Lucas Czech lczech
💮
Postdoc in bioinformatics 🌱 and computer scientist 
working on inter-disciplinary ways to save the planet 🌍
working on inter-disciplinary ways to save the planet 🌍
lczech
/ merge_jplace_files.cpp
Created
September 15, 2017 14:39
Merge jplace files, even if their reference trees have different branch lengths, using genesis v0.16.0 (https://github.com/lczech/genesis).
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| /* | |
| Genesis - A toolkit for working with phylogenetic data. | |
| Copyright (C) 2014-2017 Lucas Czech | |
| This program is free software: you can redistribute it and/or modify | |
| it under the terms of the GNU General Public License as published by | |
| the Free Software Foundation, either version 3 of the License, or | |
| (at your option) any later version. | |
| This program is distributed in the hope that it will be useful, |
lczech
/ placement_classification_table.cpp
Last active
September 30, 2016 06:25
Write all placements of a jplace file into a list, including the closted leaf name of the tree, using genesis v0.11.0 (https://github.com/lczech/genesis).
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| /* | |
| Genesis - A toolkit for working with phylogenetic data. | |
| Copyright (C) 2014-2016 Lucas Czech | |
| This program is free software: you can redistribute it and/or modify | |
| it under the terms of the GNU General Public License as published by | |
| the Free Software Foundation, either version 3 of the License, or | |
| (at your option) any later version. | |
| This program is distributed in the hope that it will be useful, |
lczech
/ extract_branch_placements.cpp
Last active
June 25, 2016 23:21
Extract lists of pquery names per branch of the reference tree, using genesis v0.7.0 (https://github.com/lczech/genesis).
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Learn more about bidirectional Unicode characters
| /* | |
| Genesis - A toolkit for working with phylogenetic data. | |
| Copyright (C) 2014-2016 Lucas Czech | |
| This program is free software: you can redistribute it and/or modify | |
| it under the terms of the GNU General Public License as published by | |
| the Free Software Foundation, either version 3 of the License, or | |
| (at your option) any later version. | |
| This program is distributed in the hope that it will be useful, |