AlphaPept_PXD003881.log

2023-03-30 11:09:30> Logging to C:\Users\mlazear\.alphapept\finished\2023_03_30_12.log.
2023-03-30 11:09:30> Code location C:\Program Files (x86)\AlphaPept\alphapept
2023-03-30 11:09:30> Python location C:\Program Files (x86)\AlphaPept\alphapept.exe
2023-03-30 11:09:30> Platform information:
2023-03-30 11:09:30> system     - Windows
2023-03-30 11:09:30> release    - 10
2023-03-30 11:09:30> version    - 10.0.22621
2023-03-30 11:09:30> machine    - AMD64
2023-03-30 11:09:30> processor  - Intel64 Family 6 Model 151 Stepping 2, GenuineIntel
2023-03-30 11:09:30> cpu count  - 20
2023-03-30 11:09:30> ram memory - 9.8/31.9 Gb (available/total)
2023-03-30 11:09:30> processor  - Intel64 Family 6 Model 151 Stepping 2, GenuineIntel
2023-03-30 11:09:30> Python information:
2023-03-30 11:09:30> SQLAlchemy                   - 1.4.39
2023-03-30 11:09:30> alphapept                    - 0.4.9
2023-03-30 11:09:30> biopython                    - 
2023-03-30 11:09:30> bumpversion                  - 
2023-03-30 11:09:30> click                        - 8.1.3
2023-03-30 11:09:30> fastcore                     - 1.5.26
2023-03-30 11:09:30> h5py                         - 3.7.0
2023-03-30 11:09:30> jupyter                      - 
2023-03-30 11:09:30> jupyter-contrib-nbextensions - 
2023-03-30 11:09:30> matplotlib                   - 3.6.1
2023-03-30 11:09:30> nbdev                        - 
2023-03-30 11:09:30> networkx                     - 2.8.6
2023-03-30 11:09:30> numba                        - 0.55.2
2023-03-30 11:09:30> numpy                        - 1.20.3
2023-03-30 11:09:30> pandas                       - 1.4.3
2023-03-30 11:09:30> plotly-express               - 
2023-03-30 11:09:30> psutil                       - 5.9.1
2023-03-30 11:09:30> pyinstaller                  - 4.10
2023-03-30 11:09:30> pyteomics                    - 4.5.5
2023-03-30 11:09:30> python                       - 3.8.15
2023-03-30 11:09:30> pythonnet                    - 
2023-03-30 11:09:30> pywin32                      - 
2023-03-30 11:09:30> pyyaml                       - 
2023-03-30 11:09:30> scikit-learn                 - 
2023-03-30 11:09:30> scipy                        - 1.8.1
2023-03-30 11:09:30> streamlit                    - 1.16.0
2023-03-30 11:09:30> streamlit-aggrid             - 
2023-03-30 11:09:30> tables                       - 3.6.1
2023-03-30 11:09:30> tqdm                         - 4.64.0
2023-03-30 11:09:30> twine                        - 
2023-03-30 11:09:30> watchdog                     - 2.1.9
2023-03-30 11:09:30> wget                         - 3.2
2023-03-30 11:09:30> 
2023-03-30 11:09:30> Check for settings not completely implemented yet.
2023-03-30 11:09:30> Size check:
2023-03-30 11:09:30> Size of job (raw files) 22.96 Gb
2023-03-30 11:09:30> Required disk space for D: - 22.96 Gb, Available 1441.80 Gb OK.
2023-03-30 11:09:30> 
2023-03-30 11:09:30> Workflow Settings:
2023-03-30 11:09:30> align              - True
2023-03-30 11:09:30> continue_runs      - False
2023-03-30 11:09:30> create_database    - True
2023-03-30 11:09:30> find_features      - True
2023-03-30 11:09:30> import_raw_data    - True
2023-03-30 11:09:30> lfq_quantification - True
2023-03-30 11:09:30> match              - True
2023-03-30 11:09:30> recalibrate_data   - True
2023-03-30 11:09:30> search_data        - True
2023-03-30 11:09:30> 
2023-03-30 11:09:30> Checking if files exist.
2023-03-30 11:09:30> FASTA Files have a total size of 15.027 Mb
2023-03-30 11:09:30> Results path was not set. Setting to D:\PXD003881\results.hdf
2023-03-30 11:09:30> No database path set and save_db option checked. Using default path D:\PXD003881\database.hdf
2023-03-30 11:09:30> You are are using the frozen one-click installation.
2023-03-30 11:09:30> Workflow has 13 steps
2023-03-30 11:09:30> Setting callback to logger.
2023-03-30 11:09:30> ==== create_database ====
2023-03-30 11:09:30> __current_task create_database
2023-03-30 11:09:30> __progress_current 0.000
2023-03-30 11:09:30> __progress_overall 0.000
2023-03-30 11:09:30> Database path D:\PXD003881\database.hdf is not a file.
2023-03-30 11:09:30> Found FASTA file D:\PXD003881\PXD003881.fasta with size 15.03 Mb.
2023-03-30 11:09:30> Creating a new database from FASTA.
2023-03-30 11:09:30> FASTA contains 25,360 entries.
2023-03-30 11:10:37> Logging to C:\Users\mlazear\.alphapept\finished\2023_03_30_12.log.
2023-03-30 11:10:37> Code location C:\Program Files (x86)\AlphaPept\alphapept
2023-03-30 11:10:37> Python location C:\Program Files (x86)\AlphaPept\alphapept.exe
2023-03-30 11:10:37> Platform information:
2023-03-30 11:10:37> system     - Windows
2023-03-30 11:10:37> release    - 10
2023-03-30 11:10:37> version    - 10.0.22621
2023-03-30 11:10:37> machine    - AMD64
2023-03-30 11:10:37> processor  - Intel64 Family 6 Model 151 Stepping 2, GenuineIntel
2023-03-30 11:10:37> cpu count  - 20
2023-03-30 11:10:37> ram memory - 16.1/31.9 Gb (available/total)
2023-03-30 11:10:37> processor  - Intel64 Family 6 Model 151 Stepping 2, GenuineIntel
2023-03-30 11:10:37> Python information:
2023-03-30 11:10:37> SQLAlchemy                   - 1.4.39
2023-03-30 11:10:37> alphapept                    - 0.4.9
2023-03-30 11:10:37> biopython                    - 
2023-03-30 11:10:37> bumpversion                  - 
2023-03-30 11:10:37> click                        - 8.1.3
2023-03-30 11:10:37> fastcore                     - 1.5.26
2023-03-30 11:10:37> h5py                         - 3.7.0
2023-03-30 11:10:37> jupyter                      - 
2023-03-30 11:10:37> jupyter-contrib-nbextensions - 
2023-03-30 11:10:37> matplotlib                   - 3.6.1
2023-03-30 11:10:37> nbdev                        - 
2023-03-30 11:10:37> networkx                     - 2.8.6
2023-03-30 11:10:37> numba                        - 0.55.2
2023-03-30 11:10:37> numpy                        - 1.20.3
2023-03-30 11:10:37> pandas                       - 1.4.3
2023-03-30 11:10:37> plotly-express               - 
2023-03-30 11:10:37> psutil                       - 5.9.1
2023-03-30 11:10:37> pyinstaller                  - 4.10
2023-03-30 11:10:37> pyteomics                    - 4.5.5
2023-03-30 11:10:37> python                       - 3.8.15
2023-03-30 11:10:37> pythonnet                    - 
2023-03-30 11:10:37> pywin32                      - 
2023-03-30 11:10:37> pyyaml                       - 
2023-03-30 11:10:37> scikit-learn                 - 
2023-03-30 11:10:37> scipy                        - 1.8.1
2023-03-30 11:10:37> streamlit                    - 1.16.0
2023-03-30 11:10:37> streamlit-aggrid             - 
2023-03-30 11:10:37> tables                       - 3.6.1
2023-03-30 11:10:37> tqdm                         - 4.64.0
2023-03-30 11:10:37> twine                        - 
2023-03-30 11:10:37> watchdog                     - 2.1.9
2023-03-30 11:10:37> wget                         - 3.2
2023-03-30 11:10:37> 
2023-03-30 11:10:37> Check for settings not completely implemented yet.
2023-03-30 11:10:37> Size check:
2023-03-30 11:10:37> Size of job (raw files) 22.96 Gb
2023-03-30 11:10:37> Required disk space for D: - 22.96 Gb, Available 1441.80 Gb OK.
2023-03-30 11:10:37> 
2023-03-30 11:10:37> Workflow Settings:
2023-03-30 11:10:37> align              - True
2023-03-30 11:10:37> continue_runs      - False
2023-03-30 11:10:37> create_database    - True
2023-03-30 11:10:37> find_features      - True
2023-03-30 11:10:37> import_raw_data    - True
2023-03-30 11:10:37> lfq_quantification - True
2023-03-30 11:10:37> match              - True
2023-03-30 11:10:37> recalibrate_data   - True
2023-03-30 11:10:37> search_data        - True
2023-03-30 11:10:37> 
2023-03-30 11:10:37> Checking if files exist.
2023-03-30 11:10:37> FASTA Files have a total size of 15.027 Mb
2023-03-30 11:10:37> Results path was not set. Setting to D:\PXD003881\results.hdf
2023-03-30 11:10:37> No database path set and save_db option checked. Using default path D:\PXD003881\database.hdf
2023-03-30 11:10:37> You are are using the frozen one-click installation.
2023-03-30 11:10:37> Workflow has 13 steps
2023-03-30 11:10:37> Setting callback to logger.
2023-03-30 11:10:37> ==== create_database ====
2023-03-30 11:10:37> __current_task create_database
2023-03-30 11:10:37> __progress_current 0.000
2023-03-30 11:10:37> __progress_overall 0.000
2023-03-30 11:10:37> Database path D:\PXD003881\database.hdf is not a file.
2023-03-30 11:10:37> Found FASTA file D:\PXD003881\PXD003881.fasta with size 15.03 Mb.
2023-03-30 11:10:37> Creating a new database from FASTA.
2023-03-30 11:10:38> FASTA contains 25,360 entries.
2023-03-30 11:11:30> __progress_current 0.038
2023-03-30 11:11:30> __progress_overall 0.003
2023-03-30 11:11:31> __progress_current 0.077
2023-03-30 11:11:31> __progress_overall 0.006
2023-03-30 11:11:31> __progress_current 0.115
2023-03-30 11:11:31> __progress_overall 0.009
2023-03-30 11:11:32> __progress_current 0.154
2023-03-30 11:11:32> __progress_overall 0.012
2023-03-30 11:11:42> __progress_current 0.192
2023-03-30 11:11:42> __progress_overall 0.015
2023-03-30 11:11:46> __progress_current 0.231
2023-03-30 11:11:46> __progress_overall 0.018
2023-03-30 11:11:47> __progress_current 0.269
2023-03-30 11:11:47> __progress_overall 0.021
2023-03-30 11:11:48> __progress_current 0.308
2023-03-30 11:11:48> __progress_overall 0.024
2023-03-30 11:11:49> __progress_current 0.346
2023-03-30 11:11:49> __progress_overall 0.027
2023-03-30 11:11:50> __progress_current 0.385
2023-03-30 11:11:50> __progress_overall 0.030
2023-03-30 11:11:51> __progress_current 0.423
2023-03-30 11:11:51> __progress_overall 0.033
2023-03-30 11:11:52> __progress_current 0.462
2023-03-30 11:11:52> __progress_overall 0.036
2023-03-30 11:11:53> __progress_current 0.500
2023-03-30 11:11:53> __progress_overall 0.038
2023-03-30 11:11:54> __progress_current 0.538
2023-03-30 11:11:54> __progress_overall 0.041
2023-03-30 11:11:54> __progress_current 0.577
2023-03-30 11:11:54> __progress_overall 0.044
2023-03-30 11:11:55> __progress_current 0.615
2023-03-30 11:11:55> __progress_overall 0.047
2023-03-30 11:11:56> __progress_current 0.654
2023-03-30 11:11:56> __progress_overall 0.050
2023-03-30 11:11:57> __progress_current 0.692
2023-03-30 11:11:57> __progress_overall 0.053
2023-03-30 11:11:58> __progress_current 0.731
2023-03-30 11:11:58> __progress_overall 0.056
2023-03-30 11:11:58> __progress_current 0.769
2023-03-30 11:11:58> __progress_overall 0.059
2023-03-30 11:11:59> __progress_current 0.808
2023-03-30 11:11:59> __progress_overall 0.062
2023-03-30 11:12:02> __progress_current 0.846
2023-03-30 11:12:02> __progress_overall 0.065
2023-03-30 11:12:03> __progress_current 0.885
2023-03-30 11:12:03> __progress_overall 0.068
2023-03-30 11:12:04> __progress_current 0.923
2023-03-30 11:12:04> __progress_overall 0.071
2023-03-30 11:12:05> __progress_current 0.962
2023-03-30 11:12:05> __progress_overall 0.074
2023-03-30 11:12:07> __progress_current 1.000
2023-03-30 11:12:07> __progress_overall 0.077
2023-03-30 11:12:14> Digested 25,360 proteins and generated 5,676,972 spectra
2023-03-30 11:12:52> Database saved to D:\PXD003881\database.hdf. Filesize of database is 2.18 GB
2023-03-30 11:12:58> __progress_current 1.000
2023-03-30 11:12:58> __progress_overall 0.077
2023-03-30 11:12:58> ==== import_raw_data ====
2023-03-30 11:12:58> __current_task import_raw_data
2023-03-30 11:12:58> __progress_current 0.000
2023-03-30 11:12:58> __progress_overall 0.077
2023-03-30 11:12:58> Processing 20 files for step raw_conversion
2023-03-30 11:12:58> AlphaPool was set to 20 processes. Setting max to 20.
2023-03-30 11:13:06> Processing of D:\PXD003881\B03_02_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion failed. Exception No module named 'lxml'
2023-03-30 11:13:06> __progress_current 0.050
2023-03-30 11:13:06> __progress_overall 0.081
2023-03-30 11:13:06> Processing of D:\PXD003881\B03_03_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion failed. Exception No module named 'lxml'
2023-03-30 11:13:06> __progress_current 0.100
2023-03-30 11:13:06> __progress_overall 0.085
2023-03-30 11:13:07> Processing of D:\PXD003881\B03_04_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion failed. Exception No module named 'lxml'
2023-03-30 11:13:07> __progress_current 0.150
2023-03-30 11:13:07> __progress_overall 0.088
2023-03-30 11:13:07> Processing of D:\PXD003881\B03_05_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion failed. Exception No module named 'lxml'
2023-03-30 11:13:07> __progress_current 0.200
2023-03-30 11:13:07> __progress_overall 0.092
2023-03-30 11:13:07> Processing of D:\PXD003881\B03_06_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion failed. Exception No module named 'lxml'
2023-03-30 11:13:07> __progress_current 0.250
2023-03-30 11:13:07> __progress_overall 0.096
2023-03-30 11:13:07> Processing of D:\PXD003881\B03_07_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion failed. Exception No module named 'lxml'
2023-03-30 11:13:07> __progress_current 0.300
2023-03-30 11:13:07> __progress_overall 0.100
2023-03-30 11:13:07> Processing of D:\PXD003881\B03_08_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion failed. Exception No module named 'lxml'
2023-03-30 11:13:07> __progress_current 0.350
2023-03-30 11:13:07> __progress_overall 0.104
2023-03-30 11:13:07> Processing of D:\PXD003881\B03_09_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion failed. Exception No module named 'lxml'
2023-03-30 11:13:07> __progress_current 0.400
2023-03-30 11:13:07> __progress_overall 0.108
2023-03-30 11:13:07> Processing of D:\PXD003881\B03_10_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion failed. Exception No module named 'lxml'
2023-03-30 11:13:07> __progress_current 0.450
2023-03-30 11:13:07> __progress_overall 0.112
2023-03-30 11:13:07> Processing of D:\PXD003881\B03_11_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion failed. Exception No module named 'lxml'
2023-03-30 11:13:07> __progress_current 0.500
2023-03-30 11:13:07> __progress_overall 0.115
2023-03-30 11:13:07> Processing of D:\PXD003881\B03_12_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion failed. Exception No module named 'lxml'
2023-03-30 11:13:07> __progress_current 0.550
2023-03-30 11:13:07> __progress_overall 0.119
2023-03-30 11:13:07> Processing of D:\PXD003881\B03_13_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion failed. Exception No module named 'lxml'
2023-03-30 11:13:07> __progress_current 0.600
2023-03-30 11:13:07> __progress_overall 0.123
2023-03-30 11:13:07> Processing of D:\PXD003881\B03_14_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion failed. Exception No module named 'lxml'
2023-03-30 11:13:07> __progress_current 0.650
2023-03-30 11:13:07> __progress_overall 0.127
2023-03-30 11:13:07> Processing of D:\PXD003881\B03_15_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion failed. Exception No module named 'lxml'
2023-03-30 11:13:07> __progress_current 0.700
2023-03-30 11:13:07> __progress_overall 0.131
2023-03-30 11:13:07> Processing of D:\PXD003881\B03_16_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion failed. Exception No module named 'lxml'
2023-03-30 11:13:07> __progress_current 0.750
2023-03-30 11:13:07> __progress_overall 0.135
2023-03-30 11:13:07> Processing of D:\PXD003881\B03_17_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion failed. Exception No module named 'lxml'
2023-03-30 11:13:07> __progress_current 0.800
2023-03-30 11:13:07> __progress_overall 0.138
2023-03-30 11:13:07> Processing of D:\PXD003881\B03_18_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion failed. Exception No module named 'lxml'
2023-03-30 11:13:07> __progress_current 0.850
2023-03-30 11:13:07> __progress_overall 0.142
2023-03-30 11:13:07> Processing of D:\PXD003881\B03_19_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion failed. Exception No module named 'lxml'
2023-03-30 11:13:07> __progress_current 0.900
2023-03-30 11:13:07> __progress_overall 0.146
2023-03-30 11:13:07> Processing of D:\PXD003881\B03_20_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion failed. Exception No module named 'lxml'
2023-03-30 11:13:07> __progress_current 0.950
2023-03-30 11:13:07> __progress_overall 0.150
2023-03-30 11:13:07> Processing of D:\PXD003881\B03_21_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion failed. Exception No module named 'lxml'
2023-03-30 11:13:07> __progress_current 1.000
2023-03-30 11:13:07> __progress_overall 0.154
2023-03-30 11:13:07> Attempting to rerun failed runs with 10 processes
2023-03-30 11:13:07> AlphaPool was set to 10 processes. Setting max to 10.
2023-03-30 11:13:12> Processing of D:\PXD003881\B03_02_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion succeeded. 5.00 %
2023-03-30 11:13:12> __progress_current 0.050
2023-03-30 11:13:12> __progress_overall 0.081
2023-03-30 11:13:12> Processing of D:\PXD003881\B03_03_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion succeeded. 10.00 %
2023-03-30 11:13:12> __progress_current 0.100
2023-03-30 11:13:12> __progress_overall 0.085
2023-03-30 11:13:12> Processing of D:\PXD003881\B03_04_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion succeeded. 15.00 %
2023-03-30 11:13:12> __progress_current 0.150
2023-03-30 11:13:12> __progress_overall 0.088
2023-03-30 11:13:12> Processing of D:\PXD003881\B03_05_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion succeeded. 20.00 %
2023-03-30 11:13:12> __progress_current 0.200
2023-03-30 11:13:12> __progress_overall 0.092
2023-03-30 11:13:12> Processing of D:\PXD003881\B03_06_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion succeeded. 25.00 %
2023-03-30 11:13:12> __progress_current 0.250
2023-03-30 11:13:12> __progress_overall 0.096
2023-03-30 11:13:12> Processing of D:\PXD003881\B03_07_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion succeeded. 30.00 %
2023-03-30 11:13:12> __progress_current 0.300
2023-03-30 11:13:12> __progress_overall 0.100
2023-03-30 11:13:12> Processing of D:\PXD003881\B03_08_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion succeeded. 35.00 %
2023-03-30 11:13:12> __progress_current 0.350
2023-03-30 11:13:12> __progress_overall 0.104
2023-03-30 11:13:12> Processing of D:\PXD003881\B03_09_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion succeeded. 40.00 %
2023-03-30 11:13:12> __progress_current 0.400
2023-03-30 11:13:12> __progress_overall 0.108
2023-03-30 11:13:12> Processing of D:\PXD003881\B03_10_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion succeeded. 45.00 %
2023-03-30 11:13:12> __progress_current 0.450
2023-03-30 11:13:12> __progress_overall 0.112
2023-03-30 11:13:12> Processing of D:\PXD003881\B03_11_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion succeeded. 50.00 %
2023-03-30 11:13:12> __progress_current 0.500
2023-03-30 11:13:12> __progress_overall 0.115
2023-03-30 11:13:12> Processing of D:\PXD003881\B03_12_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion succeeded. 55.00 %
2023-03-30 11:13:12> __progress_current 0.550
2023-03-30 11:13:12> __progress_overall 0.119
2023-03-30 11:13:12> Processing of D:\PXD003881\B03_13_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion succeeded. 60.00 %
2023-03-30 11:13:12> __progress_current 0.600
2023-03-30 11:13:12> __progress_overall 0.123
2023-03-30 11:13:12> Processing of D:\PXD003881\B03_14_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion succeeded. 65.00 %
2023-03-30 11:13:12> __progress_current 0.650
2023-03-30 11:13:12> __progress_overall 0.127
2023-03-30 11:13:12> Processing of D:\PXD003881\B03_15_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion succeeded. 70.00 %
2023-03-30 11:13:12> __progress_current 0.700
2023-03-30 11:13:12> __progress_overall 0.131
2023-03-30 11:13:12> Processing of D:\PXD003881\B03_16_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion succeeded. 75.00 %
2023-03-30 11:13:12> __progress_current 0.750
2023-03-30 11:13:12> __progress_overall 0.135
2023-03-30 11:13:12> Processing of D:\PXD003881\B03_17_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion succeeded. 80.00 %
2023-03-30 11:13:12> __progress_current 0.800
2023-03-30 11:13:12> __progress_overall 0.138
2023-03-30 11:13:12> Processing of D:\PXD003881\B03_18_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion succeeded. 85.00 %
2023-03-30 11:13:12> __progress_current 0.850
2023-03-30 11:13:12> __progress_overall 0.142
2023-03-30 11:13:12> Processing of D:\PXD003881\B03_19_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion succeeded. 90.00 %
2023-03-30 11:13:12> __progress_current 0.900
2023-03-30 11:13:12> __progress_overall 0.146
2023-03-30 11:13:12> Processing of D:\PXD003881\B03_20_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion succeeded. 95.00 %
2023-03-30 11:13:12> __progress_current 0.950
2023-03-30 11:13:12> __progress_overall 0.150
2023-03-30 11:13:12> Processing of D:\PXD003881\B03_21_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step raw_conversion succeeded. 100.00 %
2023-03-30 11:13:12> __progress_current 1.000
2023-03-30 11:13:12> __progress_overall 0.154
2023-03-30 11:13:12> __progress_current 1.000
2023-03-30 11:13:12> __progress_overall 0.154
2023-03-30 11:13:12> ==== feature_finding ====
2023-03-30 11:13:12> __current_task feature_finding
2023-03-30 11:13:12> __progress_current 0.000
2023-03-30 11:13:12> __progress_overall 0.154
2023-03-30 11:13:13> Processing 20 files for step find_features
2023-03-30 11:13:13> Setting Process limit to 2
2023-03-30 11:13:13> AlphaPool was set to 2 processes. Setting max to 2.
2023-03-30 11:13:22> Processing of D:\PXD003881\B03_02_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_02_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:22> __progress_current 0.050
2023-03-30 11:13:22> __progress_overall 0.158
2023-03-30 11:13:22> Processing of D:\PXD003881\B03_03_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_03_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:22> __progress_current 0.100
2023-03-30 11:13:22> __progress_overall 0.162
2023-03-30 11:13:22> Processing of D:\PXD003881\B03_04_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_04_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:22> __progress_current 0.150
2023-03-30 11:13:22> __progress_overall 0.165
2023-03-30 11:13:22> Processing of D:\PXD003881\B03_05_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_05_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:22> __progress_current 0.200
2023-03-30 11:13:22> __progress_overall 0.169
2023-03-30 11:13:22> Processing of D:\PXD003881\B03_06_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_06_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:22> __progress_current 0.250
2023-03-30 11:13:22> __progress_overall 0.173
2023-03-30 11:13:22> Processing of D:\PXD003881\B03_07_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_07_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:22> __progress_current 0.300
2023-03-30 11:13:22> __progress_overall 0.177
2023-03-30 11:13:22> Processing of D:\PXD003881\B03_08_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_08_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:22> __progress_current 0.350
2023-03-30 11:13:22> __progress_overall 0.181
2023-03-30 11:13:22> Processing of D:\PXD003881\B03_09_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_09_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:22> __progress_current 0.400
2023-03-30 11:13:22> __progress_overall 0.185
2023-03-30 11:13:22> Processing of D:\PXD003881\B03_10_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_10_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:22> __progress_current 0.450
2023-03-30 11:13:22> __progress_overall 0.188
2023-03-30 11:13:22> Processing of D:\PXD003881\B03_11_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_11_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:22> __progress_current 0.500
2023-03-30 11:13:22> __progress_overall 0.192
2023-03-30 11:13:22> Processing of D:\PXD003881\B03_12_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_12_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:22> __progress_current 0.550
2023-03-30 11:13:22> __progress_overall 0.196
2023-03-30 11:13:22> Processing of D:\PXD003881\B03_13_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_13_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:22> __progress_current 0.600
2023-03-30 11:13:22> __progress_overall 0.200
2023-03-30 11:13:22> Processing of D:\PXD003881\B03_14_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_14_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:22> __progress_current 0.650
2023-03-30 11:13:22> __progress_overall 0.204
2023-03-30 11:13:22> Processing of D:\PXD003881\B03_15_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_15_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:22> __progress_current 0.700
2023-03-30 11:13:22> __progress_overall 0.208
2023-03-30 11:13:22> Processing of D:\PXD003881\B03_16_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_16_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:22> __progress_current 0.750
2023-03-30 11:13:22> __progress_overall 0.212
2023-03-30 11:13:22> Processing of D:\PXD003881\B03_17_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_17_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:22> __progress_current 0.800
2023-03-30 11:13:22> __progress_overall 0.215
2023-03-30 11:13:22> Processing of D:\PXD003881\B03_18_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_18_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:22> __progress_current 0.850
2023-03-30 11:13:22> __progress_overall 0.219
2023-03-30 11:13:22> Processing of D:\PXD003881\B03_19_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_19_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:22> __progress_current 0.900
2023-03-30 11:13:22> __progress_overall 0.223
2023-03-30 11:13:22> Processing of D:\PXD003881\B03_20_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_20_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:22> __progress_current 0.950
2023-03-30 11:13:22> __progress_overall 0.227
2023-03-30 11:13:22> Processing of D:\PXD003881\B03_21_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_21_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:22> __progress_current 1.000
2023-03-30 11:13:22> __progress_overall 0.231
2023-03-30 11:13:22> Attempting to rerun failed runs with 1 processes
2023-03-30 11:13:22> AlphaPool was set to 1 processes. Setting max to 1.
2023-03-30 11:13:26> Processing of D:\PXD003881\B03_02_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_02_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:26> __progress_current 0.050
2023-03-30 11:13:26> __progress_overall 0.158
2023-03-30 11:13:26> Processing of D:\PXD003881\B03_03_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_03_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:26> __progress_current 0.100
2023-03-30 11:13:26> __progress_overall 0.162
2023-03-30 11:13:26> Processing of D:\PXD003881\B03_04_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_04_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:26> __progress_current 0.150
2023-03-30 11:13:26> __progress_overall 0.165
2023-03-30 11:13:26> Processing of D:\PXD003881\B03_05_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_05_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:26> __progress_current 0.200
2023-03-30 11:13:26> __progress_overall 0.169
2023-03-30 11:13:26> Processing of D:\PXD003881\B03_06_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_06_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:26> __progress_current 0.250
2023-03-30 11:13:26> __progress_overall 0.173
2023-03-30 11:13:26> Processing of D:\PXD003881\B03_07_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_07_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:26> __progress_current 0.300
2023-03-30 11:13:26> __progress_overall 0.177
2023-03-30 11:13:26> Processing of D:\PXD003881\B03_08_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_08_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:26> __progress_current 0.350
2023-03-30 11:13:26> __progress_overall 0.181
2023-03-30 11:13:26> Processing of D:\PXD003881\B03_09_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_09_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:26> __progress_current 0.400
2023-03-30 11:13:26> __progress_overall 0.185
2023-03-30 11:13:26> Processing of D:\PXD003881\B03_10_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_10_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:26> __progress_current 0.450
2023-03-30 11:13:26> __progress_overall 0.188
2023-03-30 11:13:26> Processing of D:\PXD003881\B03_11_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_11_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:26> __progress_current 0.500
2023-03-30 11:13:26> __progress_overall 0.192
2023-03-30 11:13:26> Processing of D:\PXD003881\B03_12_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_12_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:26> __progress_current 0.550
2023-03-30 11:13:26> __progress_overall 0.196
2023-03-30 11:13:26> Processing of D:\PXD003881\B03_13_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_13_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:26> __progress_current 0.600
2023-03-30 11:13:26> __progress_overall 0.200
2023-03-30 11:13:26> Processing of D:\PXD003881\B03_14_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_14_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:26> __progress_current 0.650
2023-03-30 11:13:26> __progress_overall 0.204
2023-03-30 11:13:26> Processing of D:\PXD003881\B03_15_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_15_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:26> __progress_current 0.700
2023-03-30 11:13:26> __progress_overall 0.208
2023-03-30 11:13:26> Processing of D:\PXD003881\B03_16_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_16_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:26> __progress_current 0.750
2023-03-30 11:13:26> __progress_overall 0.212
2023-03-30 11:13:26> Processing of D:\PXD003881\B03_17_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_17_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:26> __progress_current 0.800
2023-03-30 11:13:26> __progress_overall 0.215
2023-03-30 11:13:26> Processing of D:\PXD003881\B03_18_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_18_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:26> __progress_current 0.850
2023-03-30 11:13:26> __progress_overall 0.219
2023-03-30 11:13:26> Processing of D:\PXD003881\B03_19_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_19_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:26> __progress_current 0.900
2023-03-30 11:13:26> __progress_overall 0.223
2023-03-30 11:13:26> Processing of D:\PXD003881\B03_20_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_20_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:26> __progress_current 0.950
2023-03-30 11:13:26> __progress_overall 0.227
2023-03-30 11:13:26> Processing of D:\PXD003881\B03_21_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step find_features failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_21_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:26> __progress_current 1.000
2023-03-30 11:13:26> __progress_overall 0.231
2023-03-30 11:13:26> __progress_current 1.000
2023-03-30 11:13:26> __progress_overall 0.231
2023-03-30 11:13:26> ==== search_data ====
2023-03-30 11:13:26> __current_task search_data
2023-03-30 11:13:26> __progress_current 0.000
2023-03-30 11:13:26> __progress_overall 0.231
2023-03-30 11:13:26> Starting first search.
2023-03-30 11:13:26> Processing 20 files for step search_db
2023-03-30 11:13:26> Searching. Setting Process limit to 2.
2023-03-30 11:13:26> AlphaPool was set to 2 processes. Setting max to 2.
2023-03-30 11:13:31> Processing of D:\PXD003881\B03_02_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_02_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:31> __progress_current 0.050
2023-03-30 11:13:31> __progress_overall 0.235
2023-03-30 11:13:31> Processing of D:\PXD003881\B03_03_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_03_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:31> __progress_current 0.100
2023-03-30 11:13:31> __progress_overall 0.238
2023-03-30 11:13:31> Processing of D:\PXD003881\B03_04_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_04_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:31> __progress_current 0.150
2023-03-30 11:13:31> __progress_overall 0.242
2023-03-30 11:13:31> Processing of D:\PXD003881\B03_05_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_05_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:31> __progress_current 0.200
2023-03-30 11:13:31> __progress_overall 0.246
2023-03-30 11:13:31> Processing of D:\PXD003881\B03_06_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_06_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:31> __progress_current 0.250
2023-03-30 11:13:31> __progress_overall 0.250
2023-03-30 11:13:31> Processing of D:\PXD003881\B03_07_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_07_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:31> __progress_current 0.300
2023-03-30 11:13:31> __progress_overall 0.254
2023-03-30 11:13:31> Processing of D:\PXD003881\B03_08_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_08_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:31> __progress_current 0.350
2023-03-30 11:13:31> __progress_overall 0.258
2023-03-30 11:13:31> Processing of D:\PXD003881\B03_09_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_09_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:31> __progress_current 0.400
2023-03-30 11:13:31> __progress_overall 0.262
2023-03-30 11:13:31> Processing of D:\PXD003881\B03_10_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_10_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:31> __progress_current 0.450
2023-03-30 11:13:31> __progress_overall 0.265
2023-03-30 11:13:31> Processing of D:\PXD003881\B03_11_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_11_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:31> __progress_current 0.500
2023-03-30 11:13:31> __progress_overall 0.269
2023-03-30 11:13:31> Processing of D:\PXD003881\B03_12_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_12_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:31> __progress_current 0.550
2023-03-30 11:13:31> __progress_overall 0.273
2023-03-30 11:13:31> Processing of D:\PXD003881\B03_13_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_13_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:31> __progress_current 0.600
2023-03-30 11:13:31> __progress_overall 0.277
2023-03-30 11:13:31> Processing of D:\PXD003881\B03_14_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_14_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:31> __progress_current 0.650
2023-03-30 11:13:31> __progress_overall 0.281
2023-03-30 11:13:31> Processing of D:\PXD003881\B03_15_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_15_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:31> __progress_current 0.700
2023-03-30 11:13:31> __progress_overall 0.285
2023-03-30 11:13:31> Processing of D:\PXD003881\B03_16_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_16_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:31> __progress_current 0.750
2023-03-30 11:13:31> __progress_overall 0.288
2023-03-30 11:13:31> Processing of D:\PXD003881\B03_17_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_17_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:31> __progress_current 0.800
2023-03-30 11:13:31> __progress_overall 0.292
2023-03-30 11:13:31> Processing of D:\PXD003881\B03_18_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_18_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:31> __progress_current 0.850
2023-03-30 11:13:31> __progress_overall 0.296
2023-03-30 11:13:31> Processing of D:\PXD003881\B03_19_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_19_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:31> __progress_current 0.900
2023-03-30 11:13:31> __progress_overall 0.300
2023-03-30 11:13:31> Processing of D:\PXD003881\B03_20_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_20_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:31> __progress_current 0.950
2023-03-30 11:13:31> __progress_overall 0.304
2023-03-30 11:13:31> Processing of D:\PXD003881\B03_21_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_21_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:31> __progress_current 1.000
2023-03-30 11:13:31> __progress_overall 0.308
2023-03-30 11:13:31> Attempting to rerun failed runs with 1 processes
2023-03-30 11:13:31> AlphaPool was set to 1 processes. Setting max to 1.
2023-03-30 11:13:36> Processing of D:\PXD003881\B03_02_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_02_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:36> __progress_current 0.050
2023-03-30 11:13:36> __progress_overall 0.235
2023-03-30 11:13:36> Processing of D:\PXD003881\B03_03_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_03_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:36> __progress_current 0.100
2023-03-30 11:13:36> __progress_overall 0.238
2023-03-30 11:13:36> Processing of D:\PXD003881\B03_04_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_04_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:36> __progress_current 0.150
2023-03-30 11:13:36> __progress_overall 0.242
2023-03-30 11:13:36> Processing of D:\PXD003881\B03_05_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_05_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:36> __progress_current 0.200
2023-03-30 11:13:36> __progress_overall 0.246
2023-03-30 11:13:36> Processing of D:\PXD003881\B03_06_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_06_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:36> __progress_current 0.250
2023-03-30 11:13:36> __progress_overall 0.250
2023-03-30 11:13:36> Processing of D:\PXD003881\B03_07_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_07_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:36> __progress_current 0.300
2023-03-30 11:13:36> __progress_overall 0.254
2023-03-30 11:13:36> Processing of D:\PXD003881\B03_08_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_08_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:36> __progress_current 0.350
2023-03-30 11:13:36> __progress_overall 0.258
2023-03-30 11:13:36> Processing of D:\PXD003881\B03_09_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_09_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:36> __progress_current 0.400
2023-03-30 11:13:36> __progress_overall 0.262
2023-03-30 11:13:36> Processing of D:\PXD003881\B03_10_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_10_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:36> __progress_current 0.450
2023-03-30 11:13:36> __progress_overall 0.265
2023-03-30 11:13:36> Processing of D:\PXD003881\B03_11_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_11_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:36> __progress_current 0.500
2023-03-30 11:13:36> __progress_overall 0.269
2023-03-30 11:13:36> Processing of D:\PXD003881\B03_12_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_12_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:36> __progress_current 0.550
2023-03-30 11:13:36> __progress_overall 0.273
2023-03-30 11:13:36> Processing of D:\PXD003881\B03_13_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_13_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:36> __progress_current 0.600
2023-03-30 11:13:36> __progress_overall 0.277
2023-03-30 11:13:36> Processing of D:\PXD003881\B03_14_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_14_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:36> __progress_current 0.650
2023-03-30 11:13:36> __progress_overall 0.281
2023-03-30 11:13:36> Processing of D:\PXD003881\B03_15_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_15_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:36> __progress_current 0.700
2023-03-30 11:13:36> __progress_overall 0.285
2023-03-30 11:13:36> Processing of D:\PXD003881\B03_16_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_16_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:36> __progress_current 0.750
2023-03-30 11:13:36> __progress_overall 0.288
2023-03-30 11:13:36> Processing of D:\PXD003881\B03_17_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_17_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:36> __progress_current 0.800
2023-03-30 11:13:36> __progress_overall 0.292
2023-03-30 11:13:36> Processing of D:\PXD003881\B03_18_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_18_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:36> __progress_current 0.850
2023-03-30 11:13:36> __progress_overall 0.296
2023-03-30 11:13:36> Processing of D:\PXD003881\B03_19_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_19_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:36> __progress_current 0.900
2023-03-30 11:13:36> __progress_overall 0.300
2023-03-30 11:13:36> Processing of D:\PXD003881\B03_20_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_20_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:36> __progress_current 0.950
2023-03-30 11:13:36> __progress_overall 0.304
2023-03-30 11:13:36> Processing of D:\PXD003881\B03_21_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_21_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:13:36> __progress_current 1.000
2023-03-30 11:13:36> __progress_overall 0.308
2023-03-30 11:13:47> First search complete.
2023-03-30 11:13:47> __progress_current 1.000
2023-03-30 11:13:47> __progress_overall 0.308
2023-03-30 11:13:47> ==== recalibrate_data ====
2023-03-30 11:13:47> __current_task recalibrate_data
2023-03-30 11:13:47> __progress_current 0.000
2023-03-30 11:13:47> __progress_overall 0.308
2023-03-30 11:13:47> Processing 20 files for step calibrate_hdf
2023-03-30 11:13:47> AlphaPool was set to 20 processes. Setting max to 20.
2023-03-30 11:13:58> Processing of D:\PXD003881\B03_02_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_02_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:13:58> __progress_current 0.050
2023-03-30 11:13:58> __progress_overall 0.312
2023-03-30 11:13:59> Processing of D:\PXD003881\B03_03_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_03_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:13:59> __progress_current 0.100
2023-03-30 11:13:59> __progress_overall 0.315
2023-03-30 11:13:59> Processing of D:\PXD003881\B03_04_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_04_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:13:59> __progress_current 0.150
2023-03-30 11:13:59> __progress_overall 0.319
2023-03-30 11:13:59> Processing of D:\PXD003881\B03_05_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_05_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:13:59> __progress_current 0.200
2023-03-30 11:13:59> __progress_overall 0.323
2023-03-30 11:13:59> Processing of D:\PXD003881\B03_06_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_06_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:13:59> __progress_current 0.250
2023-03-30 11:13:59> __progress_overall 0.327
2023-03-30 11:13:59> Processing of D:\PXD003881\B03_07_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_07_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:13:59> __progress_current 0.300
2023-03-30 11:13:59> __progress_overall 0.331
2023-03-30 11:13:59> Processing of D:\PXD003881\B03_08_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_08_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:13:59> __progress_current 0.350
2023-03-30 11:13:59> __progress_overall 0.335
2023-03-30 11:13:59> Processing of D:\PXD003881\B03_09_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_09_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:13:59> __progress_current 0.400
2023-03-30 11:13:59> __progress_overall 0.338
2023-03-30 11:13:59> Processing of D:\PXD003881\B03_10_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_10_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:13:59> __progress_current 0.450
2023-03-30 11:13:59> __progress_overall 0.342
2023-03-30 11:13:59> Processing of D:\PXD003881\B03_11_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_11_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:13:59> __progress_current 0.500
2023-03-30 11:13:59> __progress_overall 0.346
2023-03-30 11:13:59> Processing of D:\PXD003881\B03_12_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_12_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:13:59> __progress_current 0.550
2023-03-30 11:13:59> __progress_overall 0.350
2023-03-30 11:13:59> Processing of D:\PXD003881\B03_13_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_13_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:13:59> __progress_current 0.600
2023-03-30 11:13:59> __progress_overall 0.354
2023-03-30 11:13:59> Processing of D:\PXD003881\B03_14_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_14_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:13:59> __progress_current 0.650
2023-03-30 11:13:59> __progress_overall 0.358
2023-03-30 11:13:59> Processing of D:\PXD003881\B03_15_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_15_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:13:59> __progress_current 0.700
2023-03-30 11:13:59> __progress_overall 0.362
2023-03-30 11:13:59> Processing of D:\PXD003881\B03_16_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_16_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:13:59> __progress_current 0.750
2023-03-30 11:13:59> __progress_overall 0.365
2023-03-30 11:13:59> Processing of D:\PXD003881\B03_17_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_17_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:13:59> __progress_current 0.800
2023-03-30 11:13:59> __progress_overall 0.369
2023-03-30 11:13:59> Processing of D:\PXD003881\B03_18_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_18_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:13:59> __progress_current 0.850
2023-03-30 11:13:59> __progress_overall 0.373
2023-03-30 11:13:59> Processing of D:\PXD003881\B03_19_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_19_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:13:59> __progress_current 0.900
2023-03-30 11:13:59> __progress_overall 0.377
2023-03-30 11:13:59> Processing of D:\PXD003881\B03_20_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_20_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:13:59> __progress_current 0.950
2023-03-30 11:13:59> __progress_overall 0.381
2023-03-30 11:13:59> Processing of D:\PXD003881\B03_21_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_21_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:13:59> __progress_current 1.000
2023-03-30 11:13:59> __progress_overall 0.385
2023-03-30 11:13:59> Attempting to rerun failed runs with 10 processes
2023-03-30 11:13:59> AlphaPool was set to 10 processes. Setting max to 10.
2023-03-30 11:14:05> Processing of D:\PXD003881\B03_02_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_02_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:14:05> __progress_current 0.050
2023-03-30 11:14:05> __progress_overall 0.312
2023-03-30 11:14:05> Processing of D:\PXD003881\B03_03_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_03_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:14:05> __progress_current 0.100
2023-03-30 11:14:05> __progress_overall 0.315
2023-03-30 11:14:05> Processing of D:\PXD003881\B03_04_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_04_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:14:05> __progress_current 0.150
2023-03-30 11:14:05> __progress_overall 0.319
2023-03-30 11:14:05> Processing of D:\PXD003881\B03_05_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_05_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:14:05> __progress_current 0.200
2023-03-30 11:14:05> __progress_overall 0.323
2023-03-30 11:14:05> Processing of D:\PXD003881\B03_06_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_06_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:14:05> __progress_current 0.250
2023-03-30 11:14:05> __progress_overall 0.327
2023-03-30 11:14:05> Processing of D:\PXD003881\B03_07_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_07_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:14:05> __progress_current 0.300
2023-03-30 11:14:05> __progress_overall 0.331
2023-03-30 11:14:05> Processing of D:\PXD003881\B03_08_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_08_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:14:05> __progress_current 0.350
2023-03-30 11:14:05> __progress_overall 0.335
2023-03-30 11:14:05> Processing of D:\PXD003881\B03_09_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_09_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:14:05> __progress_current 0.400
2023-03-30 11:14:05> __progress_overall 0.338
2023-03-30 11:14:05> Processing of D:\PXD003881\B03_10_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_10_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:14:05> __progress_current 0.450
2023-03-30 11:14:05> __progress_overall 0.342
2023-03-30 11:14:05> Processing of D:\PXD003881\B03_11_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_11_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:14:05> __progress_current 0.500
2023-03-30 11:14:05> __progress_overall 0.346
2023-03-30 11:14:05> Processing of D:\PXD003881\B03_12_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_12_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:14:05> __progress_current 0.550
2023-03-30 11:14:05> __progress_overall 0.350
2023-03-30 11:14:05> Processing of D:\PXD003881\B03_13_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_13_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:14:05> __progress_current 0.600
2023-03-30 11:14:05> __progress_overall 0.354
2023-03-30 11:14:05> Processing of D:\PXD003881\B03_14_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_14_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:14:05> __progress_current 0.650
2023-03-30 11:14:05> __progress_overall 0.358
2023-03-30 11:14:05> Processing of D:\PXD003881\B03_15_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_15_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:14:05> __progress_current 0.700
2023-03-30 11:14:05> __progress_overall 0.362
2023-03-30 11:14:05> Processing of D:\PXD003881\B03_16_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_16_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:14:05> __progress_current 0.750
2023-03-30 11:14:05> __progress_overall 0.365
2023-03-30 11:14:05> Processing of D:\PXD003881\B03_17_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_17_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:14:05> __progress_current 0.800
2023-03-30 11:14:05> __progress_overall 0.369
2023-03-30 11:14:05> Processing of D:\PXD003881\B03_18_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_18_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:14:05> __progress_current 0.850
2023-03-30 11:14:05> __progress_overall 0.373
2023-03-30 11:14:05> Processing of D:\PXD003881\B03_19_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_19_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:14:05> __progress_current 0.900
2023-03-30 11:14:05> __progress_overall 0.377
2023-03-30 11:14:05> Processing of D:\PXD003881\B03_20_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_20_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:14:05> __progress_current 0.950
2023-03-30 11:14:05> __progress_overall 0.381
2023-03-30 11:14:05> Processing of D:\PXD003881\B03_21_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step calibrate_hdf failed. Exception 'Dataset features does not exist for group / of <HDF_File D:\\PXD003881\\B03_21_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>.'
2023-03-30 11:14:05> __progress_current 1.000
2023-03-30 11:14:05> __progress_overall 0.385
2023-03-30 11:14:05> __progress_current 1.000
2023-03-30 11:14:05> __progress_overall 0.385
2023-03-30 11:14:05> ==== search_data ====
2023-03-30 11:14:05> __current_task search_data
2023-03-30 11:14:05> __progress_current 0.000
2023-03-30 11:14:05> __progress_overall 0.385
2023-03-30 11:14:05> Starting second search with DB.
2023-03-30 11:14:05> Processing 20 files for step search_db
2023-03-30 11:14:05> Searching. Setting Process limit to 1.
2023-03-30 11:14:05> AlphaPool was set to 1 processes. Setting max to 1.
2023-03-30 11:14:12> Processing of D:\PXD003881\B03_02_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_02_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:12> __progress_current 0.050
2023-03-30 11:14:12> __progress_overall 0.388
2023-03-30 11:14:12> Processing of D:\PXD003881\B03_03_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_03_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:12> __progress_current 0.100
2023-03-30 11:14:12> __progress_overall 0.392
2023-03-30 11:14:12> Processing of D:\PXD003881\B03_04_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_04_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:12> __progress_current 0.150
2023-03-30 11:14:12> __progress_overall 0.396
2023-03-30 11:14:12> Processing of D:\PXD003881\B03_05_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_05_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:12> __progress_current 0.200
2023-03-30 11:14:12> __progress_overall 0.400
2023-03-30 11:14:12> Processing of D:\PXD003881\B03_06_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_06_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:12> __progress_current 0.250
2023-03-30 11:14:12> __progress_overall 0.404
2023-03-30 11:14:12> Processing of D:\PXD003881\B03_07_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_07_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:12> __progress_current 0.300
2023-03-30 11:14:12> __progress_overall 0.408
2023-03-30 11:14:12> Processing of D:\PXD003881\B03_08_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_08_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:12> __progress_current 0.350
2023-03-30 11:14:12> __progress_overall 0.412
2023-03-30 11:14:12> Processing of D:\PXD003881\B03_09_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_09_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:12> __progress_current 0.400
2023-03-30 11:14:12> __progress_overall 0.415
2023-03-30 11:14:12> Processing of D:\PXD003881\B03_10_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_10_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:12> __progress_current 0.450
2023-03-30 11:14:12> __progress_overall 0.419
2023-03-30 11:14:12> Processing of D:\PXD003881\B03_11_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_11_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:12> __progress_current 0.500
2023-03-30 11:14:12> __progress_overall 0.423
2023-03-30 11:14:12> Processing of D:\PXD003881\B03_12_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_12_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:12> __progress_current 0.550
2023-03-30 11:14:12> __progress_overall 0.427
2023-03-30 11:14:12> Processing of D:\PXD003881\B03_13_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_13_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:12> __progress_current 0.600
2023-03-30 11:14:12> __progress_overall 0.431
2023-03-30 11:14:12> Processing of D:\PXD003881\B03_14_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_14_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:12> __progress_current 0.650
2023-03-30 11:14:12> __progress_overall 0.435
2023-03-30 11:14:12> Processing of D:\PXD003881\B03_15_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_15_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:12> __progress_current 0.700
2023-03-30 11:14:12> __progress_overall 0.438
2023-03-30 11:14:12> Processing of D:\PXD003881\B03_16_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_16_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:12> __progress_current 0.750
2023-03-30 11:14:12> __progress_overall 0.442
2023-03-30 11:14:12> Processing of D:\PXD003881\B03_17_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_17_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:12> __progress_current 0.800
2023-03-30 11:14:12> __progress_overall 0.446
2023-03-30 11:14:12> Processing of D:\PXD003881\B03_18_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_18_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:12> __progress_current 0.850
2023-03-30 11:14:12> __progress_overall 0.450
2023-03-30 11:14:12> Processing of D:\PXD003881\B03_19_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_19_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:12> __progress_current 0.900
2023-03-30 11:14:12> __progress_overall 0.454
2023-03-30 11:14:12> Processing of D:\PXD003881\B03_20_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_20_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:12> __progress_current 0.950
2023-03-30 11:14:12> __progress_overall 0.458
2023-03-30 11:14:12> Processing of D:\PXD003881\B03_21_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_21_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:12> __progress_current 1.000
2023-03-30 11:14:12> __progress_overall 0.462
2023-03-30 11:14:12> Attempting to rerun failed runs with 1 processes
2023-03-30 11:14:12> AlphaPool was set to 1 processes. Setting max to 1.
2023-03-30 11:14:17> Processing of D:\PXD003881\B03_02_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_02_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:17> __progress_current 0.050
2023-03-30 11:14:17> __progress_overall 0.388
2023-03-30 11:14:17> Processing of D:\PXD003881\B03_03_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_03_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:17> __progress_current 0.100
2023-03-30 11:14:17> __progress_overall 0.392
2023-03-30 11:14:17> Processing of D:\PXD003881\B03_04_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_04_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:17> __progress_current 0.150
2023-03-30 11:14:17> __progress_overall 0.396
2023-03-30 11:14:17> Processing of D:\PXD003881\B03_05_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_05_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:17> __progress_current 0.200
2023-03-30 11:14:17> __progress_overall 0.400
2023-03-30 11:14:17> Processing of D:\PXD003881\B03_06_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_06_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:17> __progress_current 0.250
2023-03-30 11:14:17> __progress_overall 0.404
2023-03-30 11:14:17> Processing of D:\PXD003881\B03_07_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_07_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:17> __progress_current 0.300
2023-03-30 11:14:17> __progress_overall 0.408
2023-03-30 11:14:17> Processing of D:\PXD003881\B03_08_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_08_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:17> __progress_current 0.350
2023-03-30 11:14:17> __progress_overall 0.412
2023-03-30 11:14:17> Processing of D:\PXD003881\B03_09_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_09_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:17> __progress_current 0.400
2023-03-30 11:14:17> __progress_overall 0.415
2023-03-30 11:14:17> Processing of D:\PXD003881\B03_10_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_10_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:17> __progress_current 0.450
2023-03-30 11:14:17> __progress_overall 0.419
2023-03-30 11:14:17> Processing of D:\PXD003881\B03_11_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_11_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:17> __progress_current 0.500
2023-03-30 11:14:17> __progress_overall 0.423
2023-03-30 11:14:17> Processing of D:\PXD003881\B03_12_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_12_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:17> __progress_current 0.550
2023-03-30 11:14:17> __progress_overall 0.427
2023-03-30 11:14:17> Processing of D:\PXD003881\B03_13_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_13_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:17> __progress_current 0.600
2023-03-30 11:14:17> __progress_overall 0.431
2023-03-30 11:14:17> Processing of D:\PXD003881\B03_14_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_14_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:17> __progress_current 0.650
2023-03-30 11:14:17> __progress_overall 0.435
2023-03-30 11:14:17> Processing of D:\PXD003881\B03_15_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_15_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:17> __progress_current 0.700
2023-03-30 11:14:17> __progress_overall 0.438
2023-03-30 11:14:17> Processing of D:\PXD003881\B03_16_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_16_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:17> __progress_current 0.750
2023-03-30 11:14:17> __progress_overall 0.442
2023-03-30 11:14:17> Processing of D:\PXD003881\B03_17_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_17_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:17> __progress_current 0.800
2023-03-30 11:14:17> __progress_overall 0.446
2023-03-30 11:14:17> Processing of D:\PXD003881\B03_18_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_18_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:17> __progress_current 0.850
2023-03-30 11:14:17> __progress_overall 0.450
2023-03-30 11:14:17> Processing of D:\PXD003881\B03_19_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_19_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:17> __progress_current 0.900
2023-03-30 11:14:17> __progress_overall 0.454
2023-03-30 11:14:17> Processing of D:\PXD003881\B03_20_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_20_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:17> __progress_current 0.950
2023-03-30 11:14:17> __progress_overall 0.458
2023-03-30 11:14:17> Processing of D:\PXD003881\B03_21_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step search_db failed. Exception "Group Raw/MS1_scans does not exist in <HDF_File D:\\PXD003881\\B03_21_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.ms_data.hdf>. Error 'Unable to open object (component not found)'"
2023-03-30 11:14:17> __progress_current 1.000
2023-03-30 11:14:17> __progress_overall 0.462
2023-03-30 11:14:29> Second search complete.
2023-03-30 11:14:29> __progress_current 1.000
2023-03-30 11:14:29> __progress_overall 0.462
2023-03-30 11:14:29> ==== score ====
2023-03-30 11:14:29> __current_task score
2023-03-30 11:14:29> __progress_current 0.000
2023-03-30 11:14:29> __progress_overall 0.462
2023-03-30 11:14:29> Processing 20 files for step score_hdf
2023-03-30 11:14:29> AlphaPool was set to 20 processes. Setting max to 20.
2023-03-30 11:14:39> Processing of D:\PXD003881\B03_02_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step score_hdf succeeded. 5.00 %
2023-03-30 11:14:39> __progress_current 0.050
2023-03-30 11:14:39> __progress_overall 0.465
2023-03-30 11:14:40> Processing of D:\PXD003881\B03_03_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step score_hdf succeeded. 10.00 %
2023-03-30 11:14:40> __progress_current 0.100
2023-03-30 11:14:40> __progress_overall 0.469
2023-03-30 11:14:40> Processing of D:\PXD003881\B03_04_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step score_hdf succeeded. 15.00 %
2023-03-30 11:14:40> __progress_current 0.150
2023-03-30 11:14:40> __progress_overall 0.473
2023-03-30 11:14:40> Processing of D:\PXD003881\B03_05_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step score_hdf succeeded. 20.00 %
2023-03-30 11:14:40> __progress_current 0.200
2023-03-30 11:14:40> __progress_overall 0.477
2023-03-30 11:14:40> Processing of D:\PXD003881\B03_06_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step score_hdf succeeded. 25.00 %
2023-03-30 11:14:40> __progress_current 0.250
2023-03-30 11:14:40> __progress_overall 0.481
2023-03-30 11:14:40> Processing of D:\PXD003881\B03_07_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step score_hdf succeeded. 30.00 %
2023-03-30 11:14:40> __progress_current 0.300
2023-03-30 11:14:40> __progress_overall 0.485
2023-03-30 11:14:40> Processing of D:\PXD003881\B03_08_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step score_hdf succeeded. 35.00 %
2023-03-30 11:14:40> __progress_current 0.350
2023-03-30 11:14:40> __progress_overall 0.488
2023-03-30 11:14:40> Processing of D:\PXD003881\B03_09_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step score_hdf succeeded. 40.00 %
2023-03-30 11:14:40> __progress_current 0.400
2023-03-30 11:14:40> __progress_overall 0.492
2023-03-30 11:14:40> Processing of D:\PXD003881\B03_10_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step score_hdf succeeded. 45.00 %
2023-03-30 11:14:40> __progress_current 0.450
2023-03-30 11:14:40> __progress_overall 0.496
2023-03-30 11:14:40> Processing of D:\PXD003881\B03_11_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step score_hdf succeeded. 50.00 %
2023-03-30 11:14:40> __progress_current 0.500
2023-03-30 11:14:40> __progress_overall 0.500
2023-03-30 11:14:40> Processing of D:\PXD003881\B03_12_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step score_hdf succeeded. 55.00 %
2023-03-30 11:14:40> __progress_current 0.550
2023-03-30 11:14:40> __progress_overall 0.504
2023-03-30 11:14:40> Processing of D:\PXD003881\B03_13_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step score_hdf succeeded. 60.00 %
2023-03-30 11:14:40> __progress_current 0.600
2023-03-30 11:14:40> __progress_overall 0.508
2023-03-30 11:14:40> Processing of D:\PXD003881\B03_14_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step score_hdf succeeded. 65.00 %
2023-03-30 11:14:40> __progress_current 0.650
2023-03-30 11:14:40> __progress_overall 0.512
2023-03-30 11:14:40> Processing of D:\PXD003881\B03_15_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step score_hdf succeeded. 70.00 %
2023-03-30 11:14:40> __progress_current 0.700
2023-03-30 11:14:40> __progress_overall 0.515
2023-03-30 11:14:40> Processing of D:\PXD003881\B03_16_150304_human_ecoli_E_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step score_hdf succeeded. 75.00 %
2023-03-30 11:14:40> __progress_current 0.750
2023-03-30 11:14:40> __progress_overall 0.519
2023-03-30 11:14:40> Processing of D:\PXD003881\B03_17_150304_human_ecoli_D_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step score_hdf succeeded. 80.00 %
2023-03-30 11:14:40> __progress_current 0.800
2023-03-30 11:14:40> __progress_overall 0.523
2023-03-30 11:14:40> Processing of D:\PXD003881\B03_18_150304_human_ecoli_C_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step score_hdf succeeded. 85.00 %
2023-03-30 11:14:40> __progress_current 0.850
2023-03-30 11:14:40> __progress_overall 0.527
2023-03-30 11:14:40> Processing of D:\PXD003881\B03_19_150304_human_ecoli_B_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step score_hdf succeeded. 90.00 %
2023-03-30 11:14:40> __progress_current 0.900
2023-03-30 11:14:40> __progress_overall 0.531
2023-03-30 11:14:40> Processing of D:\PXD003881\B03_20_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step score_hdf succeeded. 95.00 %
2023-03-30 11:14:40> __progress_current 0.950
2023-03-30 11:14:40> __progress_overall 0.535
2023-03-30 11:14:40> Processing of D:\PXD003881\B03_21_150304_human_ecoli_A_3ul_3um_column_95_HCD_OT_2hrs_30B_9B.mzML for step score_hdf succeeded. 100.00 %
2023-03-30 11:14:40> __progress_current 1.000
2023-03-30 11:14:40> __progress_overall 0.538
2023-03-30 11:14:41> __progress_current 1.000
2023-03-30 11:14:41> __progress_overall 0.538
2023-03-30 11:14:41> ==== align ====
2023-03-30 11:14:41> __current_task align
2023-03-30 11:14:41> __progress_current 0.000
2023-03-30 11:14:41> __progress_overall 0.538
2023-03-30 11:14:41> __progress_current 0.000
2023-03-30 11:14:41> __progress_overall 0.538