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Last active August 29, 2015 13:57
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Wigtools install log
21:38 ~ $ cd software/
21:38 software $ ls
aspera-connect-2.7.9.58060-linux-64.sh HTSeq-0.5.4p5 localpython mercurial-2.3 Python-2.7.6rc1 rmate ruby-2.0.0-p353 sratoolkit.2.1.16-centos_linux64
cufflinks2_rc.Linux_x86_64 HTSeq-0.5.4p5.tar localruby numpy Python-2.7.6rc1.tgz Rtmp ruby-2.0.0-p353.tar.gz
21:38 software $
21:38 software $
21:38 software $ git archive --format=zip -9 --remote=git://genome-source.cse.ucsc.edu/kent.git beta src/userApps > userApps.zip
21:38 software $ unzip -d userApps -j userApps.zip
Archive: userApps.zip
302e8a718e30b3025bceab6816841c8c72226291
inflating: userApps/GenomeBrowserLicense.pdf
inflating: userApps/Makefile
inflating: userApps/README
inflating: userApps/fetchKentSource.sh
inflating: userApps/licenseBlat.txt
inflating: userApps/licenseUcscGenomeBrowser.txt
21:38 software $ rm userApps.zip
21:38 software $ cd userApps
21:38 userApps $ make fetchSource
./fetchKentSource.sh
fetch samtabix
fetch kent source part 1 of 5
fetch kent source part 2 of 5
fetch kent source part 3 of 5
fetch kent source part 4 of 5
fetch kent source part 5 of 5
size of fetched kent source tree: 55M kent
number of files in kent source tree: 8151
21:39 userApps $ make
cd samtabix && make
make[1]: Entering directory `/home/bst/student/lcollado/software/userApps/samtabix'
make[2]: Entering directory `/home/bst/student/lcollado/software/userApps/samtabix'
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/samtabix'
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. bgzf.c -o bgzf.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. kstring.c -o kstring.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. bam_aux.c -o bam_aux.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. bam.c -o bam.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. bam_import.c -o bam_import.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. sam.c -o sam.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. bam_index.c -o bam_index.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. bam_pileup.c -o bam_pileup.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. bam_lpileup.c -o bam_lpileup.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. bam_md.c -o bam_md.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. razf.c -o razf.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. faidx.c -o faidx.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. bedidx.c -o bedidx.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. knetfile.c -o knetfile.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. bam_sort.c -o bam_sort.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. sam_header.c -o sam_header.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. bam_reheader.c -o bam_reheader.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. kprobaln.c -o kprobaln.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. bam_cat.c -o bam_cat.o
ar -csru libbam.a bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o bam_pileup.o bam_lpileup.o bam_md.o razf.o faidx.o bedidx.o knetfile.o bam_sort.o sam_header.o bam_reheader.o kprobaln.o bam_cat.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. index.c -o index.o
ar -csru libtabix.a index.o bgzf.o kstring.o knetfile.o bedidx.o
ar -csru libsamtabix.a bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o bam_pileup.o bam_lpileup.o bam_md.o razf.o faidx.o bedidx.o knetfile.o bam_sort.o sam_header.o bam_reheader.o kprobaln.o bam_cat.o index.o
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/samtabix'
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/samtabix/bcftools'
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I.. -I. bcf.c -o bcf.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I.. -I. vcf.c -o vcf.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I.. -I. bcfutils.c -o bcfutils.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I.. -I. prob1.c -o prob1.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I.. -I. em.c -o em.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I.. -I. kfunc.c -o kfunc.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I.. -I. kmin.c -o kmin.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I.. -I. index.c -o index.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I.. -I. fet.c -o fet.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I.. -I. mut.c -o mut.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I.. -I. bcf2qcall.c -o bcf2qcall.o
ar -csru libbcf.a bcf.o vcf.o bcfutils.o prob1.o em.o kfunc.o kmin.o index.o fet.o mut.o bcf2qcall.o
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/samtabix/bcftools'
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/samtabix/misc'
make[3]: Nothing to be done for `lib'.
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/samtabix/misc'
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. bam_tview.c -o bam_tview.o
bam_tview.c:434:2: warning: #warning "No curses library is available; tview is disabled."
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. bam_plcmd.c -o bam_plcmd.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. sam_view.c -o sam_view.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. bam_rmdup.c -o bam_rmdup.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. bam_rmdupse.c -o bam_rmdupse.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. bam_mate.c -o bam_mate.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. bam_stat.c -o bam_stat.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. bam_color.c -o bam_color.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. bamtk.c -o bamtk.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. kaln.c -o kaln.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. bam2bcf.c -o bam2bcf.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. bam2bcf_indel.c -o bam2bcf_indel.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. errmod.c -o errmod.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. sample.c -o sample.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. cut_target.c -o cut_target.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. phase.c -o phase.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. bam2depth.c -o bam2depth.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. bam_qa.c -o bam_qa.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. padding.c -o padding.o
gcc -g -Wall -O2 -o samtools bam_tview.o bam_plcmd.o sam_view.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o cut_target.o phase.o bam2depth.o bam_qa.o padding.o libbam.a -Lbcftools -lbcf -lm -lz
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. tabix.c -o tabix.o
gcc -g -Wall -O2 -o tabix tabix.o -L. -ltabix -lm -lz
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I. bgzip.c -o bgzip.o
gcc -g -Wall -O2 -o bgzip bgzf.o bgzip.o knetfile.o -lz
make[2]: Leaving directory `/home/bst/student/lcollado/software/userApps/samtabix'
make[2]: Entering directory `/home/bst/student/lcollado/software/userApps/samtabix/bcftools'
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I.. -I. call1.c -o call1.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=0 -DKNETFILE_HOOKS -I.. -I. main.c -o main.o
gcc -g -Wall -O2 -o bcftools call1.o main.o ../kstring.o ../bgzf.o ../knetfile.o ../bedidx.o -L. -lbcf -lm -lz
make[2]: Leaving directory `/home/bst/student/lcollado/software/userApps/samtabix/bcftools'
make[2]: Entering directory `/home/bst/student/lcollado/software/userApps/samtabix/misc'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/bst/student/lcollado/software/userApps/samtabix/misc'
make[1]: Leaving directory `/home/bst/student/lcollado/software/userApps/samtabix'
cd kent/src && make libs
make[1]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src'
cd lib && make
make[2]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/lib'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o aliType.o -c aliType.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o annoAssembly.o -c annoAssembly.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o annoFilter.o -c annoFilter.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o annoFormatter.o -c annoFormatter.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o annoFormatTab.o -c annoFormatTab.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o annoGrator.o -c annoGrator.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o annoGrateWig.o -c annoGrateWig.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o annoGratorQuery.o -c annoGratorQuery.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o annoOption.o -c annoOption.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o annoRow.o -c annoRow.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o annoStreamer.o -c annoStreamer.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o annoStreamBigBed.o -c annoStreamBigBed.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o annoStreamBigWig.o -c annoStreamBigWig.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o annoStreamTab.o -c annoStreamTab.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o annoStreamVcf.o -c annoStreamVcf.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o apacheLog.o -c apacheLog.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o asParse.o -c asParse.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o axt.o -c axt.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o axtAffine.o -c axtAffine.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bamFile.o -c bamFile.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o base64.o -c base64.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o basicBed.o -c basicBed.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bbiRead.o -c bbiRead.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bbiWrite.o -c bbiWrite.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bigBed.o -c bigBed.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o binRange.o -c binRange.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bits.o -c bits.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o blastOut.o -c blastOut.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o blastParse.o -c blastParse.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o boxClump.o -c boxClump.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o boxLump.o -c boxLump.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bPlusTree.o -c bPlusTree.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bwgCreate.o -c bwgCreate.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bwgQuery.o -c bwgQuery.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bwgValsOnChrom.o -c bwgValsOnChrom.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o cda.o -c cda.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o chain.o -c chain.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o chainBlock.o -c chainBlock.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o chainConnect.o -c chainConnect.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o chainToAxt.o -c chainToAxt.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o chainToPsl.o -c chainToPsl.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o cheapcgi.o -c cheapcgi.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o cirTree.o -c cirTree.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o codebias.o -c codebias.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o colHash.o -c colHash.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o common.o -c common.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o correlate.o -c correlate.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o crTree.o -c crTree.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o dgRange.o -c dgRange.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o diGraph.o -c diGraph.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o dlist.o -c dlist.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o dnaLoad.o -c dnaLoad.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o dnaMarkov.o -c dnaMarkov.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o dnaMotif.o -c dnaMotif.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o dnaseq.o -c dnaseq.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o dnautil.o -c dnautil.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o dtdParse.o -c dtdParse.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o dyOut.o -c dyOut.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o dystring.o -c dystring.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o elmTree.o -c elmTree.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o emblParse.o -c emblParse.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o errCatch.o -c errCatch.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o errabort.o -c errabort.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o fa.o -c fa.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o ffAli.o -c ffAli.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o ffScore.o -c ffScore.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o fieldedTable.o -c fieldedTable.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o filePath.o -c filePath.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o fixColor.o -c fixColor.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o flydna.o -c flydna.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o fof.o -c fof.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgCourier10.o -c font/mgCourier10.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgCourier12.o -c font/mgCourier12.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgCourier14.o -c font/mgCourier14.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgCourier18.o -c font/mgCourier18.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgCourier24.o -c font/mgCourier24.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgCourier34.o -c font/mgCourier34.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgCourier8.o -c font/mgCourier8.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgHelvetica10.o -c font/mgHelvetica10.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgHelvetica12.o -c font/mgHelvetica12.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgHelvetica14.o -c font/mgHelvetica14.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgHelvetica18.o -c font/mgHelvetica18.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgHelvetica24.o -c font/mgHelvetica24.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgHelvetica34.o -c font/mgHelvetica34.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgHelvetica8.o -c font/mgHelvetica8.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgHelveticaBold10.o -c font/mgHelveticaBold10.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgHelveticaBold12.o -c font/mgHelveticaBold12.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgHelveticaBold14.o -c font/mgHelveticaBold14.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgHelveticaBold18.o -c font/mgHelveticaBold18.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgHelveticaBold24.o -c font/mgHelveticaBold24.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgHelveticaBold34.o -c font/mgHelveticaBold34.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgHelveticaBold8.o -c font/mgHelveticaBold8.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgSixhi6.o -c font/mgSixhi6.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgSail8.o -c font/mgSail8.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgTimes10.o -c font/mgTimes10.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgTimes12.o -c font/mgTimes12.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgTimes14.o -c font/mgTimes14.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgTimes18.o -c font/mgTimes18.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgTimes24.o -c font/mgTimes24.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgTimes34.o -c font/mgTimes34.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgTimes8.o -c font/mgTimes8.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o font/mgMenlo12.o -c font/mgMenlo12.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o fuzzyShow.o -c fuzzyShow.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o gapCalc.o -c gapCalc.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o gdf.o -c gdf.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o gemfont.o -c gemfont.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o genomeRangeTree.o -c genomeRangeTree.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o gfNet.o -c gfNet.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o gff.o -c gff.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o gff3.o -c gff3.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o gfxPoly.o -c gfxPoly.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o gifLabel.o -c gifLabel.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o hacTree.o -c hacTree.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o hash.o -c hash.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o hex.o -c hex.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o histogram.o -c histogram.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o hmmPfamParse.o -c hmmPfamParse.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o hmmstats.o -c hmmstats.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o htmlPage.o -c htmlPage.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o htmshell.o -c htmshell.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o hmac.o -c hmac.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o https.o -c https.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o intExp.o -c intExp.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o intValTree.o -c intValTree.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o internet.o -c internet.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o itsa.o -c itsa.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o iupac.o -c iupac.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o jointalign.o -c jointalign.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o jpegSize.o -c jpegSize.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o jsonParse.o -c jsonParse.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o keys.o -c keys.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o knetUdc.o -c knetUdc.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o kxTok.o -c kxTok.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o linefile.o -c linefile.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o lineFileOnBigBed.o -c lineFileOnBigBed.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o localmem.o -c localmem.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o log.o -c log.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o maf.o -c maf.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o mafFromAxt.o -c mafFromAxt.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o mafScore.o -c mafScore.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o mailViaPipe.o -c mailViaPipe.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o md5.o -c md5.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o memalloc.o -c memalloc.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o memgfx.o -c memgfx.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o meta.o -c meta.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o metaWig.o -c metaWig.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o mgCircle.o -c mgCircle.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o mgPolygon.o -c mgPolygon.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o mime.o -c mime.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o net.o -c net.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o nib.o -c nib.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o nibTwo.o -c nibTwo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o nt4.o -c nt4.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o numObscure.o -c numObscure.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o obscure.o -c obscure.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o oldGff.o -c oldGff.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o oligoTm.o -c oligoTm.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o options.o -c options.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o osunix.o -c osunix.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o pairHmm.o -c pairHmm.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o paraFetch.o -c paraFetch.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o peakCluster.o -c peakCluster.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o phyloTree.o -c phyloTree.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o pipeline.o -c pipeline.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o portimpl.o -c portimpl.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o pngwrite.o -c pngwrite.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o psGfx.o -c psGfx.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o psPoly.o -c psPoly.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o pscmGfx.o -c pscmGfx.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o psl.o -c psl.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o pslGenoShow.o -c pslGenoShow.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o pslShow.o -c pslShow.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o pslTbl.o -c pslTbl.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o pslTransMap.o -c pslTransMap.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o pthreadWrap.o -c pthreadWrap.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o qa.o -c qa.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o quickHeap.o -c quickHeap.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o quotedP.o -c quotedP.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o ra.o -c ra.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o rainbow.o -c rainbow.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o raToStruct.o -c raToStruct.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o rbTree.o -c rbTree.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o rangeTree.o -c rangeTree.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o regexHelper.o -c regexHelper.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o repMask.o -c repMask.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o rle.o -c rle.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o rnautil.o -c rnautil.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o rqlEval.o -c rqlEval.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o rqlParse.o -c rqlParse.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o rudp.o -c rudp.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o scoreWindow.o -c scoreWindow.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o seg.o -c seg.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o seqOut.o -c seqOut.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o seqStats.o -c seqStats.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o servBrcMcw.o -c servBrcMcw.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o servCrunx.o -c servCrunx.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o servcis.o -c servcis.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o servcl.o -c servcl.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o servmsII.o -c servmsII.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o servpws.o -c servpws.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o shaRes.o -c shaRes.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o slog.o -c slog.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o snof.o -c snof.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o snofmake.o -c snofmake.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o snofsig.o -c snofsig.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o spaceSaver.o -c spaceSaver.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o spacedColumn.o -c spacedColumn.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o spacedSeed.o -c spacedSeed.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o splatAli.o -c splatAli.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o sqlList.o -c sqlList.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o sqlNum.o -c sqlNum.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o subText.o -c subText.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o sufa.o -c sufa.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o sufx.o -c sufx.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o synQueue.o -c synQueue.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o tabRow.o -c tabRow.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o textOut.o -c textOut.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o tokenizer.o -c tokenizer.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o trix.o -c trix.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o twoBit.o -c twoBit.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o udc.o -c udc.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o vcf.o -c vcf.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o vcfBits.o -c vcfBits.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o vGfx.o -c vGfx.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o vPng.o -c vPng.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o verbose.o -c verbose.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o wildcmp.o -c wildcmp.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o wormdna.o -c wormdna.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o xAli.o -c xAli.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o xa.o -c xa.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o xap.o -c xap.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o xenshow.o -c xenshow.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o xmlEscape.o -c xmlEscape.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o xp.o -c xp.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o zlibFace.o -c zlibFace.c
mkdir local
ar rcus local/jkweb.a aliType.o annoAssembly.o annoFilter.o annoFormatter.o annoFormatTab.o annoGrator.o annoGrateWig.o annoGratorQuery.o annoOption.o annoRow.o annoStreamer.o annoStreamBigBed.o annoStreamBigWig.o annoStreamTab.o annoStreamVcf.o apacheLog.o asParse.o axt.o axtAffine.o bamFile.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o bwgValsOnChrom.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dyOut.o dystring.o elmTree.o emblParse.o errCatch.o errabort.o fa.o ffAli.o ffScore.o fieldedTable.o filePath.o fixColor.o flydna.o fof.o font/mgCourier10.o font/mgCourier12.o font/mgCourier14.o font/mgCourier18.o font/mgCourier24.o font/mgCourier34.o font/mgCourier8.o font/mgHelvetica10.o font/mgHelvetica12.o font/mgHelvetica14.o font/mgHelvetica18.o font/mgHelvetica24.o font/mgHelvetica34.o font/mgHelvetica8.o font/mgHelveticaBold10.o font/mgHelveticaBold12.o font/mgHelveticaBold14.o font/mgHelveticaBold18.o font/mgHelveticaBold24.o font/mgHelveticaBold34.o font/mgHelveticaBold8.o font/mgSixhi6.o font/mgSail8.o font/mgTimes10.o font/mgTimes12.o font/mgTimes14.o font/mgTimes18.o font/mgTimes24.o font/mgTimes34.o font/mgTimes8.o font/mgMenlo12.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o hacTree.o hash.o hex.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o hmac.o https.o intExp.o intValTree.o internet.o itsa.o iupac.o jointalign.o jpegSize.o jsonParse.o keys.o knetUdc.o kxTok.o linefile.o lineFileOnBigBed.o localmem.o log.o maf.o mafFromAxt.o mafScore.o mailViaPipe.o md5.o memalloc.o memgfx.o meta.o metaWig.o mgCircle.o mgPolygon.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o paraFetch.o peakCluster.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rainbow.o raToStruct.o rbTree.o rangeTree.o regexHelper.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vcf.o vcfBits.o vGfx.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o
make[2]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/lib'
cd jkOwnLib && make
make[2]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/jkOwnLib'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bandExt.o -c bandExt.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o crudeali.o -c crudeali.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o ffAliHelp.o -c ffAliHelp.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o ffSeedExtend.o -c ffSeedExtend.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o fuzzyFind.o -c fuzzyFind.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o genoFind.o -c genoFind.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o gfBlatLib.o -c gfBlatLib.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o gfClientLib.o -c gfClientLib.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o gfInternal.o -c gfInternal.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o gfOut.o -c gfOut.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o gfPcrLib.o -c gfPcrLib.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o gfWebLib.o -c gfWebLib.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o ooc.o -c ooc.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o patSpace.o -c patSpace.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o splix.o -c splix.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o supStitch.o -c supStitch.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o trans3.o -c trans3.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o xenbig.o -c xenbig.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o xensmall.o -c xensmall.c
ar rcus ../lib/local/jkOwnLib.a bandExt.o crudeali.o ffAliHelp.o ffSeedExtend.o fuzzyFind.o genoFind.o gfBlatLib.o gfClientLib.o gfInternal.o gfOut.o gfPcrLib.o gfWebLib.o ooc.o patSpace.o splix.o supStitch.o trans3.o xenbig.o xensmall.o
make[2]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/jkOwnLib'
cd hg/lib && make
make[2]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/hg/lib'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o acemblyClass.o -c acemblyClass.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o affyAllExonProbe.o -c affyAllExonProbe.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o affyAtlas.o -c affyAtlas.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o affy10KDetails.o -c affy10KDetails.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o affy120KDetails.o -c affy120KDetails.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o affyOffset.o -c affyOffset.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o affyPairs.o -c affyPairs.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o agp.o -c agp.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o agpFrag.o -c agpFrag.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o agpGap.o -c agpGap.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o alignSeqSizes.o -c alignSeqSizes.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o altGraph.o -c altGraph.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o altGraphX.o -c altGraphX.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ancientRref.o -c ancientRref.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o annoFormatVep.o -c annoFormatVep.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o annoGratorGpVar.o -c annoGratorGpVar.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o annoGrateWigDb.o -c annoGrateWigDb.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o annoStreamDb.o -c annoStreamDb.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o annoStreamWig.o -c annoStreamWig.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o api.o -c api.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o atomDb.o -c atomDb.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o axtInfo.o -c axtInfo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o axtLib.o -c axtLib.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o bactigPos.o -c bactigPos.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o hgBam.o -c hgBam.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o baseMaskCommon.o -c baseMaskCommon.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o bdgpExprLink.o -c bdgpExprLink.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o bdgpGeneInfo.o -c bdgpGeneInfo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o bed.o -c bed.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o bed5FloatScore.o -c bed5FloatScore.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o bed5Pval.o -c bed5Pval.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o bed6FloatScore.o -c bed6FloatScore.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o bed8Attrs.o -c bed8Attrs.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o bed12Source.o -c bed12Source.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o bed12wSeq.o -c bed12wSeq.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o bedCart.o -c bedCart.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o bgiGeneInfo.o -c bgiGeneInfo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o bgiGeneSnp.o -c bgiGeneSnp.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o bgiSnp.o -c bgiSnp.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o bioImage.o -c bioImage.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o blastTab.o -c blastTab.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o blastzNet.o -c blastzNet.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o blatServers.o -c blatServers.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o borf.o -c borf.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o borkPseudoHom.o -c borkPseudoHom.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o botDelay.o -c botDelay.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cart.o -c cart.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cartDb.o -c cartDb.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cdsEvidence.o -c cdsEvidence.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cdsOrtho.o -c cdsOrtho.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cdsPick.o -c cdsPick.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cdsSpec.o -c cdsSpec.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ccdsInfo.o -c ccdsInfo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ccdsNotes.o -c ccdsNotes.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ccdsGeneMap.o -c ccdsGeneMap.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o celeraCoverage.o -c celeraCoverage.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o celeraDupPositive.o -c celeraDupPositive.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cgapSage/cgapSage.o -c cgapSage/cgapSage.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cgapSage/cgapSageLib.o -c cgapSage/cgapSageLib.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cgh.o -c cgh.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o chainCart.o -c chainCart.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o chainDb.o -c chainDb.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o chainLink.o -c chainLink.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o chainNet.o -c chainNet.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o chainNetDbLoad.o -c chainNetDbLoad.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o chicken13kInfo.o -c chicken13kInfo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o chromBins.o -c chromBins.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o chr18deletions.o -c chr18deletions.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o chromGraph.o -c chromGraph.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o chromGraphFactory.o -c chromGraphFactory.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o chromInfo.o -c chromInfo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o chromInserts.o -c chromInserts.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o chromKeeper.o -c chromKeeper.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o clonePos.o -c clonePos.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o codeBlast.o -c codeBlast.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o codeBlastScore.o -c codeBlastScore.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cogs.o -c cogs.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cogsxra.o -c cogsxra.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o columnInfo.o -c columnInfo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o contigAcc.o -c contigAcc.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o coordConv.o -c coordConv.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cnpIafrate.o -c cnpIafrate.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cnpIafrate2.o -c cnpIafrate2.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cnpLocke.o -c cnpLocke.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cnpRedon.o -c cnpRedon.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cnpSebat.o -c cnpSebat.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cnpSebat2.o -c cnpSebat2.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cnpSharp2.o -c cnpSharp2.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cnpSharpCutoff.o -c cnpSharpCutoff.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cnpSharpSample.o -c cnpSharpSample.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cnpSharp.o -c cnpSharp.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cpgIsland.o -c cpgIsland.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cpgIslandExt.o -c cpgIslandExt.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ctgPos.o -c ctgPos.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ctgPos2.o -c ctgPos2.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o bedDetail.o -c bedDetail.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o customFactory.o -c customFactory.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o customPp.o -c customPp.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o customTrack.o -c customTrack.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cutter.o -c cutter.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cv.o -c cv.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cytoBand.o -c cytoBand.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o dbDb.o -c dbDb.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o dbRIP.o -c dbRIP.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o dbSnpRs.o -c dbSnpRs.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o defaultDb.o -c defaultDb.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o delConrad2.o -c delConrad2.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o delHinds2.o -c delHinds2.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o dgv.o -c dgv.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o dgvPlus.o -c dgvPlus.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o dless.o -c dless.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o dnaMotifSql.o -c dnaMotifSql.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o dnaMarkovSql.o -c dnaMarkovSql.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o dnaProbe.o -c dnaProbe.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o dv.o -c dv.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o dvBed.o -c dvBed.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o dvXref2.o -c dvXref2.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o easyGene.o -c easyGene.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ec.o -c ec.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ecCode.o -c ecCode.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ecAttribute.o -c ecAttribute.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ecAttributeCode.o -c ecAttributeCode.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/encodeErge.o -c encode/encodeErge.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/encodeErgeHssCellLines.o -c encode/encodeErgeHssCellLines.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/encodeHapMapAlleleFreq.o -c encode/encodeHapMapAlleleFreq.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/encodeIndels.o -c encode/encodeIndels.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/encodePeak.o -c encode/encodePeak.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/encodeRegionInfo.o -c encode/encodeRegionInfo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/encodeRegionInfoCustom.o -c encode/encodeRegionInfoCustom.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/encodeRna.o -c encode/encodeRna.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/encodeStanfordPromoters.o -c encode/encodeStanfordPromoters.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/encodeStanfordPromotersAverage.o -c encode/encodeStanfordPromotersAverage.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/pairedTagAlign.o -c encode/pairedTagAlign.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/peptideMapping.o -c encode/peptideMapping.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/tagAlign.o -c encode/tagAlign.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/wgEncodeGencodeAttrs.o -c encode/wgEncodeGencodeAttrs.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/wgEncodeGencodeExonSupport.o -c encode/wgEncodeGencodeExonSupport.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/wgEncodeGencodeTag.o -c encode/wgEncodeGencodeTag.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/wgEncodeGencodePdb.o -c encode/wgEncodeGencodePdb.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/wgEncodeGencodePubMed.o -c encode/wgEncodeGencodePubMed.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/wgEncodeGencodeRefSeq.o -c encode/wgEncodeGencodeRefSeq.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/wgEncodeGencodeGeneSource.o -c encode/wgEncodeGencodeGeneSource.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/wgEncodeGencodeTranscriptSource.o -c encode/wgEncodeGencodeTranscriptSource.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/wgEncodeGencodeTranscriptSupport.o -c encode/wgEncodeGencodeTranscriptSupport.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/wgEncodeGencodeTranscriptionSupportLevel.o -c encode/wgEncodeGencodeTranscriptionSupportLevel.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/wgEncodeGencodeUniProt.o -c encode/wgEncodeGencodeUniProt.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/wgEncodeGencodePolyAFeature.o -c encode/wgEncodeGencodePolyAFeature.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/wgEncodeGencodeAnnotationRemark.o -c encode/wgEncodeGencodeAnnotationRemark.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode/encodeExp.o -c encode/encodeExp.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode3/encode2Manifest.o -c encode3/encode2Manifest.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o encode3/encode3Valid.o -c encode3/encode3Valid.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ensFace.o -c ensFace.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ensInfo.o -c ensInfo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ensPhusionBlast.o -c ensPhusionBlast.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ensXRefZfish.o -c ensXRefZfish.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o est3.o -c est3.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o estOrientInfo.o -c estOrientInfo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o estPair.o -c estPair.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o exoFish.o -c exoFish.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o expData.o -c expData.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o expRecord.o -c expRecord.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o exprBed.o -c exprBed.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o factorSource.o -c factorSource.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o fbTables.o -c fbTables.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o featureBits.o -c featureBits.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o fileUi.o -c fileUi.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o findKGAlias.o -c findKGAlias.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o findKGProtAlias.o -c findKGProtAlias.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o fishClones.o -c fishClones.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o flyBase2004Xref.o -c flyBase2004Xref.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o flyBaseSwissProt.o -c flyBaseSwissProt.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o flyreg.o -c flyreg.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o flyreg2.o -c flyreg2.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o gbExtFile.o -c gbExtFile.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o gbWarn.o -c gbWarn.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o gbMiscDiff.o -c gbMiscDiff.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o gbProtAnn.o -c gbProtAnn.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o gcPercent.o -c gcPercent.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o gbSeq.o -c gbSeq.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o genbank.o -c genbank.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o genbankBlackList.o -c genbankBlackList.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o gencodeGeneClass.o -c gencodeGeneClass.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o gencodeIntron.o -c gencodeIntron.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o genMapDb.o -c genMapDb.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o geneBands.o -c geneBands.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o geneCheck.o -c geneCheck.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o geneCheckDetails.o -c geneCheckDetails.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o geneCheckWidget.o -c geneCheckWidget.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o geneGraph.o -c geneGraph.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o genePred.o -c genePred.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o genePredReader.o -c genePredReader.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o geneSimilarities.o -c geneSimilarities.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o genoLay.o -c genoLay.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o genomeRangeTreeFile.o -c genomeRangeTreeFile.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o genomicDups.o -c genomicDups.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o genomicSuperDups.o -c genomicSuperDups.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o geoMirror.o -c geoMirror.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ggCluster.o -c ggCluster.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ggDbIo.o -c ggDbIo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ggDump.o -c ggDump.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ggGraph.o -c ggGraph.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ggMrnaAli.o -c ggMrnaAli.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ggTypes.o -c ggTypes.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o glDbRep.o -c glDbRep.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o goa.o -c goa.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o goaPart.o -c goaPart.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o googleAnalytics.o -c googleAnalytics.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o gpFx.o -c gpFx.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o growthCondition.o -c growthCondition.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o grp.o -c grp.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o gwasCatalog.o -c gwasCatalog.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o haplotypes.o -c haplotypes.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o hapmapAllelesOrtho.o -c hapmapAllelesOrtho.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o hapmapAllelesSummary.o -c hapmapAllelesSummary.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o hapmapPhaseIIISummary.o -c hapmapPhaseIIISummary.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o hapmapSnps.o -c hapmapSnps.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o hapmapSnpsCombined.o -c hapmapSnpsCombined.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o hCommon.o -c hCommon.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o hCytoBand.o -c hCytoBand.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o hdb.o -c hdb.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o hgColors.o -c hgColors.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o hgConfig.o -c hgConfig.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o hgExp.o -c hgExp.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o hgFind.o -c hgFind.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o hgFindSpec.o -c hgFindSpec.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o hgFindSpecCustom.o -c hgFindSpecCustom.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o hgGene.o -c hgGene.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o hgMaf.o -c hgMaf.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o hgRelate.o -c hgRelate.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o hgSeq.o -c hgSeq.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o hgdpGeo.o -c hgdpGeo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o hPrint.o -c hPrint.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o hVarSubst.o -c hVarSubst.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o hvGfx.o -c hvGfx.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o HInv.o -c HInv.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o hubConnect.o -c hubConnect.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o hui.o -c hui.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o humanParalog.o -c humanParalog.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o imageClone.o -c imageClone.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o isochores.o -c isochores.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ispyTables.o -c ispyTables.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o itemAttr.o -c itemAttr.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o itemConf.o -c itemConf.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o itemDetailsHtml.o -c itemDetailsHtml.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o jalview.o -c jalview.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o jaxOrtholog.o -c jaxOrtholog.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o jaxQTL.o -c jaxQTL.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o jaxQTL3.o -c jaxQTL3.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o jksql.o -c jksql.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o joiner.o -c joiner.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o jsHelper.o -c jsHelper.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o kg1ToKg2.o -c kg1ToKg2.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o jgiGene.o -c jgiGene.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o kgAlias.o -c kgAlias.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o kgColor.o -c kgColor.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o kgProtAlias.o -c kgProtAlias.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o kgXref.o -c kgXref.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o knownInfo.o -c knownInfo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o knownMore.o -c knownMore.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o knownToSuper.o -c knownToSuper.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o lav.o -c lav.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ld.o -c ld.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ld2.o -c ld2.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o lfs.o -c lfs.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o liftOver.o -c liftOver.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o liftOverChain.o -c liftOverChain.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o liftUp.o -c liftUp.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o llaInfo.o -c llaInfo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o lrg.o -c lrg.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o lsSnpPdb.o -c lsSnpPdb.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o lsSnpPdbChimera.o -c lsSnpPdbChimera.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o mafFrames.o -c mafFrames.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o mafGene.o -c mafGene.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o mafSummary.o -c mafSummary.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o makeItemsItem.o -c makeItemsItem.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o mammalPsg.o -c mammalPsg.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o mapSts.o -c mapSts.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o mcnBreakpoints.o -c mcnBreakpoints.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o mdb.o -c mdb.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o metaChromGraph.o -c metaChromGraph.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o microarray.o -c microarray.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o minChromSize.o -c minChromSize.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o minGeneInfo.o -c minGeneInfo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o mrnaMisMatch.o -c mrnaMisMatch.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o mouseOrtho.o -c mouseOrtho.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o mouseSyn.o -c mouseSyn.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o mouseSynWhd.o -c mouseSynWhd.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o mysqlTableStatus.o -c mysqlTableStatus.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o netAlign.o -c netAlign.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o netCart.o -c netCart.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o nonCodingUi.o -c nonCodingUi.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o omimTitle.o -c omimTitle.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ooUtils.o -c ooUtils.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o orthoAlleles.o -c orthoAlleles.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o pal.o -c pal.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o pbStamp.o -c pbStamp.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o pcrResult.o -c pcrResult.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o pepPred.o -c pepPred.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o plasEndPairs.o -c plasEndPairs.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o polyGenotype.o -c polyGenotype.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o protFeat.o -c protFeat.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o pscreen.o -c pscreen.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o pseudoGeneLink.o -c pseudoGeneLink.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o pslReader.o -c pslReader.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o pslWScore.o -c pslWScore.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o putaInfo.o -c putaInfo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o qaSeq.o -c qaSeq.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o rangeTreeFile.o -c rangeTreeFile.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o rankProp.o -c rankProp.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o recombRate.o -c recombRate.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o recombRateRat.o -c recombRateRat.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o recombRateMouse.o -c recombRateMouse.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o refLink.o -c refLink.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o refSeqStatus.o -c refSeqStatus.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o rgdQtl.o -c rgdQtl.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o riken.o -c riken.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o rhMapZfishInfo.o -c rhMapZfishInfo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o rikenBest.o -c rikenBest.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o rikenCluster.o -c rikenCluster.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o rmskOut.o -c rmskOut.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o rmskAlign.o -c rmskAlign.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o rmskJoined.o -c rmskJoined.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o rmskOut2.o -c rmskOut2.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o rnaFold.o -c rnaFold.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o rnaGene.o -c rnaGene.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o rnaGroup.o -c rnaGroup.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o rnaHybridization.o -c rnaHybridization.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o rnaPLFold.o -c rnaPLFold.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o tRNAs.o -c tRNAs.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o gbRNAs.o -c gbRNAs.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o snoRNAs.o -c snoRNAs.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o lowelabPfamHit.o -c lowelabPfamHit.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o lowelabArkinOperonScore.o -c lowelabArkinOperonScore.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o lowelabTIGROperonScore.o -c lowelabTIGROperonScore.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o rnaSecStr.o -c rnaSecStr.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o tfbsConsFactors.o -c tfbsConsFactors.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o roughAli.o -c roughAli.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o transMapStuff.o -c transMapStuff.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o transMapInfo.o -c transMapInfo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o transMapGene.o -c transMapGene.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o transMapSrc.o -c transMapSrc.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o sage.o -c sage.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o sageCounts.o -c sageCounts.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o sageExp.o -c sageExp.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o samAlignment.o -c samAlignment.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o sample.o -c sample.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o sanger22extra.o -c sanger22extra.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o sangerGene.o -c sangerGene.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o sangerGeneToWBGeneID.o -c sangerGeneToWBGeneID.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o sargassoSeaXra.o -c sargassoSeaXra.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o scopDes.o -c scopDes.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o scoredRef.o -c scoredRef.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o search.o -c search.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o sgdAbundance.o -c sgdAbundance.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o sgdClone.o -c sgdClone.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o sgdDescription.o -c sgdDescription.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o sgdOther.o -c sgdOther.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o simpleNucDiff.o -c simpleNucDiff.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o simpleRepeat.o -c simpleRepeat.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o snakeUi.o -c snakeUi.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o snp.o -c snp.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o snp125.o -c snp125.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o snp125CodingCoordless.o -c snp125CodingCoordless.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o snp132Ext.o -c snp132Ext.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o snpExceptions.o -c snpExceptions.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o snpFasta.o -c snpFasta.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o snpMap.o -c snpMap.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o snpTmp.o -c snpTmp.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o snpUi.o -c snpUi.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o snp125Exceptions.o -c snp125Exceptions.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o snp125Ui.o -c snp125Ui.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o softPromoter.o -c softPromoter.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o softberryHom.o -c softberryHom.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o soTerm.o -c soTerm.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o spDb.o -c spDb.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o splignAlign.o -c splignAlign.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o stanMad.o -c stanMad.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o stsAlias.o -c stsAlias.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o stsInfo.o -c stsInfo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o stsInfo2.o -c stsInfo2.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o stsInfoMouse.o -c stsInfoMouse.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o stsInfoMouseNew.o -c stsInfoMouseNew.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o stsInfoRat.o -c stsInfoRat.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o stsMap.o -c stsMap.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o stsMapMouse.o -c stsMapMouse.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o stsMapMouseNew.o -c stsMapMouseNew.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o stsMapRat.o -c stsMapRat.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o stsMarker.o -c stsMarker.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o suggest.o -c suggest.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o switchDbTss.o -c switchDbTss.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o synMap.o -c synMap.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o synteny100000.o -c synteny100000.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o syntenyBerk.o -c syntenyBerk.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o syntenySanger.o -c syntenySanger.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o sqlProg.o -c sqlProg.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o tfbsCons.o -c tfbsCons.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o tfbsConsSites.o -c tfbsConsSites.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o tableDescriptions.o -c tableDescriptions.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o tableStatus.o -c tableStatus.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o targetDb.o -c targetDb.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o tfbsConsMap.o -c tfbsConsMap.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o taxonDivision.o -c taxonDivision.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o taxonGeneticCode.o -c taxonGeneticCode.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o taxonName.o -c taxonName.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o taxonNode.o -c taxonNode.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o taxonXref.o -c taxonXref.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o tigrCmrGene.o -c tigrCmrGene.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o tigrOperon.o -c tigrOperon.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o tilingPath.o -c tilingPath.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o traceInfo.o -c traceInfo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o trackDb.o -c trackDb.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o trackDbCustom.o -c trackDbCustom.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o trackHub.o -c trackHub.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o trackLayout.o -c trackLayout.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o trackTable.o -c trackTable.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o trackVersion.o -c trackVersion.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o trashDir.o -c trashDir.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o transRegCode.o -c transRegCode.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o transRegCodeCondition.o -c transRegCodeCondition.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o transRegCodeProbe.o -c transRegCodeProbe.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o txCluster.o -c txCluster.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o txCommon.o -c txCommon.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o txEdgeBed.o -c txEdgeBed.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o txEdgeOrtho.o -c txEdgeOrtho.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o txGraph.o -c txGraph.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o txInfo.o -c txInfo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o txRnaAccs.o -c txRnaAccs.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ucscRetroInfo.o -c ucscRetroInfo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ucscRetroOrtho.o -c ucscRetroOrtho.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o validateGisaid.o -c validateGisaid.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o variant.o -c variant.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o vcfUi.o -c vcfUi.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o vegaInfo.o -c vegaInfo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o vegaInfoZfish.o -c vegaInfoZfish.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o visiGene.o -c visiGene.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o vntr.o -c vntr.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o wabAli.o -c wabAli.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o web.o -c web.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o ncRna.o -c ncRna.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o wgRna.o -c wgRna.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o wigAsciiToBinary.o -c wigAsciiToBinary.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o wigDataStream.o -c wigDataStream.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o wiggle.o -c wiggle.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o wiggleCart.o -c wiggleCart.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o wiggleUtils.o -c wiggleUtils.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o wikiLink.o -c wikiLink.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o wikiTrack.o -c wikiTrack.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o yaleGencodeAssoc.o -c yaleGencodeAssoc.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o zdobnovSynt.o -c zdobnovSynt.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o oreganno.o -c oreganno.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o oregannoUi.o -c oregannoUi.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o gvUi.o -c gvUi.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o gv.o -c gv.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o omicia.o -c omicia.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o protVar.o -c protVar.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o pgSnp.o -c pgSnp.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o alignInfo.o -c alignInfo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cddInfo.o -c cddInfo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o loweutils.o -c loweutils.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o cddDesc.o -c cddDesc.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o arCOGs.o -c arCOGs.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o arcogdesc.o -c arcogdesc.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o geneTree.o -c geneTree.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o megablastInfo.o -c megablastInfo.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o pgPhenoAssoc.o -c pgPhenoAssoc.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o pgSiftPred.o -c pgSiftPred.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o pgPolyphenPred.o -c pgPolyphenPred.c
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -I/usr/include/mysql -o variome.o -c variome.c
ar rcus ../../lib/local/jkhgap.a acemblyClass.o affyAllExonProbe.o affyAtlas.o affy10KDetails.o affy120KDetails.o affyOffset.o affyPairs.o agp.o agpFrag.o agpGap.o alignSeqSizes.o altGraph.o altGraphX.o ancientRref.o annoFormatVep.o annoGratorGpVar.o annoGrateWigDb.o annoStreamDb.o annoStreamWig.o api.o atomDb.o axtInfo.o axtLib.o bactigPos.o hgBam.o baseMaskCommon.o bdgpExprLink.o bdgpGeneInfo.o bed.o bed5FloatScore.o bed5Pval.o bed6FloatScore.o bed8Attrs.o bed12Source.o bed12wSeq.o bedCart.o bgiGeneInfo.o bgiGeneSnp.o bgiSnp.o bioImage.o blastTab.o blastzNet.o blatServers.o borf.o borkPseudoHom.o botDelay.o cart.o cartDb.o cdsEvidence.o cdsOrtho.o cdsPick.o cdsSpec.o ccdsInfo.o ccdsNotes.o ccdsGeneMap.o celeraCoverage.o celeraDupPositive.o cgapSage/cgapSage.o cgapSage/cgapSageLib.o cgh.o chainCart.o chainDb.o chainLink.o chainNet.o chainNetDbLoad.o chicken13kInfo.o chromBins.o chr18deletions.o chromGraph.o chromGraphFactory.o chromInfo.o chromInserts.o chromKeeper.o clonePos.o codeBlast.o codeBlastScore.o cogs.o cogsxra.o columnInfo.o contigAcc.o coordConv.o cnpIafrate.o cnpIafrate2.o cnpLocke.o cnpRedon.o cnpSebat.o cnpSebat2.o cnpSharp2.o cnpSharpCutoff.o cnpSharpSample.o cnpSharp.o cpgIsland.o cpgIslandExt.o ctgPos.o ctgPos2.o bedDetail.o customFactory.o customPp.o customTrack.o cutter.o cv.o cytoBand.o dbDb.o dbRIP.o dbSnpRs.o defaultDb.o delConrad2.o delHinds2.o dgv.o dgvPlus.o dless.o dnaMotifSql.o dnaMarkovSql.o dnaProbe.o dv.o dvBed.o dvXref2.o easyGene.o ec.o ecCode.o ecAttribute.o ecAttributeCode.o encode/encodeErge.o encode/encodeErgeHssCellLines.o encode/encodeHapMapAlleleFreq.o encode/encodeIndels.o encode/encodePeak.o encode/encodeRegionInfo.o encode/encodeRegionInfoCustom.o encode/encodeRna.o encode/encodeStanfordPromoters.o encode/encodeStanfordPromotersAverage.o encode/pairedTagAlign.o encode/peptideMapping.o encode/tagAlign.o encode/wgEncodeGencodeAttrs.o encode/wgEncodeGencodeExonSupport.o encode/wgEncodeGencodeTag.o encode/wgEncodeGencodePdb.o encode/wgEncodeGencodePubMed.o encode/wgEncodeGencodeRefSeq.o encode/wgEncodeGencodeGeneSource.o encode/wgEncodeGencodeTranscriptSource.o encode/wgEncodeGencodeTranscriptSupport.o encode/wgEncodeGencodeTranscriptionSupportLevel.o encode/wgEncodeGencodeUniProt.o encode/wgEncodeGencodePolyAFeature.o encode/wgEncodeGencodeAnnotationRemark.o encode/encodeExp.o encode3/encode2Manifest.o encode3/encode3Valid.o ensFace.o ensInfo.o ensPhusionBlast.o ensXRefZfish.o est3.o estOrientInfo.o estPair.o exoFish.o expData.o expRecord.o exprBed.o factorSource.o fbTables.o featureBits.o fileUi.o findKGAlias.o findKGProtAlias.o fishClones.o flyBase2004Xref.o flyBaseSwissProt.o flyreg.o flyreg2.o gbExtFile.o gbWarn.o gbMiscDiff.o gbProtAnn.o gcPercent.o gbSeq.o genbank.o genbankBlackList.o gencodeGeneClass.o gencodeIntron.o genMapDb.o geneBands.o geneCheck.o geneCheckDetails.o geneCheckWidget.o geneGraph.o genePred.o genePredReader.o geneSimilarities.o genoLay.o genomeRangeTreeFile.o genomicDups.o genomicSuperDups.o geoMirror.o ggCluster.o ggDbIo.o ggDump.o ggGraph.o ggMrnaAli.o ggTypes.o glDbRep.o goa.o goaPart.o googleAnalytics.o gpFx.o growthCondition.o grp.o gwasCatalog.o haplotypes.o hapmapAllelesOrtho.o hapmapAllelesSummary.o hapmapPhaseIIISummary.o hapmapSnps.o hapmapSnpsCombined.o hCommon.o hCytoBand.o hdb.o hgColors.o hgConfig.o hgExp.o hgFind.o hgFindSpec.o hgFindSpecCustom.o hgGene.o hgMaf.o hgRelate.o hgSeq.o hgdpGeo.o hPrint.o hVarSubst.o hvGfx.o HInv.o hubConnect.o hui.o humanParalog.o imageClone.o isochores.o ispyTables.o itemAttr.o itemConf.o itemDetailsHtml.o jalview.o jaxOrtholog.o jaxQTL.o jaxQTL3.o jksql.o joiner.o jsHelper.o kg1ToKg2.o jgiGene.o kgAlias.o kgColor.o kgProtAlias.o kgXref.o knownInfo.o knownMore.o knownToSuper.o lav.o ld.o ld2.o lfs.o liftOver.o liftOverChain.o liftUp.o llaInfo.o lrg.o lsSnpPdb.o lsSnpPdbChimera.o mafFrames.o mafGene.o mafSummary.o makeItemsItem.o mammalPsg.o mapSts.o mcnBreakpoints.o mdb.o metaChromGraph.o microarray.o minChromSize.o minGeneInfo.o mrnaMisMatch.o mouseOrtho.o mouseSyn.o mouseSynWhd.o mysqlTableStatus.o netAlign.o netCart.o nonCodingUi.o omimTitle.o ooUtils.o orthoAlleles.o pal.o pbStamp.o pcrResult.o pepPred.o plasEndPairs.o polyGenotype.o protFeat.o pscreen.o pseudoGeneLink.o pslReader.o pslWScore.o putaInfo.o qaSeq.o rangeTreeFile.o rankProp.o recombRate.o recombRateRat.o recombRateMouse.o refLink.o refSeqStatus.o rgdQtl.o riken.o rhMapZfishInfo.o rikenBest.o rikenCluster.o rmskOut.o rmskAlign.o rmskJoined.o rmskOut2.o rnaFold.o rnaGene.o rnaGroup.o rnaHybridization.o rnaPLFold.o tRNAs.o gbRNAs.o snoRNAs.o lowelabPfamHit.o lowelabArkinOperonScore.o lowelabTIGROperonScore.o rnaSecStr.o tfbsConsFactors.o roughAli.o transMapStuff.o transMapInfo.o transMapGene.o transMapSrc.o sage.o sageCounts.o sageExp.o samAlignment.o sample.o sanger22extra.o sangerGene.o sangerGeneToWBGeneID.o sargassoSeaXra.o scopDes.o scoredRef.o search.o sgdAbundance.o sgdClone.o sgdDescription.o sgdOther.o simpleNucDiff.o simpleRepeat.o snakeUi.o snp.o snp125.o snp125CodingCoordless.o snp132Ext.o snpExceptions.o snpFasta.o snpMap.o snpTmp.o snpUi.o snp125Exceptions.o snp125Ui.o softPromoter.o softberryHom.o soTerm.o spDb.o splignAlign.o stanMad.o stsAlias.o stsInfo.o stsInfo2.o stsInfoMouse.o stsInfoMouseNew.o stsInfoRat.o stsMap.o stsMapMouse.o stsMapMouseNew.o stsMapRat.o stsMarker.o suggest.o switchDbTss.o synMap.o synteny100000.o syntenyBerk.o syntenySanger.o sqlProg.o tfbsCons.o tfbsConsSites.o tableDescriptions.o tableStatus.o targetDb.o tfbsConsMap.o taxonDivision.o taxonGeneticCode.o taxonName.o taxonNode.o taxonXref.o tigrCmrGene.o tigrOperon.o tilingPath.o traceInfo.o trackDb.o trackDbCustom.o trackHub.o trackLayout.o trackTable.o trackVersion.o trashDir.o transRegCode.o transRegCodeCondition.o transRegCodeProbe.o txCluster.o txCommon.o txEdgeBed.o txEdgeOrtho.o txGraph.o txInfo.o txRnaAccs.o ucscRetroInfo.o ucscRetroOrtho.o validateGisaid.o variant.o vcfUi.o vegaInfo.o vegaInfoZfish.o visiGene.o vntr.o wabAli.o web.o ncRna.o wgRna.o wigAsciiToBinary.o wigDataStream.o wiggle.o wiggleCart.o wiggleUtils.o wikiLink.o wikiTrack.o yaleGencodeAssoc.o zdobnovSynt.o oreganno.o oregannoUi.o gvUi.o gv.o omicia.o protVar.o pgSnp.o alignInfo.o cddInfo.o loweutils.o cddDesc.o arCOGs.o arcogdesc.o geneTree.o megablastInfo.o pgPhenoAssoc.o pgSiftPred.o pgPolyphenPred.o variome.o
make[2]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/hg/lib'
make[1]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src'
cd kent/src && make userApps
make[1]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src'
cd lib && make
make[2]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/lib'
ar rcus local/jkweb.a aliType.o annoAssembly.o annoFilter.o annoFormatter.o annoFormatTab.o annoGrator.o annoGrateWig.o annoGratorQuery.o annoOption.o annoRow.o annoStreamer.o annoStreamBigBed.o annoStreamBigWig.o annoStreamTab.o annoStreamVcf.o apacheLog.o asParse.o axt.o axtAffine.o bamFile.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o bwgValsOnChrom.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dyOut.o dystring.o elmTree.o emblParse.o errCatch.o errabort.o fa.o ffAli.o ffScore.o fieldedTable.o filePath.o fixColor.o flydna.o fof.o font/mgCourier10.o font/mgCourier12.o font/mgCourier14.o font/mgCourier18.o font/mgCourier24.o font/mgCourier34.o font/mgCourier8.o font/mgHelvetica10.o font/mgHelvetica12.o font/mgHelvetica14.o font/mgHelvetica18.o font/mgHelvetica24.o font/mgHelvetica34.o font/mgHelvetica8.o font/mgHelveticaBold10.o font/mgHelveticaBold12.o font/mgHelveticaBold14.o font/mgHelveticaBold18.o font/mgHelveticaBold24.o font/mgHelveticaBold34.o font/mgHelveticaBold8.o font/mgSixhi6.o font/mgSail8.o font/mgTimes10.o font/mgTimes12.o font/mgTimes14.o font/mgTimes18.o font/mgTimes24.o font/mgTimes34.o font/mgTimes8.o font/mgMenlo12.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o hacTree.o hash.o hex.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o hmac.o https.o intExp.o intValTree.o internet.o itsa.o iupac.o jointalign.o jpegSize.o jsonParse.o keys.o knetUdc.o kxTok.o linefile.o lineFileOnBigBed.o localmem.o log.o maf.o mafFromAxt.o mafScore.o mailViaPipe.o md5.o memalloc.o memgfx.o meta.o metaWig.o mgCircle.o mgPolygon.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o paraFetch.o peakCluster.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rainbow.o raToStruct.o rbTree.o rangeTree.o regexHelper.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vcf.o vcfBits.o vGfx.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o
make[2]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/lib'
cd jkOwnLib && make
make[2]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/jkOwnLib'
ar rcus ../lib/local/jkOwnLib.a bandExt.o crudeali.o ffAliHelp.o ffSeedExtend.o fuzzyFind.o genoFind.o gfBlatLib.o gfClientLib.o gfInternal.o gfOut.o gfPcrLib.o gfWebLib.o ooc.o patSpace.o splix.o supStitch.o trans3.o xenbig.o xensmall.o
make[2]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/jkOwnLib'
cd hg/lib && make
make[2]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/hg/lib'
make[2]: `../../lib/local/jkhgap.a' is up to date.
make[2]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/hg/lib'
mkdir -p /home/bst/student/lcollado/software/userApps//bin
cd utils/stringify && echo utils/stringify && make
utils/stringify
make[2]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/stringify'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o stringify.o -c stringify.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/stringify stringify.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lm
true /home/bst/student/lcollado/software/userApps/bin/stringify
make[2]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/stringify'
cd utils && echo utils && make userAppsB
utils
make[2]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils'
cd addCols && echo addCols && make
addCols
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/addCols'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o addCols.o -c addCols.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/addCols addCols.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/addCols
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/addCols'
cd ave && echo ave && make
ave
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/ave'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o ave.o -c ave.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/ave ave.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lm
true /home/bst/student/lcollado/software/userApps/bin/ave
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/ave'
cd aveCols && echo aveCols && make
aveCols
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/aveCols'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o aveCols.o -c aveCols.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/aveCols aveCols.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/aveCols
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/aveCols'
cd bedClip && echo bedClip && make
bedClip
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bedClip'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bedClip.o -c bedClip.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/bedClip bedClip.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/bedClip
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bedClip'
cd bedGraphToBigWig && echo bedGraphToBigWig && make
bedGraphToBigWig
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bedGraphToBigWig'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bedGraphToBigWig.o -c bedGraphToBigWig.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/bedGraphToBigWig bedGraphToBigWig.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/bedGraphToBigWig
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bedGraphToBigWig'
cd bedToBigBed && echo bedToBigBed && make
bedToBigBed
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bedToBigBed'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bedToBigBed.o -c bedToBigBed.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/bedToBigBed bedToBigBed.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/bedToBigBed
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bedToBigBed'
cd bigBedInfo && echo bigBedInfo && make
bigBedInfo
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bigBedInfo'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bigBedInfo.o -c bigBedInfo.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/bigBedInfo bigBedInfo.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/bigBedInfo
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bigBedInfo'
cd bigBedNamedItems && echo bigBedNamedItems && make
bigBedNamedItems
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bigBedNamedItems'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bigBedNamedItems.o -c bigBedNamedItems.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/bigBedNamedItems bigBedNamedItems.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/bigBedNamedItems
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bigBedNamedItems'
cd bigBedSummary && echo bigBedSummary && make
bigBedSummary
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bigBedSummary'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bigBedSummary.o -c bigBedSummary.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/bigBedSummary bigBedSummary.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/bigBedSummary
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bigBedSummary'
cd bigBedToBed && echo bigBedToBed && make
bigBedToBed
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bigBedToBed'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bigBedToBed.o -c bigBedToBed.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/bigBedToBed bigBedToBed.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/bigBedToBed
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bigBedToBed'
cd bedCommonRegions && echo bedCommonRegions && make
bedCommonRegions
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bedCommonRegions'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bedCommonRegions.o -c bedCommonRegions.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/bedCommonRegions bedCommonRegions.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lm
true /home/bst/student/lcollado/software/userApps/bin/bedCommonRegions
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bedCommonRegions'
cd bedGeneParts && echo bedGeneParts && make
bedGeneParts
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bedGeneParts'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bedGeneParts.o -c bedGeneParts.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/bedGeneParts bedGeneParts.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lm
true /home/bst/student/lcollado/software/userApps/bin/bedGeneParts
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bedGeneParts'
cd bedGraphPack && echo bedGraphPack && make
bedGraphPack
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bedGraphPack'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bedGraphPack.o -c bedGraphPack.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/bedGraphPack bedGraphPack.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/bedGraphPack
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bedGraphPack'
cd bedPileUps && echo bedPileUps && make
bedPileUps
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bedPileUps'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bedPileUps.o -c bedPileUps.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/bedPileUps bedPileUps.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/bedPileUps
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bedPileUps'
cd bedRemoveOverlap && echo bedRemoveOverlap && make
bedRemoveOverlap
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bedRemoveOverlap'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bedRemoveOverlap.o -c bedRemoveOverlap.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/bedRemoveOverlap bedRemoveOverlap.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/bedRemoveOverlap
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bedRemoveOverlap'
cd bedRestrictToPositions && echo bedRestrictToPositions && make
bedRestrictToPositions
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bedRestrictToPositions'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bedRestrictToPositions.o -c bedRestrictToPositions.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/bedRestrictToPositions bedRestrictToPositions.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lm
true /home/bst/student/lcollado/software/userApps/bin/bedRestrictToPositions
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bedRestrictToPositions'
cd bigWigAverageOverBed && echo bigWigAverageOverBed && make
bigWigAverageOverBed
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bigWigAverageOverBed'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bigWigAverageOverBed.o -c bigWigAverageOverBed.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/bigWigAverageOverBed bigWigAverageOverBed.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/bigWigAverageOverBed
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bigWigAverageOverBed'
cd bigWigCat && echo bigWigCat && make
bigWigCat
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bigWigCat'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bigWigCat.o -c bigWigCat.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/bigWigCat bigWigCat.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/bigWigCat
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bigWigCat'
cd bigWigCorrelate && echo bigWigCorrelate && make
bigWigCorrelate
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bigWigCorrelate'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bigWigCorrelate.o -c bigWigCorrelate.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/bigWigCorrelate bigWigCorrelate.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/bigWigCorrelate
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bigWigCorrelate'
cd bigWigInfo && echo bigWigInfo && make
bigWigInfo
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bigWigInfo'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bigWigInfo.o -c bigWigInfo.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/bigWigInfo bigWigInfo.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/bigWigInfo
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bigWigInfo'
cd bigWigMerge && echo bigWigMerge && make
bigWigMerge
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bigWigMerge'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bigWigMerge.o -c bigWigMerge.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/bigWigMerge bigWigMerge.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/bigWigMerge
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bigWigMerge'
cd bigWigSummary && echo bigWigSummary && make
bigWigSummary
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bigWigSummary'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bigWigSummary.o -c bigWigSummary.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/bigWigSummary bigWigSummary.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/bigWigSummary
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bigWigSummary'
cd bigWigToBedGraph && echo bigWigToBedGraph && make
bigWigToBedGraph
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bigWigToBedGraph'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bigWigToBedGraph.o -c bigWigToBedGraph.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/bigWigToBedGraph bigWigToBedGraph.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/bigWigToBedGraph
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bigWigToBedGraph'
cd bigWigToWig && echo bigWigToWig && make
bigWigToWig
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bigWigToWig'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o bigWigToWig.o -c bigWigToWig.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/bigWigToWig bigWigToWig.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/bigWigToWig
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/bigWigToWig'
cd calc && echo calc && make
calc
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/calc'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o calc.o -c calc.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/calc calc.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lm
true /home/bst/student/lcollado/software/userApps/bin/calc
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/calc'
cd catDir && echo catDir && make
catDir
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/catDir'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o catDir.o -c catDir.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/catDir catDir.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lm
true /home/bst/student/lcollado/software/userApps/bin/catDir
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/catDir'
cd catUncomment && echo catUncomment && make
catUncomment
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/catUncomment'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o catUncomment.o -c catUncomment.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/catUncomment catUncomment.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/catUncomment
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/catUncomment'
cd chopFaLines && echo chopFaLines && make
chopFaLines
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/chopFaLines'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o chopFaLines.o -c chopFaLines.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/chopFaLines chopFaLines.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/chopFaLines
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/chopFaLines'
cd colTransform && echo colTransform && make
colTransform
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/colTransform'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o colTransform.o -c colTransform.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/colTransform colTransform.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lm
true /home/bst/student/lcollado/software/userApps/bin/colTransform
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/colTransform'
cd countChars && echo countChars && make
countChars
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/countChars'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o countChars.o -c countChars.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/countChars countChars.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/countChars
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/countChars'
cd fastqToFa && echo fastqToFa && make
fastqToFa
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/fastqToFa'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o fastqToFa.o -c fastqToFa.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/fastqToFa fastqToFa.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lm
true /home/bst/student/lcollado/software/userApps/bin/fastqToFa
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/fastqToFa'
cd faCmp && echo faCmp && make
faCmp
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faCmp'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o faCmp.o -c faCmp.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/faCmp faCmp.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lm
true /home/bst/student/lcollado/software/userApps/bin/faCmp
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faCmp'
cd faCount && echo faCount && make
faCount
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faCount'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o faCount.o -c faCount.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/faCount faCount.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lm
true /home/bst/student/lcollado/software/userApps/bin/faCount
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faCount'
cd faFilterN && echo faFilterN && make
faFilterN
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faFilterN'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o faFilterN.o -c faFilterN.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/faFilterN faFilterN.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lm
true /home/bst/student/lcollado/software/userApps/bin/faFilterN
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faFilterN'
cd faFilter && echo faFilter && make
faFilter
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faFilter'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o faFilter.o -c faFilter.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/faFilter faFilter.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lm
true /home/bst/student/lcollado/software/userApps/bin/faFilter
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faFilter'
cd faFrag && echo faFrag && make
faFrag
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faFrag'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o faFrag.o -c faFrag.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/faFrag faFrag.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lm
true /home/bst/student/lcollado/software/userApps/bin/faFrag
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faFrag'
cd faNoise && echo faNoise && make
faNoise
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faNoise'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o faNoise.o -c faNoise.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/faNoise faNoise.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/faNoise
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faNoise'
cd faOneRecord && echo faOneRecord && make
faOneRecord
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faOneRecord'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o faOneRecord.o -c faOneRecord.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/faOneRecord faOneRecord.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/faOneRecord
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faOneRecord'
cd faPolyASizes && echo faPolyASizes && make
faPolyASizes
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faPolyASizes'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o faPolyASizes.o -c faPolyASizes.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/faPolyASizes faPolyASizes.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lm
true /home/bst/student/lcollado/software/userApps/bin/faPolyASizes
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faPolyASizes'
cd faRandomize && echo faRandomize && make
faRandomize
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faRandomize'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o faRandomize.o -c faRandomize.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/faRandomize faRandomize.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/faRandomize
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faRandomize'
cd faRc && echo faRc && make
faRc
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faRc'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o faRc.o -c faRc.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/faRc faRc.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lm
true /home/bst/student/lcollado/software/userApps/bin/faRc
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faRc'
cd faSize && echo faSize && make
faSize
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faSize'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o faSize.o -c faSize.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/faSize faSize.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lm
true /home/bst/student/lcollado/software/userApps/bin/faSize
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faSize'
cd faSomeRecords && echo faSomeRecords && make
faSomeRecords
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faSomeRecords'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o faSomeRecords.o -c faSomeRecords.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/faSomeRecords faSomeRecords.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lm
true /home/bst/student/lcollado/software/userApps/bin/faSomeRecords
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faSomeRecords'
cd faSplit && echo faSplit && make
faSplit
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faSplit'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o faSplit.o -c faSplit.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/faSplit faSplit.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm
true /home/bst/student/lcollado/software/userApps/bin/faSplit
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faSplit'
cd faToFastq && echo faToFastq && make
faToFastq
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faToFastq'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o faToFastq.o -c faToFastq.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/faToFastq faToFastq.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lm
true /home/bst/student/lcollado/software/userApps/bin/faToFastq
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faToFastq'
cd faToTab && echo faToTab && make
faToTab
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faToTab'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o faToTab.o -c faToTab.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/faToTab faToTab.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lm
true /home/bst/student/lcollado/software/userApps/bin/faToTab
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faToTab'
cd faToTwoBit && echo faToTwoBit && make
faToTwoBit
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faToTwoBit'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o faToTwoBit.o -c faToTwoBit.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/faToTwoBit faToTwoBit.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lm
true /home/bst/student/lcollado/software/userApps/bin/faToTwoBit
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faToTwoBit'
cd faTrans && echo faTrans && make
faTrans
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faTrans'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o faTrans.o -c faTrans.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/faTrans faTrans.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lm
true /home/bst/student/lcollado/software/userApps/bin/faTrans
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/faTrans'
cd findMotif && echo findMotif && make
findMotif
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/findMotif'
gcc -O -g -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_local -DUSE_SSL -DCOLOR32 -DUSE_SAMTABIX -DUSE_BAM -DUSE_TABIX -DKNETFILE_HOOKS -Wall -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/include -I/home/bst/student/lcollado/software/userApps/samtabix -o findMotif.o -c findMotif.c
gcc -O -g -o /home/bst/student/lcollado/software/userApps/bin/findMotif findMotif.o ../../lib/local/jkweb.a -rdynamic -L/usr/lib64/mysql -lmysqlclient -lz -lcrypt -lnsl -lm -L/usr/lib64 -lssl -lcrypto -lstdc++ -lrt -lm -pthread -L/lib -lssl -lcrypto /usr/lib64/libpng.a /home/bst/student/lcollado/software/userApps/samtabix/libsamtabix.a -lz -lm -lm
true /home/bst/student/lcollado/software/userApps/bin/findMotif
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/findMotif'
cd gitTools && echo gitTools && make
gitTools
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/gitTools'
chmod a+rx gitFiles
rm -f /home/bst/student/lcollado/software/userApps/scripts/gitFiles
cp -pf gitFiles /home/bst/student/lcollado/software/userApps/scripts/gitFiles
cp: preserving permissions for `/home/bst/student/lcollado/software/userApps/scripts/gitFiles': Operation not supported
cp: preserving ACL for `/home/bst/student/lcollado/software/userApps/scripts/gitFiles': Operation not supported
make[3]: *** [/home/bst/student/lcollado/software/userApps/scripts/gitFiles] Error 1
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils/gitTools'
make[2]: *** [gitTools.userApps] Error 2
make[2]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src/utils'
make[1]: *** [userApps] Error 2
make[1]: Leaving directory `/home/bst/student/lcollado/software/userApps/kent/src'
make: *** [utils] Error 2
21:41 userApps $ export KENT_SRC=$PWD/kent/src
21:42 userApps $ echo ${KENT_SRC}
/home/bst/student/lcollado/software/userApps/kent/src
21:42 userApps $ git clone https://github.com/samtools/tabix.git
Initialized empty Git repository in /home/bst/student/lcollado/software/userApps/tabix/.git/
remote: Reusing existing pack: 391, done.
remote: Total 391 (delta 0), reused 0 (delta 0)
Receiving objects: 100% (391/391), 145.00 KiB, done.
Resolving deltas: 100% (227/227), done.
21:42 userApps $ export TABIX_SRC=$PWD/tabix
21:42 userApps $ echo ${TABIX_SRC}
/home/bst/student/lcollado/software/userApps/tabix
21:43 userApps $ cd tabix
21:43 tabix $ make
make[1]: Entering directory `/home/bst/student/lcollado/software/userApps/tabix'
gcc -c -g -Wall -O2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzf.c -o bgzf.o
gcc -c -g -Wall -O2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE kstring.c -o kstring.o
gcc -c -g -Wall -O2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE knetfile.c -o knetfile.o
gcc -c -g -Wall -O2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE index.c -o index.o
gcc -c -g -Wall -O2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bedidx.c -o bedidx.o
ar -csru libtabix.a bgzf.o kstring.o knetfile.o index.o bedidx.o
gcc -c -g -Wall -O2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE main.c -o main.o
gcc -g -Wall -O2 -fPIC -o tabix main.o -L. -ltabix -lm -lz
gcc -c -g -Wall -O2 -fPIC -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -DBGZF_CACHE bgzip.c -o bgzip.o
gcc -g -Wall -O2 -fPIC -o bgzip bgzip.o bgzf.o knetfile.o -lz
make[1]: Leaving directory `/home/bst/student/lcollado/software/userApps/tabix'
21:43 tabix $ cd ..
21:43 userApps $ git clone git@github.com:Ensembl/WiggleTools.git
Initialized empty Git repository in /home/bst/student/lcollado/software/userApps/WiggleTools/.git/
remote: Reusing existing pack: 1284, done.
remote: Total 1284 (delta 0), reused 0 (delta 0)
Receiving objects: 100% (1284/1284), 2.33 MiB, done.
Resolving deltas: 100% (742/742), done.
21:43 userApps $ cd wiggletools
-bash: cd: wiggletools: No such file or directory
21:43 userApps $ cd WiggleTools/
21:43 WiggleTools $ make
cd samtools; make
make[1]: Entering directory `/home/bst/student/lcollado/software/userApps/WiggleTools/samtools'
make[2]: Entering directory `/home/bst/student/lcollado/software/userApps/WiggleTools/samtools'
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/WiggleTools/samtools'
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -DBGZF_CACHE -I. bgzf.c -o bgzf.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. kstring.c -o kstring.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_aux.c -o bam_aux.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam.c -o bam.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_import.c -o bam_import.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. sam.c -o sam.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_index.c -o bam_index.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_pileup.c -o bam_pileup.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_lpileup.c -o bam_lpileup.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_md.c -o bam_md.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. razf.c -o razf.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. faidx.c -o faidx.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bedidx.c -o bedidx.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. knetfile.c -o knetfile.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_sort.c -o bam_sort.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. sam_header.c -o sam_header.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_reheader.c -o bam_reheader.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. kprobaln.c -o kprobaln.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_cat.c -o bam_cat.o
ar -csru libbam.a bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o bam_pileup.o bam_lpileup.o bam_md.o razf.o faidx.o bedidx.o knetfile.o bam_sort.o sam_header.o bam_reheader.o kprobaln.o bam_cat.o
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/WiggleTools/samtools'
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/WiggleTools/samtools/bcftools'
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. bcf.c -o bcf.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. vcf.c -o vcf.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. bcfutils.c -o bcfutils.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. prob1.c -o prob1.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. em.c -o em.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. kfunc.c -o kfunc.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. kmin.c -o kmin.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. index.c -o index.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. fet.c -o fet.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. mut.c -o mut.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. bcf2qcall.c -o bcf2qcall.o
ar -csru libbcf.a bcf.o vcf.o bcfutils.o prob1.o em.o kfunc.o kmin.o index.o fet.o mut.o bcf2qcall.o
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/WiggleTools/samtools/bcftools'
make[3]: Entering directory `/home/bst/student/lcollado/software/userApps/WiggleTools/samtools/misc'
make[3]: Nothing to be done for `lib'.
make[3]: Leaving directory `/home/bst/student/lcollado/software/userApps/WiggleTools/samtools/misc'
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_tview.c -o bam_tview.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_plcmd.c -o bam_plcmd.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. sam_view.c -o sam_view.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_rmdup.c -o bam_rmdup.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_rmdupse.c -o bam_rmdupse.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_mate.c -o bam_mate.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_stat.c -o bam_stat.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_color.c -o bam_color.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bamtk.c -o bamtk.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. kaln.c -o kaln.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam2bcf.c -o bam2bcf.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam2bcf_indel.c -o bam2bcf_indel.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. errmod.c -o errmod.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. sample.c -o sample.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. cut_target.c -o cut_target.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. phase.c -o phase.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam2depth.c -o bam2depth.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. padding.c -o padding.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bedcov.c -o bedcov.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bamshuf.c -o bamshuf.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_tview_curses.c -o bam_tview_curses.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. bam_tview_html.c -o bam_tview_html.o
gcc -g -Wall -O2 -o samtools bam_tview.o bam_plcmd.o sam_view.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o cut_target.o phase.o bam2depth.o padding.o bedcov.o bamshuf.o bam_tview_curses.o bam_tview_html.o libbam.a -Lbcftools -lbcf -lcurses -lm -lz -lpthread
make[2]: Leaving directory `/home/bst/student/lcollado/software/userApps/WiggleTools/samtools'
make[2]: Entering directory `/home/bst/student/lcollado/software/userApps/WiggleTools/samtools/bcftools'
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. call1.c -o call1.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I.. -I. main.c -o main.o
gcc -g -Wall -O2 -o bcftools call1.o main.o ../kstring.o ../bgzf.o ../knetfile.o ../bedidx.o -L. -lbcf -lm -lz -lpthread
make[2]: Leaving directory `/home/bst/student/lcollado/software/userApps/WiggleTools/samtools/bcftools'
make[2]: Entering directory `/home/bst/student/lcollado/software/userApps/WiggleTools/samtools/misc'
gcc -c -g -Wall -O2 -DMD5SUM_MAIN -o md5sum-lite.o md5.c
gcc -g -Wall -O2 -o md5sum-lite md5sum-lite.o
gcc -c -g -Wall -O2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1 -I. md5.c -o md5.o
gcc -g -Wall -O2 -c -I.. -o md5fa.o md5fa.c
gcc -g -Wall -O2 -o md5fa md5.o md5fa.o -lz
gcc -g -Wall -O2 -o maq2sam-short maq2sam.c -lz
gcc -g -Wall -O2 -DMAQ_LONGREADS -o maq2sam-long maq2sam.c -lz
gcc -g -Wall -O2 -c -I.. -o ace2sam.o ace2sam.c
gcc -g -Wall -O2 -o ace2sam ace2sam.o -lz
gcc -g -Wall -O2 -c -I.. -o wgsim.o wgsim.c
gcc -g -Wall -O2 -o wgsim wgsim.o -lm -lz
gcc -g -Wall -O2 -c -I.. -o bamcheck.o bamcheck.c
gcc -g -Wall -O2 -o bamcheck bamcheck.o -L.. -lm -lbam -lpthread -lz
make[2]: Leaving directory `/home/bst/student/lcollado/software/userApps/WiggleTools/samtools/misc'
make[1]: Leaving directory `/home/bst/student/lcollado/software/userApps/WiggleTools/samtools'
cd src; make
make[1]: Entering directory `/home/bst/student/lcollado/software/userApps/WiggleTools/src'
cc -g -Wall -O3 -I../samtools -I/home/bst/student/lcollado/software/userApps/kent/src/inc -I../../tabix -D_PBGZF_USE -c wiggleIterator.c -o wiggleIterator.o
cc -g -Wall -O3 -I../samtools -I/home/bst/student/lcollado/software/userApps/kent/src/inc -I../../tabix -D_PBGZF_USE -c wigReader.c -o wigReader.o
wigReader.c: In function 'WiggleReaderSeek':
wigReader.c:209: warning: assignment discards qualifiers from pointer target type
cc -g -Wall -O3 -I../samtools -I/home/bst/student/lcollado/software/userApps/kent/src/inc -I../../tabix -D_PBGZF_USE -c bigWiggleReader.c -o bigWiggleReader.o
bigWiggleReader.c: In function 'readBigWigBuffer':
bigWiggleReader.c:20: warning: 'finish' may be used uninitialized in this function
bigWiggleReader.c:20: warning: 'start' may be used uninitialized in this function
cc -g -Wall -O3 -I../samtools -I/home/bst/student/lcollado/software/userApps/kent/src/inc -I../../tabix -D_PBGZF_USE -c multiplexer.c -o multiplexer.o
cc -g -Wall -O3 -I../samtools -I/home/bst/student/lcollado/software/userApps/kent/src/inc -I../../tabix -D_PBGZF_USE -c reducers.c -o reducers.o
cc -g -Wall -O3 -I../samtools -I/home/bst/student/lcollado/software/userApps/kent/src/inc -I../../tabix -D_PBGZF_USE -c bedReader.c -o bedReader.o
bedReader.c: In function 'BedReaderSeek':
bedReader.c:77: warning: assignment discards qualifiers from pointer target type
cc -g -Wall -O3 -I../samtools -I/home/bst/student/lcollado/software/userApps/kent/src/inc -I../../tabix -D_PBGZF_USE -c bigBedReader.c -o bigBedReader.o
cc -g -Wall -O3 -I../samtools -I/home/bst/student/lcollado/software/userApps/kent/src/inc -I../../tabix -D_PBGZF_USE -c bamReader.c -o bamReader.o
bamReader.c: In function 'seekRegion':
bamReader.c:131: warning: dereferencing type-punned pointer will break strict-aliasing rules
bamReader.c: In function 'BamReaderSeek':
bamReader.c:192: warning: assignment discards qualifiers from pointer target type
cc -g -Wall -O3 -I../samtools -I/home/bst/student/lcollado/software/userApps/kent/src/inc -I../../tabix -D_PBGZF_USE -c apply.c -o apply.o
cc -g -Wall -O3 -I../samtools -I/home/bst/student/lcollado/software/userApps/kent/src/inc -I../../tabix -D_PBGZF_USE -c bigFileReader.c -o bigFileReader.o
bigFileReader.c: In function 'BigFileReaderSeek':
bigFileReader.c:121: warning: assignment discards qualifiers from pointer target type
cc -g -Wall -O3 -I../samtools -I/home/bst/student/lcollado/software/userApps/kent/src/inc -I../../tabix -D_PBGZF_USE -c commandParser.c -o commandParser.o
cc -g -Wall -O3 -I../samtools -I/home/bst/student/lcollado/software/userApps/kent/src/inc -I../../tabix -D_PBGZF_USE -c wigWriter.c -o wigWriter.o
cc -g -Wall -O3 -I../samtools -I/home/bst/student/lcollado/software/userApps/kent/src/inc -I../../tabix -D_PBGZF_USE -c statistics.c -o statistics.o
cc -g -Wall -O3 -I../samtools -I/home/bst/student/lcollado/software/userApps/kent/src/inc -I../../tabix -D_PBGZF_USE -c unaryOps.c -o unaryOps.o
cc -g -Wall -O3 -I../samtools -I/home/bst/student/lcollado/software/userApps/kent/src/inc -I../../tabix -D_PBGZF_USE -c multiSet.c -o multiSet.o
cc -g -Wall -O3 -I../samtools -I/home/bst/student/lcollado/software/userApps/kent/src/inc -I../../tabix -D_PBGZF_USE -c setComparisons.c -o setComparisons.o
cc -g -Wall -O3 -I../samtools -I/home/bst/student/lcollado/software/userApps/kent/src/inc -I../../tabix -D_PBGZF_USE -c bufferedReader.c -o bufferedReader.o
bufferedReader.c: In function 'createBlockData':
bufferedReader.c:60: warning: assignment from incompatible pointer type
cc -g -Wall -O3 -I../samtools -I/home/bst/student/lcollado/software/userApps/kent/src/inc -I../../tabix -D_PBGZF_USE -c vcfReader.c -o vcfReader.o
vcfReader.c: In function 'VcfReaderSeek':
vcfReader.c:70: warning: assignment discards qualifiers from pointer target type
cc -g -Wall -O3 -I../samtools -I/home/bst/student/lcollado/software/userApps/kent/src/inc -I../../tabix -D_PBGZF_USE -c bcfReader.c -o bcfReader.o
bcfReader.c: In function 'nextLine':
bcfReader.c:42: warning: return discards qualifiers from pointer target type
bcfReader.c: In function 'BcfReaderSeek':
bcfReader.c:104: warning: assignment discards qualifiers from pointer target type
cc -g -Wall -O3 -I../samtools -I/home/bst/student/lcollado/software/userApps/kent/src/inc -I../../tabix -D_PBGZF_USE -c plots.c -o plots.o
plots.c: In function 'updateProfile':
plots.c:31: warning: implicit declaration of function 'round'
plots.c:31: warning: incompatible implicit declaration of built-in function 'round'
plots.c:34: warning: incompatible implicit declaration of built-in function 'round'
mkdir -p ../lib
ar rcs ../lib/libwiggletools.a *.o ../samtools/bam_plcmd.o ../samtools/sample.o ../samtools/bam2bcf.o ../samtools/errmod.o ../samtools/bam2bcf_indel.o
cc -g -Wall -O3 -I../samtools -I/home/bst/student/lcollado/software/userApps/kent/src/inc -I../../tabix -D_PBGZF_USE -c wiggletools.c -o wiggletools.o
mkdir -p ../bin
cc -g -Wall -O3 -L/home/bst/student/lcollado/software/userApps/kent/src/lib/ -L../samtools -L../samtools/bcftools -L../lib -L../../tabix wiggletools.c -static ../lib/libwiggletools.a /home/bst/student/lcollado/software/userApps/kent/src/lib/local/jkweb.a -lbam -lbcf -lz -lpthread -lssl -lcrypto -ldl -lgsl -lm -ltabix -o ../bin/wiggletools
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libcrypto.a(fips.o): In function `FIPSCHECK_verify':
(.text+0x7fa): warning: Using 'dlopen' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking
/home/bst/student/lcollado/software/userApps/kent/src/lib/local/jkweb.a(osunix.o): In function `getUser':
/home/bst/student/lcollado/software/userApps/kent/src/lib/osunix.c:524: warning: Using 'getpwuid' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking
/home/bst/student/lcollado/software/userApps/kent/src/lib/local/jkweb.a(internet.o): In function `internetHostIp':
/home/bst/student/lcollado/software/userApps/kent/src/lib/internet.c:44: warning: Using 'getaddrinfo' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libcrypto.a(b_sock.o): In function `BIO_gethostbyname':
(.text+0x211): warning: Using 'gethostbyname' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libcrypto.a(b_sock.o): In function `BIO_get_port':
(.text+0x4cd): warning: Using 'getservbyname' in statically linked applications requires at runtime the shared libraries from the glibc version used for linking
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `get_rc_clockskew':
(.text+0xbe): undefined reference to `krb5_rc_default'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `get_rc_clockskew':
(.text+0xd0): undefined reference to `krb5_rc_initialize'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `get_rc_clockskew':
(.text+0xf0): undefined reference to `krb5_rc_get_lifespan'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `get_rc_clockskew':
(.text+0x10a): undefined reference to `krb5_rc_destroy'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_validate_times':
(.text+0x13c): undefined reference to `krb5_init_context'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_validate_times':
(.text+0x159): undefined reference to `krb5_timeofday'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_validate_times':
(.text+0x185): undefined reference to `krb5_free_context'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_tgt_is_available':
(.text+0x269): undefined reference to `krb5_init_context'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_tgt_is_available':
(.text+0x286): undefined reference to `krb5_free_principal'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_tgt_is_available':
(.text+0x29d): undefined reference to `krb5_free_principal'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_tgt_is_available':
(.text+0x2af): undefined reference to `krb5_free_context'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_tgt_is_available':
(.text+0x2e8): undefined reference to `krb5_sname_to_principal'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_tgt_is_available':
(.text+0x301): undefined reference to `krb5_cc_default'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_tgt_is_available':
(.text+0x323): undefined reference to `krb5_cc_get_principal'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_tgt_is_available':
(.text+0x34f): undefined reference to `krb5_get_credentials'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_keytab_is_available':
(.text+0x39c): undefined reference to `krb5_init_context'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_keytab_is_available':
(.text+0x3b8): undefined reference to `krb5_kt_resolve'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_keytab_is_available':
(.text+0x3d2): undefined reference to `krb5_kt_close'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_keytab_is_available':
(.text+0x3e6): undefined reference to `krb5_free_principal'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_keytab_is_available':
(.text+0x3f5): undefined reference to `krb5_free_context'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_keytab_is_available':
(.text+0x40d): undefined reference to `krb5_kt_default'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_keytab_is_available':
(.text+0x43e): undefined reference to `krb5_sname_to_principal'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_keytab_is_available':
(.text+0x45a): undefined reference to `krb5_kt_get_entry'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_keytab_is_available':
(.text+0x47a): undefined reference to `krb5_kt_free_entry'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `populate_cksumlens':
(.text+0x8db): undefined reference to `valid_cksumtype'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `populate_cksumlens':
(.text+0x8fe): undefined reference to `krb5_checksum_size'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `populate_cksumlens':
(.text+0x93d): undefined reference to `krb5_checksum_size'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_cget_tkt':
(.text+0x13d5): undefined reference to `krb5_init_context'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_cget_tkt':
(.text+0x140b): undefined reference to `krb5_sname_to_principal'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_cget_tkt':
(.text+0x1459): undefined reference to `krb5_free_principal'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_cget_tkt':
(.text+0x1470): undefined reference to `krb5_free_principal'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_cget_tkt':
(.text+0x148a): undefined reference to `krb5_auth_con_free'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_cget_tkt':
(.text+0x149c): undefined reference to `krb5_free_context'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_cget_tkt':
(.text+0x14f1): undefined reference to `krb5_cc_default'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_cget_tkt':
(.text+0x1511): undefined reference to `krb5_cc_get_principal'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_cget_tkt':
(.text+0x1597): undefined reference to `krb5_get_credentials'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_cget_tkt':
(.text+0x162e): undefined reference to `krb5_mk_req_extended'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_sget_tkt':
(.text+0x1988): undefined reference to `krb5_auth_con_free'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_sget_tkt':
(.text+0x19b0): undefined reference to `krb5_auth_con_init'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_sget_tkt':
(.text+0x19e4): undefined reference to `krb5_kt_close'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_sget_tkt':
(.text+0x19fa): undefined reference to `krb5_free_ticket'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_sget_tkt':
(.text+0x1a10): undefined reference to `krb5_free_principal'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_sget_tkt':
(.text+0x1a5c): undefined reference to `krb5_auth_con_getrcache'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_sget_tkt':
(.text+0x1a90): undefined reference to `krb5_sname_to_principal'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_sget_tkt':
(.text+0x1abe): undefined reference to `krb5_auth_con_setrcache'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_sget_tkt':
(.text+0x1ae7): undefined reference to `krb5_kt_resolve'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_sget_tkt':
(.text+0x1b51): undefined reference to `krb5_principal_compare'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_sget_tkt':
(.text+0x1bf4): undefined reference to `krb5_init_context'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_sget_tkt':
(.text+0x1c38): undefined reference to `krb5_get_server_rcache'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_sget_tkt':
(.text+0x1cc9): undefined reference to `krb5_kt_default'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_sget_tkt':
(.text+0x1d10): undefined reference to `krb5_kt_get_entry'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_sget_tkt':
(.text+0x1d74): undefined reference to `krb5_decrypt_tkt_part'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_sget_tkt':
(.text+0x1dac): undefined reference to `krb5_kt_free_entry'
/usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../lib64/libssl.a(kssl.o): In function `kssl_krb5_free_data_contents':
(.text+0x203): undefined reference to `krb5_free_data_contents'
collect2: ld returned 1 exit status
make[1]: *** [../bin/wiggletools] Error 1
make[1]: Leaving directory `/home/bst/student/lcollado/software/userApps/WiggleTools/src'
make: *** [Wiggletools] Error 2
21:44 WiggleTools $
21:49 WiggleTools $ make test
cd test; python test.py
Testing: ../bin/wiggletools isZero diff fixedStep.bw variableStep.wig
/bin/sh: ../bin/wiggletools: No such file or directory
Traceback (most recent call last):
File "test.py", line 14, in <module>
assert test('../bin/wiggletools isZero diff fixedStep.bw variableStep.wig') == 1
AssertionError
make: *** [tests] Error 1
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