Created
April 26, 2017 20:11
-
-
Save lawsofthought/3397727279401c3e4b64cd79552e24c6 to your computer and use it in GitHub Desktop.
A R script to illustrate how to make box, bean, pirate, etc, plots
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
# Some R code to demo boxplots, beanplots, pirateplots, etc | |
library(psych) | |
library(dplyr) | |
library(tidyr) | |
library(beanplot) | |
library(yarrr) | |
# Load the cushny data | |
data(cushny) | |
# Plot it using error.bars. Following example in psych package manual | |
error.bars(cushny[1:4], | |
within=TRUE, | |
ylab="Hours of sleep", | |
xlab="Drug condition", | |
main="95% confidence of within subject effects") | |
# Reformat the data into a "long" and "tidy" format | |
Df <- select(cushny, Control, drug1, drug2L, drug2R) %>% | |
mutate(subject = factor(seq(length(Control)))) %>% | |
select(subject, everything()) %>% | |
gather(drug, sleep, Control:drug2R) %>% | |
arrange(subject) | |
# A box plot | |
boxplot(sleep ~ drug, | |
data=Df, | |
ylab='Hours of sleep', | |
xlab='Drug') | |
# Beanplot | |
beanplot(sleep ~ drug, | |
data=Df, | |
ylab='Hours of sleep', | |
xlab='Drug', | |
col='lightgray', | |
overallline = 'median') | |
# Pirateplot | |
pirateplot(formula = sleep ~ drug, | |
data = Df, | |
theme = 3, | |
point.o = 1, | |
ylab='Hours of sleep', | |
xlab='Drug') |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment