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September 12, 2015 17:48
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| scala> val conf = new org.apache.commons.configuration.BaseConfiguration() | |
| conf: org.apache.commons.configuration.BaseConfiguration = org.apache.commons.configuration.BaseConfiguration@3ada9e37 | |
| scala> conf.setProperty("storage.directory", "/media/ephemeral0/applicator/16s/bio4j") | |
| scala> conf.setProperty("storage.backend", "berkeleyje") | |
| scala> val graph = new com.bio4j.titan.model.ncbiTaxonomy.TitanNCBITaxonomyGraph( new com.bio4j.titan.util.DefaultTitanGraph( com.thinkaurelius.titan.core.TitanFactory.open(conf) ) ) | |
| 17:46:21.350 [main] DEBUG c.t.t.d.b.BerkeleyJEStoreManager - Opened database system_properties | |
| java.lang.Throwable: null | |
| at com.thinkaurelius.titan.diskstorage.berkeleyje.BerkeleyJEStoreManager.openDatabase(BerkeleyJEStoreManager.java:169) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.berkeleyje.BerkeleyJEStoreManager.openDatabase(BerkeleyJEStoreManager.java:34) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.keycolumnvalue.keyvalue.OrderedKeyValueStoreManagerAdapter.openDatabase(OrderedKeyValueStoreManagerAdapter.java:69) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.keycolumnvalue.keyvalue.OrderedKeyValueStoreManagerAdapter.openDatabase(OrderedKeyValueStoreManagerAdapter.java:23) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.Backend.getStandaloneGlobalConfiguration(Backend.java:391) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.graphdb.configuration.GraphDatabaseConfiguration.<init>(GraphDatabaseConfiguration.java:1260) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.core.TitanFactory.open(TitanFactory.java:91) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.core.TitanFactory.open(TitanFactory.java:71) [dist.jar:0.1.0-SNAPSHOT] | |
| at $line6.$read$$iw$$iw$.<init>(<console>:8) [scala-library.jar:na] | |
| at $line6.$read$$iw$$iw$.<clinit>(<console>) [scala-library.jar:na] | |
| at $line6.$eval$.$print$lzycompute(<console>:7) [scala-library.jar:na] | |
| at $line6.$eval$.$print(<console>:6) [scala-library.jar:na] | |
| at $line6.$eval.$print(<console>) [scala-library.jar:na] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_51] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_51] | |
| at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_51] | |
| at java.lang.reflect.Method.invoke(Method.java:497) ~[na:1.8.0_51] | |
| at scala.tools.nsc.interpreter.IMain$ReadEvalPrint.call(IMain.scala:773) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$Request.loadAndRun(IMain.scala:1020) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:627) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:626) [na:na] | |
| at scala.reflect.internal.util.ScalaClassLoader$class.asContext(ScalaClassLoader.scala:31) [na:na] | |
| at scala.reflect.internal.util.AbstractFileClassLoader.asContext(AbstractFileClassLoader.scala:19) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$WrappedRequest.loadAndRunReq(IMain.scala:626) [na:na] | |
| at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:558) [na:na] | |
| at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:554) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.reallyInterpret$1(ILoop.scala:804) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.interpretStartingWith(ILoop.scala:849) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.command(ILoop.scala:707) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.processLine(ILoop.scala:405) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.loop(ILoop.scala:431) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply$mcZ$sp(ILoop.scala:920) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply(ILoop.scala:906) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply(ILoop.scala:906) [na:na] | |
| at scala.reflect.internal.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:97) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.process(ILoop.scala:906) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.runTarget$1(MainGenericRunner.scala:74) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.run$1(MainGenericRunner.scala:87) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.process(MainGenericRunner.scala:98) [na:na] | |
| at scala.tools.nsc.MainGenericRunner$.main(MainGenericRunner.scala:103) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.main(MainGenericRunner.scala) [na:na] | |
| 17:46:21.406 [main] DEBUG c.t.t.d.k.k.OrderedKeyValueStoreAdapter - Used key length 0 for database system_properties | |
| 17:46:21.844 [main] DEBUG c.t.t.d.b.BerkeleyJEStoreManager - Removed database system_properties | |
| 17:46:21.907 [main] INFO c.t.t.g.c.GraphDatabaseConfiguration - Generated unique-instance-id=0a4d94a82713-ip-10-77-148-1681 | |
| 17:46:22.679 [main] INFO c.t.titan.diskstorage.Backend - Initiated backend operations thread pool of size 2 | |
| 17:46:22.694 [main] DEBUG c.t.t.d.b.BerkeleyJEStoreManager - Opened database titan_ids | |
| java.lang.Throwable: null | |
| at com.thinkaurelius.titan.diskstorage.berkeleyje.BerkeleyJEStoreManager.openDatabase(BerkeleyJEStoreManager.java:169) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.berkeleyje.BerkeleyJEStoreManager.openDatabase(BerkeleyJEStoreManager.java:34) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.keycolumnvalue.keyvalue.OrderedKeyValueStoreManagerAdapter.openDatabase(OrderedKeyValueStoreManagerAdapter.java:69) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.keycolumnvalue.keyvalue.OrderedKeyValueStoreManagerAdapter.openDatabase(OrderedKeyValueStoreManagerAdapter.java:23) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.Backend.initialize(Backend.java:211) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.graphdb.configuration.GraphDatabaseConfiguration.getBackend(GraphDatabaseConfiguration.java:1732) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.graphdb.database.StandardTitanGraph.<init>(StandardTitanGraph.java:105) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.core.TitanFactory.open(TitanFactory.java:91) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.core.TitanFactory.open(TitanFactory.java:71) [dist.jar:0.1.0-SNAPSHOT] | |
| at $line6.$read$$iw$$iw$.<init>(<console>:8) [scala-library.jar:na] | |
| at $line6.$read$$iw$$iw$.<clinit>(<console>) [scala-library.jar:na] | |
| at $line6.$eval$.$print$lzycompute(<console>:7) [scala-library.jar:na] | |
| at $line6.$eval$.$print(<console>:6) [scala-library.jar:na] | |
| at $line6.$eval.$print(<console>) [scala-library.jar:na] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_51] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_51] | |
| at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_51] | |
| at java.lang.reflect.Method.invoke(Method.java:497) ~[na:1.8.0_51] | |
| at scala.tools.nsc.interpreter.IMain$ReadEvalPrint.call(IMain.scala:773) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$Request.loadAndRun(IMain.scala:1020) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:627) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:626) [na:na] | |
| at scala.reflect.internal.util.ScalaClassLoader$class.asContext(ScalaClassLoader.scala:31) [na:na] | |
| at scala.reflect.internal.util.AbstractFileClassLoader.asContext(AbstractFileClassLoader.scala:19) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$WrappedRequest.loadAndRunReq(IMain.scala:626) [na:na] | |
| at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:558) [na:na] | |
| at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:554) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.reallyInterpret$1(ILoop.scala:804) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.interpretStartingWith(ILoop.scala:849) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.command(ILoop.scala:707) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.processLine(ILoop.scala:405) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.loop(ILoop.scala:431) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply$mcZ$sp(ILoop.scala:920) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply(ILoop.scala:906) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply(ILoop.scala:906) [na:na] | |
| at scala.reflect.internal.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:97) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.process(ILoop.scala:906) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.runTarget$1(MainGenericRunner.scala:74) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.run$1(MainGenericRunner.scala:87) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.process(MainGenericRunner.scala:98) [na:na] | |
| at scala.tools.nsc.MainGenericRunner$.main(MainGenericRunner.scala:103) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.main(MainGenericRunner.scala) [na:na] | |
| 17:46:22.695 [main] DEBUG c.t.t.d.k.k.OrderedKeyValueStoreAdapter - Used key length 8 for database titan_ids | |
| 17:46:22.698 [main] DEBUG c.t.t.d.b.BerkeleyJEStoreManager - Opened database edgestore | |
| java.lang.Throwable: null | |
| at com.thinkaurelius.titan.diskstorage.berkeleyje.BerkeleyJEStoreManager.openDatabase(BerkeleyJEStoreManager.java:169) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.berkeleyje.BerkeleyJEStoreManager.openDatabase(BerkeleyJEStoreManager.java:34) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.keycolumnvalue.keyvalue.OrderedKeyValueStoreManagerAdapter.openDatabase(OrderedKeyValueStoreManagerAdapter.java:69) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.keycolumnvalue.keyvalue.OrderedKeyValueStoreManagerAdapter.openDatabase(OrderedKeyValueStoreManagerAdapter.java:23) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.Backend.initialize(Backend.java:222) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.graphdb.configuration.GraphDatabaseConfiguration.getBackend(GraphDatabaseConfiguration.java:1732) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.graphdb.database.StandardTitanGraph.<init>(StandardTitanGraph.java:105) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.core.TitanFactory.open(TitanFactory.java:91) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.core.TitanFactory.open(TitanFactory.java:71) [dist.jar:0.1.0-SNAPSHOT] | |
| at $line6.$read$$iw$$iw$.<init>(<console>:8) [scala-library.jar:na] | |
| at $line6.$read$$iw$$iw$.<clinit>(<console>) [scala-library.jar:na] | |
| at $line6.$eval$.$print$lzycompute(<console>:7) [scala-library.jar:na] | |
| at $line6.$eval$.$print(<console>:6) [scala-library.jar:na] | |
| at $line6.$eval.$print(<console>) [scala-library.jar:na] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_51] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_51] | |
| at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_51] | |
| at java.lang.reflect.Method.invoke(Method.java:497) ~[na:1.8.0_51] | |
| at scala.tools.nsc.interpreter.IMain$ReadEvalPrint.call(IMain.scala:773) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$Request.loadAndRun(IMain.scala:1020) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:627) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:626) [na:na] | |
| at scala.reflect.internal.util.ScalaClassLoader$class.asContext(ScalaClassLoader.scala:31) [na:na] | |
| at scala.reflect.internal.util.AbstractFileClassLoader.asContext(AbstractFileClassLoader.scala:19) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$WrappedRequest.loadAndRunReq(IMain.scala:626) [na:na] | |
| at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:558) [na:na] | |
| at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:554) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.reallyInterpret$1(ILoop.scala:804) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.interpretStartingWith(ILoop.scala:849) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.command(ILoop.scala:707) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.processLine(ILoop.scala:405) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.loop(ILoop.scala:431) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply$mcZ$sp(ILoop.scala:920) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply(ILoop.scala:906) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply(ILoop.scala:906) [na:na] | |
| at scala.reflect.internal.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:97) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.process(ILoop.scala:906) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.runTarget$1(MainGenericRunner.scala:74) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.run$1(MainGenericRunner.scala:87) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.process(MainGenericRunner.scala:98) [na:na] | |
| at scala.tools.nsc.MainGenericRunner$.main(MainGenericRunner.scala:103) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.main(MainGenericRunner.scala) [na:na] | |
| 17:46:22.710 [main] DEBUG c.t.t.d.k.k.OrderedKeyValueStoreAdapter - Used key length 8 for database edgestore | |
| 17:46:22.710 [main] DEBUG c.t.t.d.b.BerkeleyJEStoreManager - Opened database graphindex | |
| java.lang.Throwable: null | |
| at com.thinkaurelius.titan.diskstorage.berkeleyje.BerkeleyJEStoreManager.openDatabase(BerkeleyJEStoreManager.java:169) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.berkeleyje.BerkeleyJEStoreManager.openDatabase(BerkeleyJEStoreManager.java:34) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.keycolumnvalue.keyvalue.OrderedKeyValueStoreManagerAdapter.openDatabase(OrderedKeyValueStoreManagerAdapter.java:69) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.keycolumnvalue.keyvalue.OrderedKeyValueStoreManagerAdapter.openDatabase(OrderedKeyValueStoreManagerAdapter.java:23) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.Backend.initialize(Backend.java:223) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.graphdb.configuration.GraphDatabaseConfiguration.getBackend(GraphDatabaseConfiguration.java:1732) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.graphdb.database.StandardTitanGraph.<init>(StandardTitanGraph.java:105) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.core.TitanFactory.open(TitanFactory.java:91) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.core.TitanFactory.open(TitanFactory.java:71) [dist.jar:0.1.0-SNAPSHOT] | |
| at $line6.$read$$iw$$iw$.<init>(<console>:8) [scala-library.jar:na] | |
| at $line6.$read$$iw$$iw$.<clinit>(<console>) [scala-library.jar:na] | |
| at $line6.$eval$.$print$lzycompute(<console>:7) [scala-library.jar:na] | |
| at $line6.$eval$.$print(<console>:6) [scala-library.jar:na] | |
| at $line6.$eval.$print(<console>) [scala-library.jar:na] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_51] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_51] | |
| at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_51] | |
| at java.lang.reflect.Method.invoke(Method.java:497) ~[na:1.8.0_51] | |
| at scala.tools.nsc.interpreter.IMain$ReadEvalPrint.call(IMain.scala:773) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$Request.loadAndRun(IMain.scala:1020) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:627) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:626) [na:na] | |
| at scala.reflect.internal.util.ScalaClassLoader$class.asContext(ScalaClassLoader.scala:31) [na:na] | |
| at scala.reflect.internal.util.AbstractFileClassLoader.asContext(AbstractFileClassLoader.scala:19) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$WrappedRequest.loadAndRunReq(IMain.scala:626) [na:na] | |
| at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:558) [na:na] | |
| at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:554) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.reallyInterpret$1(ILoop.scala:804) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.interpretStartingWith(ILoop.scala:849) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.command(ILoop.scala:707) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.processLine(ILoop.scala:405) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.loop(ILoop.scala:431) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply$mcZ$sp(ILoop.scala:920) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply(ILoop.scala:906) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply(ILoop.scala:906) [na:na] | |
| at scala.reflect.internal.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:97) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.process(ILoop.scala:906) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.runTarget$1(MainGenericRunner.scala:74) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.run$1(MainGenericRunner.scala:87) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.process(MainGenericRunner.scala:98) [na:na] | |
| at scala.tools.nsc.MainGenericRunner$.main(MainGenericRunner.scala:103) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.main(MainGenericRunner.scala) [na:na] | |
| 17:46:22.711 [main] DEBUG c.t.t.d.k.k.OrderedKeyValueStoreAdapter - Used key length 0 for database graphindex | |
| 17:46:22.712 [main] DEBUG c.t.t.d.b.BerkeleyJEStoreManager - Opened database txlog | |
| java.lang.Throwable: null | |
| at com.thinkaurelius.titan.diskstorage.berkeleyje.BerkeleyJEStoreManager.openDatabase(BerkeleyJEStoreManager.java:169) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.berkeleyje.BerkeleyJEStoreManager.openDatabase(BerkeleyJEStoreManager.java:34) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.keycolumnvalue.keyvalue.OrderedKeyValueStoreManagerAdapter.openDatabase(OrderedKeyValueStoreManagerAdapter.java:69) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.keycolumnvalue.keyvalue.OrderedKeyValueStoreManagerAdapter.openDatabase(OrderedKeyValueStoreManagerAdapter.java:23) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.log.kcvs.KCVSLogManager.openLog(KCVSLogManager.java:192) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.Backend.initialize(Backend.java:261) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.graphdb.configuration.GraphDatabaseConfiguration.getBackend(GraphDatabaseConfiguration.java:1732) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.graphdb.database.StandardTitanGraph.<init>(StandardTitanGraph.java:105) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.core.TitanFactory.open(TitanFactory.java:91) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.core.TitanFactory.open(TitanFactory.java:71) [dist.jar:0.1.0-SNAPSHOT] | |
| at $line6.$read$$iw$$iw$.<init>(<console>:8) [scala-library.jar:na] | |
| at $line6.$read$$iw$$iw$.<clinit>(<console>) [scala-library.jar:na] | |
| at $line6.$eval$.$print$lzycompute(<console>:7) [scala-library.jar:na] | |
| at $line6.$eval$.$print(<console>:6) [scala-library.jar:na] | |
| at $line6.$eval.$print(<console>) [scala-library.jar:na] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_51] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_51] | |
| at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_51] | |
| at java.lang.reflect.Method.invoke(Method.java:497) ~[na:1.8.0_51] | |
| at scala.tools.nsc.interpreter.IMain$ReadEvalPrint.call(IMain.scala:773) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$Request.loadAndRun(IMain.scala:1020) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:627) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:626) [na:na] | |
| at scala.reflect.internal.util.ScalaClassLoader$class.asContext(ScalaClassLoader.scala:31) [na:na] | |
| at scala.reflect.internal.util.AbstractFileClassLoader.asContext(AbstractFileClassLoader.scala:19) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$WrappedRequest.loadAndRunReq(IMain.scala:626) [na:na] | |
| at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:558) [na:na] | |
| at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:554) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.reallyInterpret$1(ILoop.scala:804) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.interpretStartingWith(ILoop.scala:849) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.command(ILoop.scala:707) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.processLine(ILoop.scala:405) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.loop(ILoop.scala:431) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply$mcZ$sp(ILoop.scala:920) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply(ILoop.scala:906) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply(ILoop.scala:906) [na:na] | |
| at scala.reflect.internal.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:97) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.process(ILoop.scala:906) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.runTarget$1(MainGenericRunner.scala:74) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.run$1(MainGenericRunner.scala:87) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.process(MainGenericRunner.scala:98) [na:na] | |
| at scala.tools.nsc.MainGenericRunner$.main(MainGenericRunner.scala:103) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.main(MainGenericRunner.scala) [na:na] | |
| 17:46:22.712 [main] DEBUG c.t.t.d.k.k.OrderedKeyValueStoreAdapter - Used key length 0 for database txlog | |
| 17:46:22.743 [main] DEBUG c.t.t.d.b.BerkeleyJEStoreManager - Opened database systemlog | |
| java.lang.Throwable: null | |
| at com.thinkaurelius.titan.diskstorage.berkeleyje.BerkeleyJEStoreManager.openDatabase(BerkeleyJEStoreManager.java:169) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.berkeleyje.BerkeleyJEStoreManager.openDatabase(BerkeleyJEStoreManager.java:34) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.keycolumnvalue.keyvalue.OrderedKeyValueStoreManagerAdapter.openDatabase(OrderedKeyValueStoreManagerAdapter.java:69) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.keycolumnvalue.keyvalue.OrderedKeyValueStoreManagerAdapter.openDatabase(OrderedKeyValueStoreManagerAdapter.java:23) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.log.kcvs.KCVSLogManager.openLog(KCVSLogManager.java:192) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.Backend.initialize(Backend.java:262) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.graphdb.configuration.GraphDatabaseConfiguration.getBackend(GraphDatabaseConfiguration.java:1732) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.graphdb.database.StandardTitanGraph.<init>(StandardTitanGraph.java:105) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.core.TitanFactory.open(TitanFactory.java:91) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.core.TitanFactory.open(TitanFactory.java:71) [dist.jar:0.1.0-SNAPSHOT] | |
| at $line6.$read$$iw$$iw$.<init>(<console>:8) [scala-library.jar:na] | |
| at $line6.$read$$iw$$iw$.<clinit>(<console>) [scala-library.jar:na] | |
| at $line6.$eval$.$print$lzycompute(<console>:7) [scala-library.jar:na] | |
| at $line6.$eval$.$print(<console>:6) [scala-library.jar:na] | |
| at $line6.$eval.$print(<console>) [scala-library.jar:na] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_51] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_51] | |
| at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_51] | |
| at java.lang.reflect.Method.invoke(Method.java:497) ~[na:1.8.0_51] | |
| at scala.tools.nsc.interpreter.IMain$ReadEvalPrint.call(IMain.scala:773) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$Request.loadAndRun(IMain.scala:1020) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:627) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:626) [na:na] | |
| at scala.reflect.internal.util.ScalaClassLoader$class.asContext(ScalaClassLoader.scala:31) [na:na] | |
| at scala.reflect.internal.util.AbstractFileClassLoader.asContext(AbstractFileClassLoader.scala:19) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$WrappedRequest.loadAndRunReq(IMain.scala:626) [na:na] | |
| at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:558) [na:na] | |
| at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:554) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.reallyInterpret$1(ILoop.scala:804) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.interpretStartingWith(ILoop.scala:849) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.command(ILoop.scala:707) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.processLine(ILoop.scala:405) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.loop(ILoop.scala:431) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply$mcZ$sp(ILoop.scala:920) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply(ILoop.scala:906) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply(ILoop.scala:906) [na:na] | |
| at scala.reflect.internal.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:97) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.process(ILoop.scala:906) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.runTarget$1(MainGenericRunner.scala:74) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.run$1(MainGenericRunner.scala:87) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.process(MainGenericRunner.scala:98) [na:na] | |
| at scala.tools.nsc.MainGenericRunner$.main(MainGenericRunner.scala:103) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.main(MainGenericRunner.scala) [na:na] | |
| 17:46:22.744 [main] DEBUG c.t.t.d.k.k.OrderedKeyValueStoreAdapter - Used key length 0 for database systemlog | |
| 17:46:22.747 [main] DEBUG c.t.t.d.b.BerkeleyJEStoreManager - Opened database system_properties | |
| java.lang.Throwable: null | |
| at com.thinkaurelius.titan.diskstorage.berkeleyje.BerkeleyJEStoreManager.openDatabase(BerkeleyJEStoreManager.java:169) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.berkeleyje.BerkeleyJEStoreManager.openDatabase(BerkeleyJEStoreManager.java:34) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.keycolumnvalue.keyvalue.OrderedKeyValueStoreManagerAdapter.openDatabase(OrderedKeyValueStoreManagerAdapter.java:69) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.keycolumnvalue.keyvalue.OrderedKeyValueStoreManagerAdapter.openDatabase(OrderedKeyValueStoreManagerAdapter.java:23) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.diskstorage.Backend.initialize(Backend.java:267) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.graphdb.configuration.GraphDatabaseConfiguration.getBackend(GraphDatabaseConfiguration.java:1732) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.graphdb.database.StandardTitanGraph.<init>(StandardTitanGraph.java:105) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.core.TitanFactory.open(TitanFactory.java:91) [dist.jar:0.1.0-SNAPSHOT] | |
| at com.thinkaurelius.titan.core.TitanFactory.open(TitanFactory.java:71) [dist.jar:0.1.0-SNAPSHOT] | |
| at $line6.$read$$iw$$iw$.<init>(<console>:8) [scala-library.jar:na] | |
| at $line6.$read$$iw$$iw$.<clinit>(<console>) [scala-library.jar:na] | |
| at $line6.$eval$.$print$lzycompute(<console>:7) [scala-library.jar:na] | |
| at $line6.$eval$.$print(<console>:6) [scala-library.jar:na] | |
| at $line6.$eval.$print(<console>) [scala-library.jar:na] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:1.8.0_51] | |
| at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:1.8.0_51] | |
| at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:1.8.0_51] | |
| at java.lang.reflect.Method.invoke(Method.java:497) ~[na:1.8.0_51] | |
| at scala.tools.nsc.interpreter.IMain$ReadEvalPrint.call(IMain.scala:773) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$Request.loadAndRun(IMain.scala:1020) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:627) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$WrappedRequest$$anonfun$loadAndRunReq$1.apply(IMain.scala:626) [na:na] | |
| at scala.reflect.internal.util.ScalaClassLoader$class.asContext(ScalaClassLoader.scala:31) [na:na] | |
| at scala.reflect.internal.util.AbstractFileClassLoader.asContext(AbstractFileClassLoader.scala:19) [na:na] | |
| at scala.tools.nsc.interpreter.IMain$WrappedRequest.loadAndRunReq(IMain.scala:626) [na:na] | |
| at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:558) [na:na] | |
| at scala.tools.nsc.interpreter.IMain.interpret(IMain.scala:554) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.reallyInterpret$1(ILoop.scala:804) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.interpretStartingWith(ILoop.scala:849) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.command(ILoop.scala:707) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.processLine(ILoop.scala:405) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.loop(ILoop.scala:431) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply$mcZ$sp(ILoop.scala:920) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply(ILoop.scala:906) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop$$anonfun$process$1.apply(ILoop.scala:906) [na:na] | |
| at scala.reflect.internal.util.ScalaClassLoader$.savingContextLoader(ScalaClassLoader.scala:97) [na:na] | |
| at scala.tools.nsc.interpreter.ILoop.process(ILoop.scala:906) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.runTarget$1(MainGenericRunner.scala:74) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.run$1(MainGenericRunner.scala:87) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.process(MainGenericRunner.scala:98) [na:na] | |
| at scala.tools.nsc.MainGenericRunner$.main(MainGenericRunner.scala:103) [na:na] | |
| at scala.tools.nsc.MainGenericRunner.main(MainGenericRunner.scala) [na:na] | |
| 17:46:22.749 [main] DEBUG c.t.t.d.k.k.OrderedKeyValueStoreAdapter - Used key length 0 for database system_properties | |
| 17:46:22.794 [main] DEBUG c.t.t.g.d.i.VertexIDAssigner - Partition IDs? [false], Local Partitions? [false] | |
| 17:46:22.949 [main] INFO c.t.t.diskstorage.log.kcvs.KCVSLog - Loaded unidentified ReadMarker start time Timepoint[1442079982949000 ?s] into com.thinkaurelius.titan.diskstorage.log.kcvs.KCVSLog$MessagePuller@485a3466 | |
| 17:46:22.952 [main] DEBUG c.t.t.diskstorage.log.kcvs.KCVSLog - Creating log read executor: initialDelay=100000 delay=5000000 unit=MICROSECONDS | |
| 17:46:23.031 [main] DEBUG c.t.t.g.t.v.GuavaVertexCache - Created dirty vertex map with initial size 32 | |
| 17:46:23.032 [main] DEBUG c.t.t.g.t.v.GuavaVertexCache - Created vertex cache with max size 20000 | |
| 17:46:23.062 [pool-3-thread-1] DEBUG c.t.t.diskstorage.log.kcvs.KCVSLog - MessagePuller configured with ReadMarker timestamp slightly ahead of read lag time; waiting for the clock to catch up | |
| graph: com.bio4j.titan.model.ncbiTaxonomy.TitanNCBITaxonomyGraph = com.bio4j.titan.model.ncbiTaxonomy.TitanNCBITaxonomyGraph@71c5b236 | |
| scala> |
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