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leanderme/MedExUIMACPE.log

Last active August 27, 2016 19:39
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MedEx Error log
Raw
MedExUIMACPE.log
Loading configuration files ...
Aug 27, 2016 8:22:11 PM org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl callAnalysisComponentProcess(407)
SEVERE: Exception occurred
org.apache.uima.analysis_engine.AnalysisEngineProcessException
at org.apache.uima.analysis_engine.impl.compatibility.CasConsumerAdapter.process(CasConsumerAdapter.java:101)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:375)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:296)
at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(AnalysisEngineImplBase.java:267)
at org.apache.uima.collection.impl.cpm.engine.ProcessingUnit.processNext(ProcessingUnit.java:897)
at org.apache.uima.collection.impl.cpm.engine.ProcessingUnit.run(ProcessingUnit.java:577)
Caused by: org.apache.uima.resource.ResourceProcessException
at org.apache.UIMA.CPE.medex.UIMAMedexConsumer.processCas(UIMAMedexConsumer.java:96)
at org.apache.uima.analysis_engine.impl.compatibility.CasConsumerAdapter.process(CasConsumerAdapter.java:99)
... 5 more
Caused by: org.xml.sax.SAXParseException; Trying to serialize non-XML 1.0 character: , 0x0
at org.apache.uima.util.XMLSerializer$CharacterValidatingContentHandler.checkForInvalidXmlChars(XMLSerializer.java:254)
at org.apache.uima.util.XMLSerializer$CharacterValidatingContentHandler.startElement(XMLSerializer.java:174)
at org.apache.uima.cas.impl.XmiCasSerializer$XmiCasDocSerializer.startElement(XmiCasSerializer.java:1003)
at org.apache.uima.cas.impl.XmiCasSerializer$XmiCasDocSerializer.encodeFS(XmiCasSerializer.java:755)
at org.apache.uima.cas.impl.XmiCasSerializer$XmiCasDocSerializer.encodeIndexed(XmiCasSerializer.java:700)
at org.apache.uima.cas.impl.XmiCasSerializer$XmiCasDocSerializer.serialize(XmiCasSerializer.java:268)
at org.apache.uima.cas.impl.XmiCasSerializer$XmiCasDocSerializer.access$700(XmiCasSerializer.java:108)
at org.apache.uima.cas.impl.XmiCasSerializer.serialize(XmiCasSerializer.java:1516)
at org.apache.uima.cas.impl.XmiCasSerializer.serialize(XmiCasSerializer.java:1496)
at org.apache.UIMA.CPE.medex.UIMAMedexConsumer.writeXmi(UIMAMedexConsumer.java:109)
at org.apache.UIMA.CPE.medex.UIMAMedexConsumer.processCas(UIMAMedexConsumer.java:92)
... 6 more
org.apache.uima.analysis_engine.AnalysisEngineProcessException
at org.apache.uima.analysis_engine.impl.compatibility.CasConsumerAdapter.process(CasConsumerAdapter.java:101)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:375)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:296)
at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(AnalysisEngineImplBase.java:267)
at org.apache.uima.collection.impl.cpm.engine.ProcessingUnit.processNext(ProcessingUnit.java:897)
at org.apache.uima.collection.impl.cpm.engine.ProcessingUnit.run(ProcessingUnit.java:577)
Caused by: org.apache.uima.resource.ResourceProcessException
at org.apache.UIMA.CPE.medex.UIMAMedexConsumer.processCas(UIMAMedexConsumer.java:96)
at org.apache.uima.analysis_engine.impl.compatibility.CasConsumerAdapter.process(CasConsumerAdapter.java:99)
... 5 more
Caused by: org.xml.sax.SAXParseException; Trying to serialize non-XML 1.0 character: , 0x0
at org.apache.uima.util.XMLSerializer$CharacterValidatingContentHandler.checkForInvalidXmlChars(XMLSerializer.java:254)
at org.apache.uima.util.XMLSerializer$CharacterValidatingContentHandler.startElement(XMLSerializer.java:174)
at org.apache.uima.cas.impl.XmiCasSerializer$XmiCasDocSerializer.startElement(XmiCasSerializer.java:1003)
at org.apache.uima.cas.impl.XmiCasSerializer$XmiCasDocSerializer.encodeFS(XmiCasSerializer.java:755)
at org.apache.uima.cas.impl.XmiCasSerializer$XmiCasDocSerializer.encodeIndexed(XmiCasSerializer.java:700)
at org.apache.uima.cas.impl.XmiCasSerializer$XmiCasDocSerializer.serialize(XmiCasSerializer.java:268)
at org.apache.uima.cas.impl.XmiCasSerializer$XmiCasDocSerializer.access$700(XmiCasSerializer.java:108)
at org.apache.uima.cas.impl.XmiCasSerializer.serialize(XmiCasSerializer.java:1516)
at org.apache.uima.cas.impl.XmiCasSerializer.serialize(XmiCasSerializer.java:1496)
at org.apache.UIMA.CPE.medex.UIMAMedexConsumer.writeXmi(UIMAMedexConsumer.java:109)
at org.apache.UIMA.CPE.medex.UIMAMedexConsumer.processCas(UIMAMedexConsumer.java:92)
... 6 more
Aug 27, 2016 8:22:12 PM org.apache.uima.collection.impl.cpm.engine.ProcessingUnit process
SEVERE: The container UIMAMedexConsumerDescriptor returned the following error message: null (Thread Name: [Procesing Pipeline#1 Thread]::)
Aug 27, 2016 8:22:12 PM org.apache.uima.collection.impl.cpm.engine.ProcessingUnit maybeLogSevereException(2502)
SEVERE: Thread: [Procesing Pipeline#1 Thread]::, message: null
org.apache.uima.analysis_engine.AnalysisEngineProcessException
at org.apache.uima.analysis_engine.impl.compatibility.CasConsumerAdapter.process(CasConsumerAdapter.java:101)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.callAnalysisComponentProcess(PrimitiveAnalysisEngine_impl.java:375)
at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl.processAndOutputNewCASes(PrimitiveAnalysisEngine_impl.java:296)
at org.apache.uima.analysis_engine.impl.AnalysisEngineImplBase.process(AnalysisEngineImplBase.java:267)
at org.apache.uima.collection.impl.cpm.engine.ProcessingUnit.processNext(ProcessingUnit.java:897)
at org.apache.uima.collection.impl.cpm.engine.ProcessingUnit.run(ProcessingUnit.java:577)
Caused by: org.apache.uima.resource.ResourceProcessException
at org.apache.UIMA.CPE.medex.UIMAMedexConsumer.processCas(UIMAMedexConsumer.java:96)
at org.apache.uima.analysis_engine.impl.compatibility.CasConsumerAdapter.process(CasConsumerAdapter.java:99)
... 5 more
Caused by: org.xml.sax.SAXParseException; Trying to serialize non-XML 1.0 character: , 0x0
at org.apache.uima.util.XMLSerializer$CharacterValidatingContentHandler.checkForInvalidXmlChars(XMLSerializer.java:254)
at org.apache.uima.util.XMLSerializer$CharacterValidatingContentHandler.startElement(XMLSerializer.java:174)
at org.apache.uima.cas.impl.XmiCasSerializer$XmiCasDocSerializer.startElement(XmiCasSerializer.java:1003)
at org.apache.uima.cas.impl.XmiCasSerializer$XmiCasDocSerializer.encodeFS(XmiCasSerializer.java:755)
at org.apache.uima.cas.impl.XmiCasSerializer$XmiCasDocSerializer.encodeIndexed(XmiCasSerializer.java:700)
at org.apache.uima.cas.impl.XmiCasSerializer$XmiCasDocSerializer.serialize(XmiCasSerializer.java:268)
at org.apache.uima.cas.impl.XmiCasSerializer$XmiCasDocSerializer.access$700(XmiCasSerializer.java:108)
at org.apache.uima.cas.impl.XmiCasSerializer.serialize(XmiCasSerializer.java:1516)
at org.apache.uima.cas.impl.XmiCasSerializer.serialize(XmiCasSerializer.java:1496)
at org.apache.UIMA.CPE.medex.UIMAMedexConsumer.writeXmi(UIMAMedexConsumer.java:109)
at org.apache.UIMA.CPE.medex.UIMAMedexConsumer.processCas(UIMAMedexConsumer.java:92)
... 6 more
Aug 27, 2016 8:22:12 PM org.apache.uima.collection.impl.cpm.container.ProcessingContainer_Impl process
SEVERE: The CPM stopped because the configured error threshold 0 was exceeded. (Thread Name: [Procesing Pipeline#1 Thread]::) Component Name: UIMAMedexConsumerDescriptor
Aug 27, 2016 8:22:12 PM org.apache.uima.collection.impl.cpm.engine.ProcessingUnit process
SEVERE: The CPM is terminating. The current component is UIMAMedexConsumerDescriptor. (Thread Name: [Procesing Pipeline#1 Thread]::)
Aug 27, 2016 8:22:12 PM org.apache.uima.collection.impl.cpm.engine.ProcessingUnit process
WARNING: The CPM cannot be stopped by force. The current container is UIMAMedexConsumerDescriptor. (Thread Name: [Procesing Pipeline#1 Thread]::) Reason: The CAS processor UIMAMedexConsumerDescriptor is configured to stop the CPM when excessive errors are encountered. (Thread Name: [Procesing Pipeline#1 Thread]::)
Aug 27, 2016 8:22:12 PM org.apache.uima.collection.impl.cpm.engine.ProcessingUnit maybeLogSevereException(2502)
SEVERE: Thread: [Procesing Pipeline#1 Thread]::, message:
org.apache.uima.collection.base_cpm.AbortCPMException:
at org.apache.uima.collection.impl.cpm.container.ProcessingContainer_Impl.incrementCasProcessorErrors(ProcessingContainer_Impl.java:804)
at org.apache.uima.collection.impl.cpm.engine.ProcessingUnit.processNext(ProcessingUnit.java:1041)
at org.apache.uima.collection.impl.cpm.engine.ProcessingUnit.run(ProcessingUnit.java:577)
Aug 27, 2016 8:22:12 PM org.apache.uima.collection.impl.cpm.engine.CPMEngine process
INFO: The collection reader thread state is: 1004 (Thread Name: [Procesing Pipeline#1 Thread]::)
Aug 27, 2016 8:22:12 PM org.apache.uima.collection.impl.cpm.engine.CPMEngine process
INFO: The CPM processing unit is 0 and processing state 2003. (Thread Name: [Procesing Pipeline#1 Thread]::)
Aug 27, 2016 8:22:12 PM org.apache.uima.collection.impl.cpm.engine.CPMEngine process
INFO: The application stopped the CPM. (Thread Name: [Procesing Pipeline#1 Thread]::)
Aug 27, 2016 8:22:12 PM org.apache.uima.collection.impl.cpm.engine.CPMEngine process
INFO: The CPM engine is stopping. An end-of-file token is added to the worker queue. (Thread Name: [Procesing Pipeline#1 Thread]::) Forced stop: true
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