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Created Sep 14, 2017

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1. van Rijswijk,M., Beirnaert,C., Caron,C., Cascante,M., Dominguez,V., Dunn,W.B., Ebbels,T.M.D., Giacomoni,F., Gonzalez-Beltran,A., Hankemeier,T., {\em et al.,} (2017) The future of metabolomics in ELIXIR. {\em F1000Research,}, {\bf 6}, 1649+. undefined
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29. Kutmon,M., Riutta,A., Nunes,N., Hanspers,K., Willighagen,E.L., Bohler,A., Mélius,J., Waagmeester,A., Sinha,S.R., Miller,R., {\em et al.,} (2015) WikiPathways: capturing the full diversity of pathway knowledge. {\em Nucleic Acids Res.,}, {\bf 44}, D488–D494. undefined
30. Jennen,D.G., Gaj,S., Giesbertz,P.J., van Delft,J.H., Evelo,C.T. and Kleinjans,J.C. (2010) Biotransformation pathway maps in WikiPathways enable direct visualization of drug metabolism related expression changes. {\em Drug Discov. Today,}, {\bf 15}, 851–858. undefined
31. Mastrokolias,A., Pool,R., Mina,E., Hettne,K., van Duijn,E., van der Mast,R., van Ommen,G., ’t Hoen,P., Prehn,C., Adamski,J., {\em et al.,} (2016) Integration of targeted metabolomics and transcriptomics identifies deregulation of phosphatidylcholine metabolism in Huntington’s disease peripheral blood samples. {\em Metabolomics,}, {\bf 12}, 137. undefined
32. Kohonen,P., Parkkinen,J.A., Willighagen,E.L., Ceder,R., Wennerberg,K., Kaski,S. and Grafström,R.C. (2017) A transcriptomics data-driven gene space accurately predicts liver cytopathology and drug-induced liver injury. {\em Nat. Commun.,}, {\bf 8}. undefined
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34. Kutmon,M., van Iersel,M.P., Bohler,A., Kelder,T., Nunes,N., Pico,A.R. and Evelo,C.T. (2015) PathVisio 3: an extendable pathway analysis toolbox. {\em PLoS Comput. Biol.,}, {\bf 11}, e1004085. undefined
35. van Iersel,M.P., Pico,A.R., Kelder,T., Gao,J., Ho,I., Hanspers,K., Conklin,B.R. and Evelo,C.T. (2010) The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services. {\em BMC Bioinf.,}, {\bf 11}, 5. undefined
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37. Bohler,A., Wu,G., Kutmon,M., Pradhana,L.A., Coort,S.L., Hanspers,K., Haw,R., Pico,A.R. and Evelo,C.T. (2016) Reactome from a WikiPathways perspective. {\em PLoS Comput. Biol.,}, {\bf 12}, e1004941. undefined
38. Afendi,F.M., Okada,T., Yamazaki,M., Hirai-Morita,A., Nakamura,Y., Nakamura,K., Ikeda,S., Takahashi,H., Altaf-Ul-Amin,M., Darusman,L.K., {\em et al.,} (2011) KNApSAcK family databases: integrated metabolite–plant species databases for multifaceted plant research. {\em Plant and Cell Physiol.,}, {\bf 53}, e1–e1. undefined
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42. Heckman,J., Chichester,C., Willighagen,E., Slenter,D. and Kutmon,M. (2017) Glucose-1-phosphate metabolism, version 94487 (Saccharomyces cerevisiae).
43. Username:Kdahlquist, Coort,S., Fidelman,N., van Iersel,M., Hanspers,K., Kelder,T., Bouwman,J., Pico,A., Willighagen,E., Kutmon,M., {\em et al.,} (2016) Glycolysis and Gluconeogenesis, version 90450 (Homo sapiens).
44. Username:Kdahlquist, Coort,S., Fidelman,N., van Iersel,M., Hanspers,K., Kelder,T., Bouwman,J., Pico,A., Willighagen,E., Kutmon,M., {\em et al.,} (2017) Glycolysis and Gluconeogenesis, version 93722 (Homo sapiens).
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