local/bin/eb | |
| == 2023-08-22 14:49:23,659 tools.py:287 INFO Also considering installation prefix /user/gent/461/vsc46128/.local (determined via path to 'eb' script)... | |
| == 2023-08-22 14:49:23,666 easyblock.py:844 INFO Found file leafcutter-0.2.9.tar.gz at /data/gent/461/vsc46128/easybuild/sources/l/leafcutter/leafcutter-0.2.9.tar.gz | |
| == 2023-08-22 14:49:23,666 easyblock.py:496 INFO Added sources: [{'name': 'leafcutter-0.2.9.tar.gz', 'path': '/data/gent/461/vsc46128/easybuild/sources/l/leafcutter/leafcutter-0.2.9.tar.gz', 'cmd': None, 'checksum': 'defee98257b330200b86b1a158231b818025a1f30c019c254907c2669efdf9f7', 'finalpath': '/tmp/vsc46128/leafcutter/0.2.9/foss-2022b-R-4.2.2'}] | |
| == 2023-08-22 14:49:23,666 easyblock.py:2374 INFO no patches provided | |
| == 2023-08-22 14:49:23,717 easyblock.py:2384 INFO md5 checksum for /data/gent/461/vsc46128/easybuild/sources/l/leafcutter/leafcutter-0.2.9.tar.gz: e721fc333b6b03f9847caf8156668e5e | |
| == 2023-08-22 14:49:23,722 easyblock.py:2384 INFO sha256 checksum for /data/gent/461/vsc46128/easybuild/sources/l/leafcutter/leafcutter-0.2.9.tar.gz: defee98257b330200b86b1a158231b818025a1f30c019c254907c2669efdf9f7 | |
| == 2023-08-22 14:49:23,722 easyblock.py:2419 INFO Checking dirs that need to be created: ['/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/leafcutter/0.2.9-foss-2022b-R-4.2.2', '/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/modules/all/leafcutter', '/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/modules/bio/leafcutter'] | |
| == 2023-08-22 14:49:23,723 build_log.py:267 INFO creating build dir, resetting environment... | |
| == 2023-08-22 14:49:23,725 easyblock.py:3926 INFO Starting ready step | |
| == 2023-08-22 14:49:23,726 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-08-22 14:49:23,726 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2023-08-22 14:49:23,726 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2023-08-22 14:49:23,726 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='leafcutter', builddir='/tmp/vsc46128/leafcutter/0.2.9/foss-2022b-R-4.2.2', github_account='leafcutter', installdir='/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/leafcutter/0.2.9-foss-2022b-R-4.2.2', module_name='leafcutter/0.2.9-foss-2022b-R-4.2.2', mpi_cmd_prefix='mpirun -n 1', name='leafcutter', nameletter='l', nameletterlower='l', namelower='leafcutter', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.8', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.2', start_dir='leafcutter', toolchain_name='foss', toolchain_version='2022b', version='0.2.9', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='-R-4.2.2' | |
| == 2023-08-22 14:49:23,726 easyblock.py:3934 INFO Running method check_readiness_step part of step ready | |
| == 2023-08-22 14:49:23,728 run.py:236 INFO running cmd: ulimit -u | |
| == 2023-08-22 14:49:23,732 easyblock.py:2228 INFO Setting parallelism: 6 | |
| == 2023-08-22 14:49:23,822 easyblock.py:2280 WARNING Loaded modules detected: ['env/vsc/doduo', 'env/slurm/doduo', 'env/software/doduo', 'cluster/doduo', 'GCCcore/12.2.0', 'zlib/1.2.12-GCCcore-12.2.0', 'binutils/2.39-GCCcore-12.2.0', 'GCC/12.2.0', 'bzip2/1.0.8-GCCcore-12.2.0', 'ncurses/6.3-GCCcore-12.2.0', 'libreadline/8.2-GCCcore-12.2.0', 'Tcl/8.6.12-GCCcore-12.2.0', 'SQLite/3.39.4-GCCcore-12.2.0', 'XZ/5.2.7-GCCcore-12.2.0', 'GMP/6.2.1-GCCcore-12.2.0', 'libffi/3.4.4-GCCcore-12.2.0', 'OpenSSL/1.1', 'Python/3.10.8-GCCcore-12.2.0', 'sagecipher/1.0.0-GCC-12.2.0-Python-3.10.8'] | |
| == 2023-08-22 14:49:23,824 easyblock.py:2253 INFO Removing existing module file /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/modules/all/leafcutter/0.2.9-foss-2022b-R-4.2.2.lua | |
| == 2023-08-22 14:49:23,827 easyblock.py:3934 INFO Running method make_builddir part of step ready | |
| == 2023-08-22 14:49:23,827 filetools.py:1913 INFO Creating directory /tmp/vsc46128/leafcutter/0.2.9/foss-2022b-R-4.2.2 (parents: True, set_gid: False, sticky: False) | |
| == 2023-08-22 14:49:23,827 easyblock.py:3934 INFO Running method reset_env part of step ready | |
| == 2023-08-22 14:49:23,827 easyblock.py:3934 INFO Running method handle_iterate_opts part of step ready | |
| == 2023-08-22 14:49:23,827 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-08-22 14:49:23,828 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2023-08-22 14:49:23,828 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2023-08-22 14:49:23,828 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='leafcutter', builddir='/tmp/vsc46128/leafcutter/0.2.9/foss-2022b-R-4.2.2', github_account='leafcutter', installdir='/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/leafcutter/0.2.9-foss-2022b-R-4.2.2', module_name='leafcutter/0.2.9-foss-2022b-R-4.2.2', mpi_cmd_prefix='mpirun -n 1', name='leafcutter', nameletter='l', nameletterlower='l', namelower='leafcutter', parallel='6', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.8', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.2', start_dir='leafcutter', toolchain_name='foss', toolchain_version='2022b', version='0.2.9', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='-R-4.2.2' | |
| == 2023-08-22 14:49:23,828 build_log.py:267 INFO unpacking... | |
| == 2023-08-22 14:49:23,830 easyblock.py:3926 INFO Starting source step | |
| == 2023-08-22 14:49:23,830 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-08-22 14:49:23,831 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2023-08-22 14:49:23,831 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2023-08-22 14:49:23,831 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='leafcutter', builddir='/tmp/vsc46128/leafcutter/0.2.9/foss-2022b-R-4.2.2', github_account='leafcutter', installdir='/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/leafcutter/0.2.9-foss-2022b-R-4.2.2', module_name='leafcutter/0.2.9-foss-2022b-R-4.2.2', mpi_cmd_prefix='mpirun -n 1', name='leafcutter', nameletter='l', nameletterlower='l', namelower='leafcutter', parallel='6', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.8', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.2', start_dir='leafcutter', toolchain_name='foss', toolchain_version='2022b', version='0.2.9', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='-R-4.2.2' | |
| == 2023-08-22 14:49:23,831 easyblock.py:3934 INFO Running method checksum_step part of step source | |
| == 2023-08-22 14:49:23,835 easyblock.py:2437 INFO Checksum verification for /data/gent/461/vsc46128/easybuild/sources/l/leafcutter/leafcutter-0.2.9.tar.gz using defee98257b330200b86b1a158231b818025a1f30c019c254907c2669efdf9f7 passed. | |
| == 2023-08-22 14:49:23,835 easyblock.py:3934 INFO Running method extract_step part of step source | |
| == 2023-08-22 14:49:23,835 easyblock.py:2549 INFO Unpacking source leafcutter-0.2.9.tar.gz | |
| == 2023-08-22 14:49:23,835 run.py:236 INFO running cmd: tar xzf /data/gent/461/vsc46128/easybuild/sources/l/leafcutter/leafcutter-0.2.9.tar.gz | |
| == 2023-08-22 14:49:23,877 build_log.py:267 INFO patching... | |
| == 2023-08-22 14:49:23,880 easyblock.py:3926 INFO Starting patch step | |
| == 2023-08-22 14:49:23,880 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-08-22 14:49:23,880 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2023-08-22 14:49:23,880 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2023-08-22 14:49:23,880 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='leafcutter', builddir='/tmp/vsc46128/leafcutter/0.2.9/foss-2022b-R-4.2.2', github_account='leafcutter', installdir='/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/leafcutter/0.2.9-foss-2022b-R-4.2.2', module_name='leafcutter/0.2.9-foss-2022b-R-4.2.2', mpi_cmd_prefix='mpirun -n 1', name='leafcutter', nameletter='l', nameletterlower='l', namelower='leafcutter', parallel='6', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.8', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.2', start_dir='leafcutter', toolchain_name='foss', toolchain_version='2022b', version='0.2.9', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='-R-4.2.2' | |
| == 2023-08-22 14:49:23,880 easyblock.py:3934 INFO Running method patch_step part of step patch | |
| == 2023-08-22 14:49:23,881 build_log.py:267 INFO preparing... | |
| == 2023-08-22 14:49:23,883 easyblock.py:3926 INFO Starting prepare step | |
| == 2023-08-22 14:49:23,883 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-08-22 14:49:23,883 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2023-08-22 14:49:23,883 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2023-08-22 14:49:23,883 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='leafcutter', builddir='/tmp/vsc46128/leafcutter/0.2.9/foss-2022b-R-4.2.2', github_account='leafcutter', installdir='/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/leafcutter/0.2.9-foss-2022b-R-4.2.2', module_name='leafcutter/0.2.9-foss-2022b-R-4.2.2', mpi_cmd_prefix='mpirun -n 1', name='leafcutter', nameletter='l', nameletterlower='l', namelower='leafcutter', parallel='6', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.8', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.2', start_dir='leafcutter', toolchain_name='foss', toolchain_version='2022b', version='0.2.9', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='-R-4.2.2' | |
| == 2023-08-22 14:49:23,883 easyblock.py:3934 INFO Running method prepare_step part of step prepare | |
| == 2023-08-22 14:49:23,884 modules.py:626 INFO Checking whether SAMtools/1.17-GCC-12.2.0 exists... | |
| == 2023-08-22 14:49:23,884 modules.py:631 INFO Module SAMtools/1.17-GCC-12.2.0 exists (found in list of available modules) | |
| == 2023-08-22 14:49:23,884 modules.py:654 INFO Result for existence check of SAMtools/1.17-GCC-12.2.0 module: True | |
| == 2023-08-22 14:49:23,884 modules.py:626 INFO Checking whether RegTools/1.0.0-foss-2022b exists... | |
| == 2023-08-22 14:49:23,885 modules.py:631 INFO Module RegTools/1.0.0-foss-2022b exists (found in list of available modules) | |
| == 2023-08-22 14:49:23,885 modules.py:654 INFO Result for existence check of RegTools/1.0.0-foss-2022b module: True | |
| == 2023-08-22 14:49:23,885 modules.py:626 INFO Checking whether Python/3.10.8-GCCcore-12.2.0 exists... | |
| == 2023-08-22 14:49:23,885 modules.py:631 INFO Module Python/3.10.8-GCCcore-12.2.0 exists (found in list of available modules) | |
| == 2023-08-22 14:49:23,885 modules.py:654 INFO Result for existence check of Python/3.10.8-GCCcore-12.2.0 module: True | |
| == 2023-08-22 14:49:23,885 modules.py:626 INFO Checking whether R/4.2.2-foss-2022b exists... | |
| == 2023-08-22 14:49:23,885 modules.py:631 INFO Module R/4.2.2-foss-2022b exists (found in list of available modules) | |
| == 2023-08-22 14:49:23,885 modules.py:654 INFO Result for existence check of R/4.2.2-foss-2022b module: True | |
| == 2023-08-22 14:49:23,885 modules.py:626 INFO Checking whether R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2 exists... | |
| == 2023-08-22 14:49:23,885 modules.py:631 INFO Module R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2 exists (found in list of available modules) | |
| == 2023-08-22 14:49:23,885 modules.py:654 INFO Result for existence check of R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2 module: True | |
| == 2023-08-22 14:49:23,885 modules.py:626 INFO Checking whether foss/2022b exists... | |
| == 2023-08-22 14:49:23,885 modules.py:633 INFO Module foss/2022b not found in list of available modules, checking via 'module show'... | |
| == 2023-08-22 14:49:27,799 modules.py:654 INFO Result for existence check of foss/2022b module: True | |
| == 2023-08-22 14:49:33,666 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/zen2-ib/software/SAMtools/1.17-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/cURL/7.86.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ScaLAPACK/2.2.0-gompi-2022b-fb/lib:/apps/gent/RHEL8/zen2-ib/software/FFTW.MPI/3.3.10-gompi-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/FFTW/3.3.10-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/OpenBLAS/0.3.21-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/OpenMPI/4.1.4-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/UCC/1.1.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/PMIx/4.2.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libfabric/1.16.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/UCX/1.13.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libevent/2.1.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/hwloc/2.8.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libpciaccess/0.17-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libxml2/2.10.3-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/numactl/2.0.16-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Python/3.10.8-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/zen2-ib/software/libffi/3.4.4-GCCcore-12.2.0/lib64:/apps/gent/RHEL8/zen2-ib/software/GMP/6.2.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/XZ/5.2.7-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/SQLite/3.39.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Tcl/8.6.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libreadline/8.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ncurses/6.3-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/bzip2/1.0.8-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/binutils/2.39-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/zlib/1.2.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GCCcore/12.2.0/lib64 (previous value: '/apps/gent/RHEL8/zen2-ib/software/SAMtools/1.17-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/cURL/7.86.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Python/3.10.8-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/zen2-ib/software/libffi/3.4.4-GCCcore-12.2.0/lib64:/apps/gent/RHEL8/zen2-ib/software/GMP/6.2.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/XZ/5.2.7-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/SQLite/3.39.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Tcl/8.6.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libreadline/8.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ncurses/6.3-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/bzip2/1.0.8-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/binutils/2.39-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/zlib/1.2.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GCCcore/12.2.0/lib64') | |
| == 2023-08-22 14:49:38,084 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/R/4.2.2-foss-2022b/lib64/R/lib:/apps/gent/RHEL8/zen2-ib/software/libgit2/1.5.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/MPFR/4.2.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GDAL/3.6.2-foss-2022b/lib64:/apps/gent/RHEL8/zen2-ib/software/OpenJPEG/2.5.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/LERC/4.0.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Qhull/2020.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Brunsli/0.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Highway/1.0.3-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/OpenEXR/3.1.5-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Imath/3.1.6-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Xerces-C++/3.2.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/json-c/0.16-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/giflib/5.2.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/CFITSIO/4.2.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Armadillo/11.4.3-foss-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/arpack-ng/3.8.0-foss-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/Boost/1.81.0-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/HDF/4.2.15-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libtirpc/1.3.3-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/SciPy-bundle/2023.02-gfbf-2022b/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/zen2-ib/software/libgeotiff/1.7.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/PROJ/9.1.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/PCRE/8.45-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GEOS/3.11.1-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/netCDF/4.9.0-gompi-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/nodejs/18.12.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GLPK/5.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ImageMagick/7.1.0-53-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/LittleCMS/2.14-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/JasPer/4.0.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Ghostscript/10.0.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GTK3/3.24.35-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libepoxy/1.5.10-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Pango/1.50.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/FriBidi/1.0.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/HarfBuzz/5.3.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Gdk-Pixbuf/2.42.10-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/at-spi2-atk/2.38.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/at-spi2-core/2.46.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/DBus/1.15.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ATK/2.38.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GSL/2.7-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/UDUNITS/2.2.28-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/HDF5/1.14.0-gompi-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/Szip/2.1.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ICU/72.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libsndfile/1.2.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/LAME/3.100-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libopus/1.3.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libvorbis/1.3.7-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/FLAC/1.4.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libogg/1.3.5-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/NLopt/2.7.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Tk/8.6.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/zen2-ib/software/LibTIFF/4.4.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libdeflate/1.15-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/jbigkit/2.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libjpeg-turbo/2.1.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/cairo/1.17.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GLib/2.75.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/PCRE2/10.40-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/gettext/0.21.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/pixman/0.42.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libGLU/9.0.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Mesa/22.2.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/LLVM/15.0.5-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libunwind/1.6.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libglvnd/1.6.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libdrm/2.4.114-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/zstd/1.5.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/lz4/1.9.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/X11/20221110-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/fontconfig/2.14.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/util-linux/2.38.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/freetype/2.12.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Brotli/1.0.9-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libpng/1.6.38-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/expat/2.4.9-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libyaml/0.2.5-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/SAMtools/1.17-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/cURL/7.86.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ScaLAPACK/2.2.0-gompi-2022b-fb/lib:/apps/gent/RHEL8/zen2-ib/software/FFTW.MPI/3.3.10-gompi-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/FFTW/3.3.10-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/OpenBLAS/0.3.21-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/OpenMPI/4.1.4-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/UCC/1.1.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/PMIx/4.2.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libfabric/1.16.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/UCX/1.13.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libevent/2.1.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/hwloc/2.8.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libpciaccess/0.17-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libxml2/2.10.3-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/numactl/2.0.16-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Python/3.10.8-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/zen2-ib/software/libffi/3.4.4-GCCcore-12.2.0/lib64:/apps/gent/RHEL8/zen2-ib/software/GMP/6.2.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/XZ/5.2.7-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/SQLite/3.39.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Tcl/8.6.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libreadline/8.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ncurses/6.3-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/bzip2/1.0.8-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/binutils/2.39-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/zlib/1.2.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GCCcore/12.2.0/lib64 (previous value: '/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/R/4.2.2-foss-2022b/lib64/R/lib:/apps/gent/RHEL8/zen2-ib/software/libgit2/1.5.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/MPFR/4.2.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GDAL/3.6.2-foss-2022b/lib64:/apps/gent/RHEL8/zen2-ib/software/OpenJPEG/2.5.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/LERC/4.0.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Qhull/2020.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Brunsli/0.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Highway/1.0.3-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/OpenEXR/3.1.5-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Imath/3.1.6-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Xerces-C++/3.2.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/json-c/0.16-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/giflib/5.2.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/CFITSIO/4.2.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Armadillo/11.4.3-foss-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/arpack-ng/3.8.0-foss-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/Boost/1.81.0-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/HDF/4.2.15-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libtirpc/1.3.3-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/SciPy-bundle/2023.02-gfbf-2022b/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/zen2-ib/software/libgeotiff/1.7.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/PROJ/9.1.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/PCRE/8.45-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GEOS/3.11.1-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/netCDF/4.9.0-gompi-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/nodejs/18.12.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GLPK/5.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ImageMagick/7.1.0-53-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/LittleCMS/2.14-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/JasPer/4.0.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Ghostscript/10.0.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GTK3/3.24.35-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libepoxy/1.5.10-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Pango/1.50.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/FriBidi/1.0.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/HarfBuzz/5.3.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Gdk-Pixbuf/2.42.10-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/at-spi2-atk/2.38.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/at-spi2-core/2.46.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/DBus/1.15.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ATK/2.38.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GSL/2.7-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/UDUNITS/2.2.28-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/HDF5/1.14.0-gompi-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/Szip/2.1.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ICU/72.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libsndfile/1.2.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/LAME/3.100-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libopus/1.3.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libvorbis/1.3.7-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/FLAC/1.4.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libogg/1.3.5-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/NLopt/2.7.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Tk/8.6.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/zen2-ib/software/LibTIFF/4.4.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libdeflate/1.15-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/jbigkit/2.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libjpeg-turbo/2.1.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/cairo/1.17.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GLib/2.75.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/PCRE2/10.40-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/gettext/0.21.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/pixman/0.42.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libGLU/9.0.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Mesa/22.2.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/LLVM/15.0.5-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libunwind/1.6.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libglvnd/1.6.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libdrm/2.4.114-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/zstd/1.5.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/lz4/1.9.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/X11/20221110-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/fontconfig/2.14.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/util-linux/2.38.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/freetype/2.12.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Brotli/1.0.9-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libpng/1.6.38-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/expat/2.4.9-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libyaml/0.2.5-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Python/3.10.8-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/zen2-ib/software/libffi/3.4.4-GCCcore-12.2.0/lib64:/apps/gent/RHEL8/zen2-ib/software/GMP/6.2.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/XZ/5.2.7-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/SQLite/3.39.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Tcl/8.6.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libreadline/8.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ncurses/6.3-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/bzip2/1.0.8-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/binutils/2.39-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/zlib/1.2.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GCCcore/12.2.0/lib64') | |
| == 2023-08-22 14:49:42,673 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/R/4.2.2-foss-2022b/lib64/R/lib:/apps/gent/RHEL8/zen2-ib/software/libgit2/1.5.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/MPFR/4.2.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GDAL/3.6.2-foss-2022b/lib64:/apps/gent/RHEL8/zen2-ib/software/OpenJPEG/2.5.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/LERC/4.0.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Qhull/2020.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Brunsli/0.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Highway/1.0.3-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/OpenEXR/3.1.5-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Imath/3.1.6-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Xerces-C++/3.2.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/json-c/0.16-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/giflib/5.2.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/CFITSIO/4.2.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Armadillo/11.4.3-foss-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/arpack-ng/3.8.0-foss-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/Boost/1.81.0-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/HDF/4.2.15-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libtirpc/1.3.3-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/SciPy-bundle/2023.02-gfbf-2022b/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/zen2-ib/software/libgeotiff/1.7.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/PROJ/9.1.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/PCRE/8.45-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GEOS/3.11.1-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/netCDF/4.9.0-gompi-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/nodejs/18.12.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GLPK/5.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ImageMagick/7.1.0-53-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/LittleCMS/2.14-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/JasPer/4.0.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Ghostscript/10.0.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GTK3/3.24.35-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libepoxy/1.5.10-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Pango/1.50.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/FriBidi/1.0.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/HarfBuzz/5.3.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Gdk-Pixbuf/2.42.10-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/at-spi2-atk/2.38.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/at-spi2-core/2.46.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/DBus/1.15.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ATK/2.38.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GSL/2.7-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/UDUNITS/2.2.28-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/HDF5/1.14.0-gompi-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/Szip/2.1.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ICU/72.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libsndfile/1.2.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/LAME/3.100-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libopus/1.3.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libvorbis/1.3.7-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/FLAC/1.4.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libogg/1.3.5-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/NLopt/2.7.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Tk/8.6.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/zen2-ib/software/LibTIFF/4.4.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libdeflate/1.15-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/jbigkit/2.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libjpeg-turbo/2.1.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/cairo/1.17.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GLib/2.75.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/PCRE2/10.40-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/gettext/0.21.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/pixman/0.42.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libGLU/9.0.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Mesa/22.2.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/LLVM/15.0.5-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libunwind/1.6.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libglvnd/1.6.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libdrm/2.4.114-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/zstd/1.5.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/lz4/1.9.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/X11/20221110-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/fontconfig/2.14.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/util-linux/2.38.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/freetype/2.12.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Brotli/1.0.9-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libpng/1.6.38-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/expat/2.4.9-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libyaml/0.2.5-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/SAMtools/1.17-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/cURL/7.86.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ScaLAPACK/2.2.0-gompi-2022b-fb/lib:/apps/gent/RHEL8/zen2-ib/software/FFTW.MPI/3.3.10-gompi-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/FFTW/3.3.10-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/OpenBLAS/0.3.21-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/OpenMPI/4.1.4-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/UCC/1.1.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/PMIx/4.2.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libfabric/1.16.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/UCX/1.13.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libevent/2.1.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/hwloc/2.8.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libpciaccess/0.17-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libxml2/2.10.3-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/numactl/2.0.16-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Python/3.10.8-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/zen2-ib/software/libffi/3.4.4-GCCcore-12.2.0/lib64:/apps/gent/RHEL8/zen2-ib/software/GMP/6.2.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/XZ/5.2.7-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/SQLite/3.39.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Tcl/8.6.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libreadline/8.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ncurses/6.3-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/bzip2/1.0.8-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/binutils/2.39-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/zlib/1.2.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GCCcore/12.2.0/lib64 (previous value: '/apps/gent/RHEL8/zen2-ib/software/Python/3.10.8-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/zen2-ib/software/libffi/3.4.4-GCCcore-12.2.0/lib64:/apps/gent/RHEL8/zen2-ib/software/GMP/6.2.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/XZ/5.2.7-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/SQLite/3.39.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Tcl/8.6.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libreadline/8.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ncurses/6.3-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/bzip2/1.0.8-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/binutils/2.39-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/zlib/1.2.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GCCcore/12.2.0/lib64') | |
| == 2023-08-22 14:49:46,428 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/R/4.2.2-foss-2022b/lib64/R/lib:/apps/gent/RHEL8/zen2-ib/software/libgit2/1.5.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/MPFR/4.2.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GDAL/3.6.2-foss-2022b/lib64:/apps/gent/RHEL8/zen2-ib/software/OpenJPEG/2.5.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/LERC/4.0.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Qhull/2020.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Brunsli/0.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Highway/1.0.3-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/OpenEXR/3.1.5-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Imath/3.1.6-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Xerces-C++/3.2.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/json-c/0.16-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/giflib/5.2.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/CFITSIO/4.2.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Armadillo/11.4.3-foss-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/arpack-ng/3.8.0-foss-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/Boost/1.81.0-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/HDF/4.2.15-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libtirpc/1.3.3-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/SciPy-bundle/2023.02-gfbf-2022b/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/zen2-ib/software/libgeotiff/1.7.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/PROJ/9.1.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/PCRE/8.45-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GEOS/3.11.1-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/netCDF/4.9.0-gompi-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/nodejs/18.12.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GLPK/5.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ImageMagick/7.1.0-53-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/LittleCMS/2.14-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/JasPer/4.0.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Ghostscript/10.0.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GTK3/3.24.35-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libepoxy/1.5.10-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Pango/1.50.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/FriBidi/1.0.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/HarfBuzz/5.3.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Gdk-Pixbuf/2.42.10-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/at-spi2-atk/2.38.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/at-spi2-core/2.46.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/DBus/1.15.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ATK/2.38.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GSL/2.7-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/UDUNITS/2.2.28-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/HDF5/1.14.0-gompi-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/Szip/2.1.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ICU/72.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libsndfile/1.2.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/LAME/3.100-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libopus/1.3.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libvorbis/1.3.7-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/FLAC/1.4.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libogg/1.3.5-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/NLopt/2.7.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Tk/8.6.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/zen2-ib/software/LibTIFF/4.4.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libdeflate/1.15-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/jbigkit/2.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libjpeg-turbo/2.1.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/cairo/1.17.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GLib/2.75.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/PCRE2/10.40-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/gettext/0.21.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/pixman/0.42.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libGLU/9.0.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Mesa/22.2.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/LLVM/15.0.5-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libunwind/1.6.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libglvnd/1.6.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libdrm/2.4.114-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/zstd/1.5.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/lz4/1.9.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/X11/20221110-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/fontconfig/2.14.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/util-linux/2.38.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/freetype/2.12.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Brotli/1.0.9-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libpng/1.6.38-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/expat/2.4.9-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libyaml/0.2.5-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/SAMtools/1.17-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/cURL/7.86.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ScaLAPACK/2.2.0-gompi-2022b-fb/lib:/apps/gent/RHEL8/zen2-ib/software/FFTW.MPI/3.3.10-gompi-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/FFTW/3.3.10-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/OpenBLAS/0.3.21-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/OpenMPI/4.1.4-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/UCC/1.1.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/PMIx/4.2.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libfabric/1.16.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/UCX/1.13.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libevent/2.1.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/hwloc/2.8.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libpciaccess/0.17-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libxml2/2.10.3-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/numactl/2.0.16-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Python/3.10.8-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/zen2-ib/software/libffi/3.4.4-GCCcore-12.2.0/lib64:/apps/gent/RHEL8/zen2-ib/software/GMP/6.2.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/XZ/5.2.7-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/SQLite/3.39.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Tcl/8.6.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libreadline/8.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ncurses/6.3-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/bzip2/1.0.8-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/binutils/2.39-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/zlib/1.2.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GCCcore/12.2.0/lib64 (previous value: '/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/R/4.2.2-foss-2022b/lib64/R/lib:/apps/gent/RHEL8/zen2-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/zen2-ib/software/Python/3.10.8-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/zen2-ib/software/libffi/3.4.4-GCCcore-12.2.0/lib64:/apps/gent/RHEL8/zen2-ib/software/GMP/6.2.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/XZ/5.2.7-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/SQLite/3.39.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Tcl/8.6.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libreadline/8.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ncurses/6.3-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/bzip2/1.0.8-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/binutils/2.39-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/zlib/1.2.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GCCcore/12.2.0/lib64') | |
| == 2023-08-22 14:49:49,930 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/zen2-ib/software/Arrow/11.0.0-gfbf-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/utf8proc/2.8.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/RE2/2023-03-01-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/snappy/1.1.9-GCCcore-12.2.0/lib:/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/R/4.2.2-foss-2022b/lib64/R/lib:/apps/gent/RHEL8/zen2-ib/software/libgit2/1.5.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/MPFR/4.2.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GDAL/3.6.2-foss-2022b/lib64:/apps/gent/RHEL8/zen2-ib/software/OpenJPEG/2.5.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/LERC/4.0.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Qhull/2020.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Brunsli/0.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Highway/1.0.3-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/OpenEXR/3.1.5-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Imath/3.1.6-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Xerces-C++/3.2.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/json-c/0.16-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/giflib/5.2.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/CFITSIO/4.2.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Armadillo/11.4.3-foss-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/arpack-ng/3.8.0-foss-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/Boost/1.81.0-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/HDF/4.2.15-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libtirpc/1.3.3-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/SciPy-bundle/2023.02-gfbf-2022b/lib/python3.10/site-packages/numpy/core/lib:/apps/gent/RHEL8/zen2-ib/software/libgeotiff/1.7.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/PROJ/9.1.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/PCRE/8.45-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GEOS/3.11.1-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/netCDF/4.9.0-gompi-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/nodejs/18.12.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GLPK/5.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ImageMagick/7.1.0-53-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/LittleCMS/2.14-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/JasPer/4.0.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Ghostscript/10.0.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GTK3/3.24.35-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libepoxy/1.5.10-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Pango/1.50.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/FriBidi/1.0.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/HarfBuzz/5.3.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Gdk-Pixbuf/2.42.10-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/at-spi2-atk/2.38.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/at-spi2-core/2.46.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/DBus/1.15.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ATK/2.38.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GSL/2.7-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/UDUNITS/2.2.28-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/HDF5/1.14.0-gompi-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/Szip/2.1.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ICU/72.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libsndfile/1.2.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/LAME/3.100-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libopus/1.3.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libvorbis/1.3.7-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/FLAC/1.4.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libogg/1.3.5-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/NLopt/2.7.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Tk/8.6.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Java/11.0.2/lib:/apps/gent/RHEL8/zen2-ib/software/LibTIFF/4.4.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libdeflate/1.15-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/jbigkit/2.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libjpeg-turbo/2.1.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/cairo/1.17.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GLib/2.75.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/PCRE2/10.40-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/gettext/0.21.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/pixman/0.42.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libGLU/9.0.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Mesa/22.2.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/LLVM/15.0.5-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libunwind/1.6.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libglvnd/1.6.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libdrm/2.4.114-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/zstd/1.5.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/lz4/1.9.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/X11/20221110-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/fontconfig/2.14.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/util-linux/2.38.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/freetype/2.12.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Brotli/1.0.9-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libpng/1.6.38-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/expat/2.4.9-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libyaml/0.2.5-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/SAMtools/1.17-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/cURL/7.86.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ScaLAPACK/2.2.0-gompi-2022b-fb/lib:/apps/gent/RHEL8/zen2-ib/software/FFTW.MPI/3.3.10-gompi-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/FFTW/3.3.10-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/OpenBLAS/0.3.21-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/OpenMPI/4.1.4-GCC-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/UCC/1.1.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/PMIx/4.2.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libfabric/1.16.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/UCX/1.13.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libevent/2.1.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/hwloc/2.8.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libpciaccess/0.17-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libxml2/2.10.3-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/numactl/2.0.16-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Python/3.10.8-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/zen2-ib/software/libffi/3.4.4-GCCcore-12.2.0/lib64:/apps/gent/RHEL8/zen2-ib/software/GMP/6.2.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/XZ/5.2.7-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/SQLite/3.39.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Tcl/8.6.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libreadline/8.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ncurses/6.3-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/bzip2/1.0.8-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/binutils/2.39-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/zlib/1.2.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GCCcore/12.2.0/lib64 (previous value: '/apps/gent/RHEL8/zen2-ib/software/Arrow/11.0.0-gfbf-2022b/lib:/apps/gent/RHEL8/zen2-ib/software/utf8proc/2.8.0-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/RE2/2023-03-01-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/snappy/1.1.9-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Python/3.10.8-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/zen2-ib/software/libffi/3.4.4-GCCcore-12.2.0/lib64:/apps/gent/RHEL8/zen2-ib/software/GMP/6.2.1-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/XZ/5.2.7-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/SQLite/3.39.4-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/Tcl/8.6.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/libreadline/8.2-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/ncurses/6.3-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/bzip2/1.0.8-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/binutils/2.39-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/zlib/1.2.12-GCCcore-12.2.0/lib:/apps/gent/RHEL8/zen2-ib/software/GCCcore/12.2.0/lib64') | |
| == 2023-08-22 14:49:49,930 modules.py:626 INFO Checking whether foss/2022b exists... | |
| == 2023-08-22 14:49:49,931 modules.py:633 INFO Module foss/2022b not found in list of available modules, checking via 'module show'... | |
| == 2023-08-22 14:49:49,931 modules.py:654 INFO Result for existence check of foss/2022b module: True | |
| == 2023-08-22 14:49:49,932 toolchain.py:762 INFO List of toolchain dependency modules and toolchain definition match! | |
| == 2023-08-22 14:49:49,933 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64. | |
| == 2023-08-22 14:49:49,945 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/zen2-ib/software/ScaLAPACK/2.2.0-gompi-2022b-fb/include was not found | |
| == 2023-08-22 14:49:49,949 variables.py:203 WARNING flags_for_subdirs: directory /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/RegTools/1.0.0-foss-2022b/include was not found | |
| == 2023-08-22 14:49:49,949 variables.py:203 WARNING flags_for_subdirs: directory /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/RegTools/1.0.0-foss-2022b/lib64 was not found | |
| == 2023-08-22 14:49:49,949 variables.py:203 WARNING flags_for_subdirs: directory /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/RegTools/1.0.0-foss-2022b/lib was not found | |
| == 2023-08-22 14:49:49,950 variables.py:203 WARNING flags_for_subdirs: directory /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/R/4.2.2-foss-2022b/include was not found | |
| == 2023-08-22 14:49:49,950 variables.py:203 WARNING flags_for_subdirs: directory /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/R/4.2.2-foss-2022b/lib was not found | |
| == 2023-08-22 14:49:49,951 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/zen2-ib/software/R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2/include was not found | |
| == 2023-08-22 14:49:49,952 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/zen2-ib/software/R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2/lib64 was not found | |
| == 2023-08-22 14:49:49,952 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/zen2-ib/software/R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2/lib was not found | |
| == 2023-08-22 14:49:49,954 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/zen2-ib/software/FlexiBLAS/3.2.1-GCC-12.2.0/include/flexiblas (previously undefined) | |
| == 2023-08-22 14:49:49,954 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/zen2-ib/software/FlexiBLAS/3.2.1-GCC-12.2.0/include/flexiblas (previously undefined) | |
| == 2023-08-22 14:49:49,954 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/zen2-ib/software/FlexiBLAS/3.2.1-GCC-12.2.0/include/flexiblas (previously undefined) | |
| == 2023-08-22 14:49:49,954 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/zen2-ib/software/FlexiBLAS/3.2.1-GCC-12.2.0/include/flexiblas (previously undefined) | |
| == 2023-08-22 14:49:49,955 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/zen2-ib/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib (previously undefined) | |
| == 2023-08-22 14:49:49,955 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/zen2-ib/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib (previously undefined) | |
| == 2023-08-22 14:49:49,955 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2023-08-22 14:49:49,955 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2023-08-22 14:49:49,955 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2023-08-22 14:49:49,955 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2023-08-22 14:49:49,955 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2023-08-22 14:49:49,955 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2023-08-22 14:49:49,955 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2023-08-22 14:49:49,955 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2023-08-22 14:49:49,955 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/zen2-ib/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib (previously undefined) | |
| == 2023-08-22 14:49:49,955 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/zen2-ib/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib (previously undefined) | |
| == 2023-08-22 14:49:49,955 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2023-08-22 14:49:49,955 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2023-08-22 14:49:49,956 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2023-08-22 14:49:49,956 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2023-08-22 14:49:49,956 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2023-08-22 14:49:49,956 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2023-08-22 14:49:49,956 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2023-08-22 14:49:49,956 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2023-08-22 14:49:49,956 environment.py:93 INFO Environment variable CC set to gcc (previously undefined) | |
| == 2023-08-22 14:49:49,956 environment.py:93 INFO Environment variable EBVARCC set to gcc (previously undefined) | |
| == 2023-08-22 14:49:49,956 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2023-08-22 14:49:49,956 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2023-08-22 14:49:49,956 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/zen2-ib/software/Python/3.10.8-GCCcore-12.2.0/include -I/apps/gent/RHEL8/zen2-ib/software/SAMtools/1.17-GCC-12.2.0/include -I/apps/gent/RHEL8/zen2-ib/software/FFTW/3.3.10-GCC-12.2.0/include -I/apps/gent/RHEL8/zen2-ib/software/FlexiBLAS/3.2.1-GCC-12.2.0/include -I/apps/gent/RHEL8/zen2-ib/software/FlexiBLAS/3.2.1-GCC-12.2.0/include/flexiblas (previously undefined) | |
| == 2023-08-22 14:49:49,956 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/zen2-ib/software/Python/3.10.8-GCCcore-12.2.0/include -I/apps/gent/RHEL8/zen2-ib/software/SAMtools/1.17-GCC-12.2.0/include -I/apps/gent/RHEL8/zen2-ib/software/FFTW/3.3.10-GCC-12.2.0/include -I/apps/gent/RHEL8/zen2-ib/software/FlexiBLAS/3.2.1-GCC-12.2.0/include -I/apps/gent/RHEL8/zen2-ib/software/FlexiBLAS/3.2.1-GCC-12.2.0/include/flexiblas (previously undefined) | |
| == 2023-08-22 14:49:49,956 environment.py:93 INFO Environment variable CXX set to g++ (previously undefined) | |
| == 2023-08-22 14:49:49,957 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previously undefined) | |
| == 2023-08-22 14:49:49,957 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2023-08-22 14:49:49,957 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2023-08-22 14:49:49,957 environment.py:93 INFO Environment variable F77 set to gfortran (previously undefined) | |
| == 2023-08-22 14:49:49,957 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previously undefined) | |
| == 2023-08-22 14:49:49,957 environment.py:93 INFO Environment variable F90 set to gfortran (previously undefined) | |
| == 2023-08-22 14:49:49,957 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previously undefined) | |
| == 2023-08-22 14:49:49,957 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2023-08-22 14:49:49,957 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2023-08-22 14:49:49,957 environment.py:93 INFO Environment variable FC set to gfortran (previously undefined) | |
| == 2023-08-22 14:49:49,957 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previously undefined) | |
| == 2023-08-22 14:49:49,957 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2023-08-22 14:49:49,957 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2023-08-22 14:49:49,958 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2023-08-22 14:49:49,958 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2023-08-22 14:49:49,958 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/zen2-ib/software/FFTW/3.3.10-GCC-12.2.0/include (previously undefined) | |
| == 2023-08-22 14:49:49,958 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/zen2-ib/software/FFTW/3.3.10-GCC-12.2.0/include (previously undefined) | |
| == 2023-08-22 14:49:49,958 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/zen2-ib/software/FFTW/3.3.10-GCC-12.2.0/lib (previously undefined) | |
| == 2023-08-22 14:49:49,958 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/zen2-ib/software/FFTW/3.3.10-GCC-12.2.0/lib (previously undefined) | |
| == 2023-08-22 14:49:49,958 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previously undefined) | |
| == 2023-08-22 14:49:49,958 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previously undefined) | |
| == 2023-08-22 14:49:49,958 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) | |
| == 2023-08-22 14:49:49,958 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) | |
| == 2023-08-22 14:49:49,958 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2023-08-22 14:49:49,958 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2023-08-22 14:49:49,958 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2023-08-22 14:49:49,958 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2023-08-22 14:49:49,959 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/zen2-ib/software/FFTW/3.3.10-GCC-12.2.0/include (previously undefined) | |
| == 2023-08-22 14:49:49,959 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/zen2-ib/software/FFTW/3.3.10-GCC-12.2.0/include (previously undefined) | |
| == 2023-08-22 14:49:49,959 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/zen2-ib/software/FFTW/3.3.10-GCC-12.2.0/lib (previously undefined) | |
| == 2023-08-22 14:49:49,959 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/zen2-ib/software/FFTW/3.3.10-GCC-12.2.0/lib (previously undefined) | |
| == 2023-08-22 14:49:49,959 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previously undefined) | |
| == 2023-08-22 14:49:49,959 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previously undefined) | |
| == 2023-08-22 14:49:49,959 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) | |
| == 2023-08-22 14:49:49,959 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) | |
| == 2023-08-22 14:49:49,959 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2023-08-22 14:49:49,959 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2023-08-22 14:49:49,959 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2023-08-22 14:49:49,959 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2023-08-22 14:49:49,959 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previously undefined) | |
| == 2023-08-22 14:49:49,960 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) | |
| == 2023-08-22 14:49:49,960 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/zen2-ib/software/FlexiBLAS/3.2.1-GCC-12.2.0/include/flexiblas (previously undefined) | |
| == 2023-08-22 14:49:49,960 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/zen2-ib/software/FlexiBLAS/3.2.1-GCC-12.2.0/include/flexiblas (previously undefined) | |
| == 2023-08-22 14:49:49,960 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/zen2-ib/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib (previously undefined) | |
| == 2023-08-22 14:49:49,960 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/zen2-ib/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib (previously undefined) | |
| == 2023-08-22 14:49:49,960 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2023-08-22 14:49:49,960 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2023-08-22 14:49:49,960 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2023-08-22 14:49:49,960 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2023-08-22 14:49:49,960 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2023-08-22 14:49:49,960 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2023-08-22 14:49:49,960 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2023-08-22 14:49:49,960 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2023-08-22 14:49:49,960 environment.py:93 INFO Environment variable LDFLAGS set to -L/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/R/4.2.2-foss-2022b/lib64 -L/apps/gent/RHEL8/zen2-ib/software/Python/3.10.8-GCCcore-12.2.0/lib64 -L/apps/gent/RHEL8/zen2-ib/software/Python/3.10.8-GCCcore-12.2.0/lib -L/apps/gent/RHEL8/zen2-ib/software/SAMtools/1.17-GCC-12.2.0/lib64 -L/apps/gent/RHEL8/zen2-ib/software/SAMtools/1.17-GCC-12.2.0/lib -L/apps/gent/RHEL8/zen2-ib/software/FFTW/3.3.10-GCC-12.2.0/lib64 -L/apps/gent/RHEL8/zen2-ib/software/FFTW/3.3.10-GCC-12.2.0/lib -L/apps/gent/RHEL8/zen2-ib/software/ScaLAPACK/2.2.0-gompi-2022b-fb/lib64 -L/apps/gent/RHEL8/zen2-ib/software/ScaLAPACK/2.2.0-gompi-2022b-fb/lib -L/apps/gent/RHEL8/zen2-ib/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib64 -L/apps/gent/RHEL8/zen2-ib/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib -L/apps/gent/RHEL8/zen2-ib/software/GCCcore/12.2.0/lib64 -L/apps/gent/RHEL8/zen2-ib/software/GCCcore/12.2.0/lib (previously undefined) | |
| == 2023-08-22 14:49:49,961 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/R/4.2.2-foss-2022b/lib64 -L/apps/gent/RHEL8/zen2-ib/software/Python/3.10.8-GCCcore-12.2.0/lib64 -L/apps/gent/RHEL8/zen2-ib/software/Python/3.10.8-GCCcore-12.2.0/lib -L/apps/gent/RHEL8/zen2-ib/software/SAMtools/1.17-GCC-12.2.0/lib64 -L/apps/gent/RHEL8/zen2-ib/software/SAMtools/1.17-GCC-12.2.0/lib -L/apps/gent/RHEL8/zen2-ib/software/FFTW/3.3.10-GCC-12.2.0/lib64 -L/apps/gent/RHEL8/zen2-ib/software/FFTW/3.3.10-GCC-12.2.0/lib -L/apps/gent/RHEL8/zen2-ib/software/ScaLAPACK/2.2.0-gompi-2022b-fb/lib64 -L/apps/gent/RHEL8/zen2-ib/software/ScaLAPACK/2.2.0-gompi-2022b-fb/lib -L/apps/gent/RHEL8/zen2-ib/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib64 -L/apps/gent/RHEL8/zen2-ib/software/FlexiBLAS/3.2.1-GCC-12.2.0/lib -L/apps/gent/RHEL8/zen2-ib/software/GCCcore/12.2.0/lib64 -L/apps/gent/RHEL8/zen2-ib/software/GCCcore/12.2.0/lib (previously undefined) | |
| == 2023-08-22 14:49:49,961 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previously undefined) | |
| == 2023-08-22 14:49:49,961 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previously undefined) | |
| == 2023-08-22 14:49:49,961 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) | |
| == 2023-08-22 14:49:49,961 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran (previously undefined) | |
| == 2023-08-22 14:49:49,961 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) | |
| == 2023-08-22 14:49:49,961 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) | |
| == 2023-08-22 14:49:49,961 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) | |
| == 2023-08-22 14:49:49,961 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) | |
| == 2023-08-22 14:49:49,961 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previously undefined) | |
| == 2023-08-22 14:49:49,961 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previously undefined) | |
| == 2023-08-22 14:49:49,961 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) | |
| == 2023-08-22 14:49:49,961 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran (previously undefined) | |
| == 2023-08-22 14:49:49,962 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) | |
| == 2023-08-22 14:49:49,962 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran (previously undefined) | |
| == 2023-08-22 14:49:49,962 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) | |
| == 2023-08-22 14:49:49,962 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) | |
| == 2023-08-22 14:49:49,962 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) | |
| == 2023-08-22 14:49:49,962 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) | |
| == 2023-08-22 14:49:49,962 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) | |
| == 2023-08-22 14:49:49,962 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) | |
| == 2023-08-22 14:49:49,962 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) | |
| == 2023-08-22 14:49:49,962 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lpthread -lgfortran (previously undefined) | |
| == 2023-08-22 14:49:49,962 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2023-08-22 14:49:49,962 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2023-08-22 14:49:49,962 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2023-08-22 14:49:49,962 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2023-08-22 14:49:49,963 environment.py:93 INFO Environment variable MPICC set to mpicc (previously undefined) | |
| == 2023-08-22 14:49:49,963 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) | |
| == 2023-08-22 14:49:49,963 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previously undefined) | |
| == 2023-08-22 14:49:49,963 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) | |
| == 2023-08-22 14:49:49,963 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previously undefined) | |
| == 2023-08-22 14:49:49,963 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) | |
| == 2023-08-22 14:49:49,963 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previously undefined) | |
| == 2023-08-22 14:49:49,963 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) | |
| == 2023-08-22 14:49:49,963 environment.py:93 INFO Environment variable MPIFC set to mpifort (previously undefined) | |
| == 2023-08-22 14:49:49,963 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) | |
| == 2023-08-22 14:49:49,963 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/zen2-ib/software/OpenMPI/4.1.4-GCC-12.2.0/include (previously undefined) | |
| == 2023-08-22 14:49:49,963 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/zen2-ib/software/OpenMPI/4.1.4-GCC-12.2.0/include (previously undefined) | |
| == 2023-08-22 14:49:49,963 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/zen2-ib/software/OpenMPI/4.1.4-GCC-12.2.0/lib64 (previously undefined) | |
| == 2023-08-22 14:49:49,964 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/zen2-ib/software/OpenMPI/4.1.4-GCC-12.2.0/lib64 (previously undefined) | |
| == 2023-08-22 14:49:49,964 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/zen2-ib/software/OpenMPI/4.1.4-GCC-12.2.0/lib64/libmpi.so (previously undefined) | |
| == 2023-08-22 14:49:49,964 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/zen2-ib/software/OpenMPI/4.1.4-GCC-12.2.0/lib64/libmpi.so (previously undefined) | |
| == 2023-08-22 14:49:49,964 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) | |
| == 2023-08-22 14:49:49,964 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) | |
| == 2023-08-22 14:49:49,964 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previously undefined) | |
| == 2023-08-22 14:49:49,964 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) | |
| == 2023-08-22 14:49:49,964 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previously undefined) | |
| == 2023-08-22 14:49:49,964 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) | |
| == 2023-08-22 14:49:49,964 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) | |
| == 2023-08-22 14:49:49,964 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) | |
| == 2023-08-22 14:49:49,964 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) | |
| == 2023-08-22 14:49:49,964 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) | |
| == 2023-08-22 14:49:49,964 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previously undefined) | |
| == 2023-08-22 14:49:49,965 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) | |
| == 2023-08-22 14:49:49,965 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) | |
| == 2023-08-22 14:49:49,965 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) | |
| == 2023-08-22 14:49:49,965 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2023-08-22 14:49:49,965 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2023-08-22 14:49:49,965 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previously undefined) | |
| == 2023-08-22 14:49:49,965 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previously undefined) | |
| == 2023-08-22 14:49:49,965 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/zen2-ib/software/ScaLAPACK/2.2.0-gompi-2022b-fb/lib (previously undefined) | |
| == 2023-08-22 14:49:49,965 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/zen2-ib/software/ScaLAPACK/2.2.0-gompi-2022b-fb/lib (previously undefined) | |
| == 2023-08-22 14:49:49,965 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2023-08-22 14:49:49,965 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2023-08-22 14:49:49,965 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2023-08-22 14:49:49,965 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2023-08-22 14:49:49,966 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2023-08-22 14:49:49,966 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2023-08-22 14:49:49,966 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2023-08-22 14:49:49,966 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2023-08-22 14:49:49,966 easyblock.py:2112 INFO Using /tmp/vsc46128/leafcutter/0.2.9/foss-2022b-R-4.2.2/leafcutter-d02bc35309223d469c57ffd5fb4c59ff54971860/leafcutter as start dir | |
| == 2023-08-22 14:49:49,966 build_log.py:267 INFO ... (took 26 secs) | |
| == 2023-08-22 14:49:49,968 build_log.py:267 INFO configuring... | |
| == 2023-08-22 14:49:49,970 easyblock.py:3926 INFO Starting configure step | |
| == 2023-08-22 14:49:49,971 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-08-22 14:49:49,971 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2023-08-22 14:49:49,971 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2023-08-22 14:49:49,971 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='leafcutter', builddir='/tmp/vsc46128/leafcutter/0.2.9/foss-2022b-R-4.2.2', github_account='leafcutter', installdir='/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/leafcutter/0.2.9-foss-2022b-R-4.2.2', module_name='leafcutter/0.2.9-foss-2022b-R-4.2.2', mpi_cmd_prefix='mpirun -n 1', name='leafcutter', nameletter='l', nameletterlower='l', namelower='leafcutter', parallel='6', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.8', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.2', start_dir='/tmp/vsc46128/leafcutter/0.2.9/foss-2022b-R-4.2.2/leafcutter-d02bc35309223d469c57ffd5fb4c59ff54971860/leafcutter', toolchain_name='foss', toolchain_version='2022b', version='0.2.9', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='-R-4.2.2' | |
| == 2023-08-22 14:49:49,971 easyblock.py:3934 INFO Running method configure_step part of step configure | |
| == 2023-08-22 14:49:49,971 build_log.py:267 INFO building... | |
| == 2023-08-22 14:49:49,973 easyblock.py:3926 INFO Starting build step | |
| == 2023-08-22 14:49:49,973 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-08-22 14:49:49,973 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2023-08-22 14:49:49,973 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2023-08-22 14:49:49,974 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='leafcutter', builddir='/tmp/vsc46128/leafcutter/0.2.9/foss-2022b-R-4.2.2', github_account='leafcutter', installdir='/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/leafcutter/0.2.9-foss-2022b-R-4.2.2', module_name='leafcutter/0.2.9-foss-2022b-R-4.2.2', mpi_cmd_prefix='mpirun -n 1', name='leafcutter', nameletter='l', nameletterlower='l', namelower='leafcutter', parallel='6', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.8', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.2', start_dir='/tmp/vsc46128/leafcutter/0.2.9/foss-2022b-R-4.2.2/leafcutter-d02bc35309223d469c57ffd5fb4c59ff54971860/leafcutter', toolchain_name='foss', toolchain_version='2022b', version='0.2.9', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='-R-4.2.2' | |
| == 2023-08-22 14:49:49,974 easyblock.py:3934 INFO Running method build_step part of step build | |
| == 2023-08-22 14:49:49,974 build_log.py:267 INFO testing... | |
| == 2023-08-22 14:49:49,976 easyblock.py:3926 INFO Starting test step | |
| == 2023-08-22 14:49:49,976 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-08-22 14:49:49,976 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2023-08-22 14:49:49,977 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2023-08-22 14:49:49,977 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='leafcutter', builddir='/tmp/vsc46128/leafcutter/0.2.9/foss-2022b-R-4.2.2', github_account='leafcutter', installdir='/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/leafcutter/0.2.9-foss-2022b-R-4.2.2', module_name='leafcutter/0.2.9-foss-2022b-R-4.2.2', mpi_cmd_prefix='mpirun -n 1', name='leafcutter', nameletter='l', nameletterlower='l', namelower='leafcutter', parallel='6', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.8', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.2', start_dir='/tmp/vsc46128/leafcutter/0.2.9/foss-2022b-R-4.2.2/leafcutter-d02bc35309223d469c57ffd5fb4c59ff54971860/leafcutter', toolchain_name='foss', toolchain_version='2022b', version='0.2.9', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='-R-4.2.2' | |
| == 2023-08-22 14:49:49,977 easyblock.py:3934 INFO Running method test_step part of step test | |
| == 2023-08-22 14:49:49,977 build_log.py:267 INFO installing... | |
| == 2023-08-22 14:49:49,979 easyblock.py:3926 INFO Starting install step | |
| == 2023-08-22 14:49:49,979 easyconfig.py:1690 INFO Generating template values... | |
| == 2023-08-22 14:49:49,979 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2023-08-22 14:49:49,979 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2023-08-22 14:49:49,979 easyconfig.py:1709 INFO Template values: arch='x86_64', bitbucket_account='leafcutter', builddir='/tmp/vsc46128/leafcutter/0.2.9/foss-2022b-R-4.2.2', github_account='leafcutter', installdir='/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/leafcutter/0.2.9-foss-2022b-R-4.2.2', module_name='leafcutter/0.2.9-foss-2022b-R-4.2.2', mpi_cmd_prefix='mpirun -n 1', name='leafcutter', nameletter='l', nameletterlower='l', namelower='leafcutter', parallel='6', pymajver='3', pyminver='10', pyshortver='3.10', pyver='3.10.8', rmajver='4', rminver='2', rshortver='4.2', rver='4.2.2', start_dir='/tmp/vsc46128/leafcutter/0.2.9/foss-2022b-R-4.2.2/leafcutter-d02bc35309223d469c57ffd5fb4c59ff54971860/leafcutter', toolchain_name='foss', toolchain_version='2022b', version='0.2.9', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='-R-4.2.2' | |
| == 2023-08-22 14:49:49,980 easyblock.py:3934 INFO Running method stage_install_step part of step install | |
| == 2023-08-22 14:49:49,980 easyblock.py:3934 INFO Running method make_installdir part of step install | |
| == 2023-08-22 14:49:49,981 easyblock.py:1122 INFO Found old directory /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/leafcutter/0.2.9-foss-2022b-R-4.2.2 | |
| == 2023-08-22 14:49:50,037 filetools.py:383 INFO Path /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/leafcutter/0.2.9-foss-2022b-R-4.2.2 successfully removed. | |
| == 2023-08-22 14:49:50,037 easyblock.py:1130 INFO Removed old directory /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/leafcutter/0.2.9-foss-2022b-R-4.2.2 | |
| == 2023-08-22 14:49:50,037 filetools.py:1913 INFO Creating directory /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/leafcutter/0.2.9-foss-2022b-R-4.2.2 (parents: True, set_gid: False, sticky: False) | |
| == 2023-08-22 14:49:50,038 easyblock.py:3934 INFO Running method install_step part of step install | |
| == 2023-08-22 14:49:50,038 run.py:236 INFO running cmd: R CMD INSTALL /tmp/vsc46128/leafcutter/0.2.9/foss-2022b-R-4.2.2/leafcutter-d02bc35309223d469c57ffd5fb4c59ff54971860/leafcutter --library=/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/leafcutter/0.2.9-foss-2022b-R-4.2.2/ --no-clean-on-error | |
| == 2023-08-22 14:49:52,615 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:126 in __init__): cmd " R CMD INSTALL /tmp/vsc46128/leafcutter/0.2.9/foss-2022b-R-4.2.2/leafcutter-d02bc35309223d469c57ffd5fb4c59ff54971860/leafcutter --library=/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/leafcutter/0.2.9-foss-2022b-R-4.2.2/ --no-clean-on-error " exited with exit code 1 and output: | |
| ERROR: dependencies intervals, TailRank are not available for package leafcutter | |
| (at easybuild/tools/run.py:643 in parse_cmd_output) | |
| == 2023-08-22 14:49:52,615 build_log.py:267 INFO ... (took 2 secs) | |
| == 2023-08-22 14:49:52,617 filetools.py:2014 INFO Removing lock /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/.locks/_data_gent_461_vsc46128_easybuild_RHEL8_zen2-ib_software_leafcutter_0.2.9-foss-2022b-R-4.2.2.lock... | |
| == 2023-08-22 14:49:52,619 filetools.py:383 INFO Path /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/.locks/_data_gent_461_vsc46128_easybuild_RHEL8_zen2-ib_software_leafcutter_0.2.9-foss-2022b-R-4.2.2.lock successfully removed. | |
| == 2023-08-22 14:49:52,619 filetools.py:2018 INFO Lock removed: /data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/.locks/_data_gent_461_vsc46128_easybuild_RHEL8_zen2-ib_software_leafcutter_0.2.9-foss-2022b-R-4.2.2.lock | |
| == 2023-08-22 14:49:52,619 easyblock.py:4257 WARNING build failed (first 300 chars): cmd " R CMD INSTALL /tmp/vsc46128/leafcutter/0.2.9/foss-2022b-R-4.2.2/leafcutter-d02bc35309223d469c57ffd5fb4c59ff54971860/leafcutter --library=/data/gent/461/vsc46128/easybuild/RHEL8/zen2-ib/software/leafcutter/0.2.9-foss-2022b-R-4.2.2/ --no-clean-on-error " exited with exit code 1 and output: | |
| ERR | |
| == 2023-08-22 14:49:52,620 easyblock.py:328 INFO Closing log for application name leafcutter version 0.2.9 |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment