cmake -DBUILD_TYPE=COINOR ../contrib

xyz

immz1179:contrib-build lars$ cmake -DBUILD_TYPE=COINOR ../contrib
-- The C compiler identification is AppleClang 9.0.0.9000038
-- The CXX compiler identification is AppleClang 9.0.0.9000038
-- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
-- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
-- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- ADDRESSMODEL IS: 64 bit
-- Sysroot for OSX was set to /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk. Adding the following flags whenever possible/needed:

-- --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.13.sdk
-- BUILD_TYPE: COINOR (one of: ALL;SEQAN;LIBSVM;XERCESC;BOOST;COINOR;BZIP2;ZLIB;GLPK;EIGEN;WILDMAGIC;SQLITE;KISSFFT)
-- FORCE_REBUILD: OFF
-- NUMBER_OF_JOBS: 2 (maximal number of concurrent compile jobs)
-- Downloading COINOR .. 
-- Downloading COINOR .. skipped (already downloaded)
-- Validating archive for COINOR .. 
-- Validating archive for COINOR .. done
-- Extracting COINOR .. 
-- Extracting COINOR .. skipped (already exists)
-- Patching /Users/lars/Code/contrib-build/src/CoinMP-1.8.3/CoinUtils/configure ... skipped (already applied)
-- Patching /Users/lars/Code/contrib-build/src/CoinMP-1.8.3/Clp/configure ... skipped (already applied)
-- Configure COIN-OR library (./configure -C --prefix=/Users/lars/Code/contrib-build --enable-static=yes --enable-shared=no --with-lapack=no --with-blas=no ADD_FFLAGS='' ADD_CFLAGS='' ADD_CXXFLAGS='  -fPIC' --disable-dependency-tracking CXX=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ CC=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc)
-- Configure COIN-OR library (./configure -C --prefix=/Users/lars/Code/contrib-build --enable-static=yes --enable-shared=no --with-lapack=no --with-blas=no ADD_FFLAGS='' ADD_CFLAGS='' ADD_CXXFLAGS='  -fPIC' --disable-dependency-tracking CXX=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++ CC=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc) .. failed
CMake Error at libraries.cmake/coinor.cmake:144 (message):
  configure: loading cache config.cache

  checking for egrep...  (cached) grep -E

  checking whether ln -s works...  yes

  checking for a BSD-compatible install...  (cached) /usr/bin/install -c

  checking whether build environment is sane...  yes

  checking for gawk...  (cached) awk

  checking whether make sets $(MAKE)...  (cached) yes

  checking whether to enable maintainer-specific portions of Makefiles...  no

  checking whether source of project Sample is available and should be
  compiled...  yes, source in Data/Sample

  checking whether source of project CoinUtils is available and should be
  compiled...  yes, source in CoinUtils

  checking whether source of project Osi is available and should be
  compiled...  yes, source in Osi

  checking whether source of project Clp is available and should be
  compiled...  yes, source in Clp

  checking whether source of project Cgl is available and should be
  compiled...  yes, source in Cgl

  checking whether source of project Cbc is available and should be
  compiled...  yes, source in Cbc

  checking whether source of project CoinMP is available and should be
  compiled...  yes, source in CoinMP

  checking which command should be used to link input files...  ln -s

  configure: creating ./config.status

  config.status: creating Makefile

  configure: configuring in Data/Sample

  configure: running /bin/sh './configure'
  --prefix=/Users/lars/Code/contrib-build '-C'
  '--prefix=/Users/lars/Code/contrib-build' '--enable-static=yes'
  '--enable-shared=no' '--with-lapack=no' '--with-blas=no' 'ADD_FFLAGS='
  'ADD_CFLAGS=' 'ADD_CXXFLAGS= -fPIC' '--disable-dependency-tracking'
  'CXX=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++'
  'CC=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc'
  --cache-file=../../config.cache --srcdir=.

  configure: loading cache ../../config.cache

  checking for svnversion...  (cached) yes

  checking for egrep...  (cached) grep -E

  checking whether ln -s works...  yes

  checking for a BSD-compatible install...  (cached) /usr/bin/install -c

  checking whether build environment is sane...  yes

  checking for gawk...  (cached) awk

  checking whether make sets $(MAKE)...  (cached) yes

  checking whether to enable maintainer-specific portions of Makefiles...  no

  checking whether this is a VPATH configuration...  no

  checking build system type...  (cached) i386-apple-darwin17.2.0

  checking which command should be used to link input files...  ln -s

  configure: creating ./config.status

  config.status: creating Makefile

  config.status: creating coindatasample.pc

  config.status: creating coindatasample-uninstalled.pc

  configure: In case of trouble, first consult the troubleshooting page at
  https://projects.coin-or.org/BuildTools/wiki/user-troubleshooting

  configure: Configuration of DataSample successful

  configure: configuring in CoinUtils

  configure: running /bin/sh './configure'
  --prefix=/Users/lars/Code/contrib-build '-C'
  '--prefix=/Users/lars/Code/contrib-build' '--enable-static=yes'
  '--enable-shared=no' '--with-lapack=no' '--with-blas=no' 'ADD_FFLAGS='
  'ADD_CFLAGS=' 'ADD_CXXFLAGS= -fPIC' '--disable-dependency-tracking'
  'CXX=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++'
  'CC=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc'
  --cache-file=../config.cache --srcdir=.

  configure: loading cache ../config.cache

  checking build system type...  (cached) i386-apple-darwin17.2.0

  checking for svnversion...  (cached) yes

  checking whether we want to compile in debug mode...  no

  checking for C compiler default output file name...  a.out

  checking whether the C compiler works...  yes

  checking whether we are cross compiling...  no

  checking for suffix of executables...

  checking for suffix of object files...  o

  checking whether we are using the GNU C compiler...  yes

  checking whether
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
  accepts -g...  yes

  checking for
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
  option to accept ANSI C...  none needed

  configure: C compiler options are: -O3 -pipe -DNDEBUG -Wimplicit
  -Wparentheses -Wsequence-point -Wreturn-type -Wcast-qual -Wall
  -Wno-unknown-pragmas -Wno-long-long -DCOINUTILS_BUILD

  checking whether we are using the GNU C++ compiler...  yes

  checking whether
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
  accepts -g...  yes

  checking whether C++ compiler
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
  works...  yes

  configure: C++ compiler options are: -O3 -pipe -DNDEBUG -Wparentheses
  -Wreturn-type -Wcast-qual -Wall -Wpointer-arith -Wwrite-strings
  -Wconversion -Wno-unknown-pragmas -Wno-long-long -fPIC -DCOINUTILS_BUILD

  configure: Trying to determine Fortran compiler name

  checking for xlf_r...  no

  checking for fort77...  no

  checking for gfortran...  no

  checking for ifort...  no

  checking for g95...  no

  checking for f77...  no

  checking for g77...  no

  checking for pgf90...  no

  checking for pgf77...  no

  checking for ifc...  no

  checking for frt...  no

  checking for af77...  no

  configure: WARNING: Failed to find a Fortran compiler!

  configure: Fortran compiler options are:

  checking for egrep...  (cached) grep -E

  checking whether ln -s works...  yes

  checking for a BSD-compatible install...  (cached) /usr/bin/install -c

  checking whether build environment is sane...  yes

  checking for gawk...  (cached) awk

  checking whether make sets $(MAKE)...  (cached) yes

  checking for style of include used by make...  GNU

  checking dependency style of
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc...
  none

  checking dependency style of
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++...
  none

  checking whether to enable maintainer-specific portions of Makefiles...  no

  checking host system type...  i386-apple-darwin17.2.0

  checking for a sed that does not truncate output...  /usr/bin/sed

  checking for ld used by
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc...
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld


  checking if the linker
  (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld)
  is GNU ld...  no

  checking for
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
  option to reload object files...  -r

  checking for BSD-compatible nm...  /usr/bin/nm -B

  checking how to recognise dependent libraries...  pass_all

  checking how to run the C preprocessor...
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
  -E

  checking for ANSI C header files...  no

  checking for sys/types.h...  no

  checking for sys/stat.h...  no

  checking for stdlib.h...  no

  checking for string.h...  no

  checking for memory.h...  no

  checking for strings.h...  no

  checking for inttypes.h...  no

  checking for stdint.h...  no

  checking for unistd.h...  no

  checking dlfcn.h usability...  no

  checking dlfcn.h presence...  no

  checking for dlfcn.h...  no

  checking how to run the C++ preprocessor...
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
  -E

  checking the maximum length of command line arguments...  196608

  checking command to parse /usr/bin/nm -B output from
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
  object...  ok

  checking for objdir...  .libs

  checking for ar...  ar

  checking for ranlib...  ranlib

  checking for strip...  strip

  checking if
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
  supports -fno-rtti -fno-exceptions...  yes

  checking for
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
  option to produce PIC...  -fno-common

  checking if
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
  PIC flag -fno-common works...  yes

  checking if
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
  static flag -static works...  no

  checking if
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
  supports -c -o file.o...  yes

  checking whether the
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc
  linker
  (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld)
  supports shared libraries...  yes

  checking dynamic linker characteristics...  darwin17.2.0 dyld

  checking how to hardcode library paths into programs...  immediate

  checking whether stripping libraries is possible...  yes

  checking if libtool supports shared libraries...  yes

  checking whether to build shared libraries...  no

  checking whether to build static libraries...  yes

  configure: creating libtool

  appending configuration tag "CXX" to libtool

  checking for ld used by
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++...
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld


  checking if the linker
  (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld)
  is GNU ld...  no

  checking whether the
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
  linker
  (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld)
  supports shared libraries...  yes

  checking for
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
  option to produce PIC...  -fno-common

  checking if
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
  PIC flag -fno-common works...  yes

  checking if
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
  static flag -static works...  no

  checking if
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
  supports -c -o file.o...  yes

  checking whether the
  /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/c++
  linker
  (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld)
  supports shared libraries...  yes

  checking dynamic linker characteristics...  darwin17.2.0 dyld

  checking how to hardcode library paths into programs...  immediate

  appending configuration tag "F77" to libtool

  checking if libtool supports shared libraries...  yes

  checking whether to build shared libraries...  no

  checking whether to build static libraries...  yes

  checking for unavailable option to produce PIC...  -fno-common

  checking if unavailable PIC flag -fno-common works...  no

  checking if unavailable static flag -static works...  no

  checking if unavailable supports -c -o file.o...  no

  checking whether the unavailable linker
  (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld)
  supports shared libraries...  yes

  checking dynamic linker characteristics...  ./configure: line 17532:
  unavailable: command not found

  ./configure: line 17703: unavailable: command not found

  darwin17.2.0 dyld

  checking how to hardcode library paths into programs...  immediate

  configure: Build is "i386-apple-darwin17.2.0".

  configure: Applying patches to libtool for Darwin

  checking if library version is set...  13:10:10

  checking cmath usability...  no

  checking cmath presence...  no

  checking for cmath...  no

  checking math.h usability...  no

  checking math.h presence...  no

  checking for math.h...  no

  checking cfloat usability...  no

  checking cfloat presence...  yes

  configure: WARNING: cfloat: present but cannot be compiled

  configure: WARNING: cfloat: check for missing prerequisite headers?

  configure: WARNING: cfloat: see the Autoconf documentation

  configure: WARNING: cfloat: section "Present But Cannot Be Compiled"

  configure: WARNING: cfloat: proceeding with the preprocessor's result

  configure: WARNING: cfloat: in the future, the compiler will take
  precedence

  configure: WARNING: ## ----------------------------------------------------
  ##

  configure: WARNING: ## Report this to http://projects.coin-or.org/CoinUtils
  ##

  configure: WARNING: ## ----------------------------------------------------
  ##

  checking for cfloat...  yes

  checking cieeefp usability...  no

  checking cieeefp presence...  no

  checking for cieeefp...  no

  checking ieeefp.h usability...  no

  checking ieeefp.h presence...  no

  checking for ieeefp.h...  no

  checking whether isfinite is declared...  no

  checking whether finite is declared...  no

  checking whether _finite is declared...  no

  configure: WARNING: Cannot find C-function for checking Inf.

  checking for cmath...  (cached) no

  checking for math.h...  (cached) no

  checking for cfloat...  (cached) yes

  checking for cieeefp...  (cached) no

  checking for ieeefp.h...  (cached) no

  checking whether isnan is declared...  no

  checking whether std::isnan(42.42) is declared...  no

  checking whether _isnan is declared...  no

  checking whether isnand is declared...  no

  configure: WARNING: Cannot find C-function for checking NaN.

  checking cinttypes usability...  no

  checking cinttypes presence...  no

  checking for cinttypes...  no

  checking for inttypes.h...  (cached) no

  checking cstdint usability...  no

  checking cstdint presence...  yes

  configure: WARNING: cstdint: present but cannot be compiled

  configure: WARNING: cstdint: check for missing prerequisite headers?

  configure: WARNING: cstdint: see the Autoconf documentation

  configure: WARNING: cstdint: section "Present But Cannot Be Compiled"

  configure: WARNING: cstdint: proceeding with the preprocessor's result

  configure: WARNING: cstdint: in the future, the compiler will take
  precedence

  configure: WARNING: ## ----------------------------------------------------
  ##

  configure: WARNING: ## Report this to http://projects.coin-or.org/CoinUtils
  ##

  configure: WARNING: ## ----------------------------------------------------
  ##

  checking for cstdint...  yes

  checking for int64_t...  no

  checking for long long...  no

  checking size of long long...  0

  checking for long...  no

  checking size of long...  0

  checking for int...  no

  checking size of int...  0

  configure: error: Cannot find integer type with 64 bits

  configure: error: /bin/sh './configure' failed for CoinUtils
Call Stack (most recent call first):
  CMakeLists.txt:525 (OPENMS_CONTRIB_BUILD_COINOR)


-- Configuring incomplete, errors occurred!
See also "/Users/lars/Code/contrib-build/CMakeFiles/CMakeOutput.log".
immz1179:contrib-build lars$ immz1179:contrib-build lars$ cmake -DBUILD_TYPE=COINOR ../contrib
-bash: immz1179:contrib-build: command not found
immz1179:contrib-build lars$