compile phaistos

make_phaistos.sh

#!/usr/bin/env bash

export BOOST_ROOT_DIR=/home/lab/opt/boost-1.58_gcc-1.61
export BOOST_ROOT=$BOOST_ROOT_DIR
export LD_LIBRARY_PATH=$BOOST_ROOT_DIR/lib #:/usr/lib64:$LD_LIBRARY_PATH

export CC=gcc-6; export CXX=g++-6

mkdir $1
cd $1
cmake -DBoost_NO_BOOST_CMAKE=TRUE -DBoost_NO_SYSTEM_PATHS=TRUE -DBOOST_ROOT_DIR=$BOOST_ROOT_DIR -DBOOST_ROOT=$BOOST_ROOT_DIR -DBoost_INCLUDE_DIR=$BOOST_ROOT_DIR/include -DBoost_PROGRAM_OPTIONS_LIBRARY=$BOOST_ROOT_DIR/lib/libboost_program_options.a -DBoost_SERIALIZATION_LIBRARY=$BOOST_ROOT_DIR/lib/libboost_serialization.a -DBoost_THREAD_LIBRARY=$BOOST_ROOT_DIR/lib/libboost_thread.a -DBoost_UNIT_TEST_FRAMEWORK_LIBRARY=$BOOST_ROOT_DIR/lib/libboost_unit_test_framework.a  -DBoost_REGEX_LIBRARY=$BOOST_ROOT_DIR/lib/libboost_regex.a -DBoost_PROGRAM_OPTIONS_LIBRARY_RELEASE=$BOOST_ROOT_DIR/lib/libboost_program_options.a -DBoost_SERIALIZATION_LIBRARY_RELEASE=$BOOST_ROOT_DIR/lib/libboost_serialization.a -DBoost_THREAD_LIBRARY_RELEASE=$BOOST_ROOT_DIR/lib/libboost_thread.a -DBoost_UNIT_TEST_FRAMEWORK_LIBRARY_RELEASE=$BOOST_ROOT_DIR/lib/libboost_unit_test_framework.a  -DBoost_REGEX_LIBRARY_RELEASE=$BOOST_ROOT_DIR/lib/libboost_regex.a -DPHAISTOS_MODULE_DISABLE="applications_backbone_dbn|applications|camshift|distance|distance_dev|energy_archive|git|inference|irrm|mocapy|mumu|opls|pleiades|ppm|profasi|regression|saxs|sidechain_dbns|trajectory|typhon|visible_volume|doc|crisp|charmm" ..
make -j2