Skip to content

Instantly share code, notes, and snippets.

@lee212
Created July 12, 2013 18:30
Show Gist options
  • Save lee212/f1449352334a2268b849 to your computer and use it in GitHub Desktop.
Save lee212/f1449352334a2268b849 to your computer and use it in GitHub Desktop.
{
"a_galaxy_workflow": "true",
"annotation": "",
"format-version": "0.1",
"name": "Workflow constructed from history 'imported: Galaxy 101'",
"steps": {
"0": {
"annotation": "",
"id": 0,
"input_connections": {},
"inputs": [
{
"description": "",
"name": "Input Dataset"
}
],
"name": "Input dataset",
"outputs": [],
"position": {
"left": 10,
"top": 10
},
"tool_errors": null,
"tool_id": null,
"tool_state": "{\"name\": \"Input Dataset\"}",
"tool_version": null,
"type": "data_input",
"user_outputs": []
},
"1": {
"annotation": "",
"id": 1,
"input_connections": {},
"inputs": [
{
"description": "",
"name": "Input Dataset"
}
],
"name": "Input dataset",
"outputs": [],
"position": {
"left": 10,
"top": 130
},
"tool_errors": null,
"tool_id": null,
"tool_state": "{\"name\": \"Input Dataset\"}",
"tool_version": null,
"type": "data_input",
"user_outputs": []
},
"2": {
"annotation": "",
"id": 2,
"input_connections": {
"input1": {
"id": 0,
"output_name": "output"
},
"input2": {
"id": 1,
"output_name": "output"
}
},
"inputs": [],
"name": "Join",
"outputs": [
{
"name": "output",
"type": "interval"
}
],
"position": {
"left": 230,
"top": 10
},
"post_job_actions": {},
"tool_errors": null,
"tool_id": "gops_join_1",
"tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"input1\": \"null\", \"min\": \"\\\"1\\\"\", \"chromInfo\": \"\\\"/galaxy/home/g2main/galaxy_main/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"fill\": \"\\\"none\\\"\"}",
"tool_version": null,
"type": "tool",
"user_outputs": []
},
"3": {
"annotation": "",
"id": 3,
"input_connections": {
"input1": {
"id": 2,
"output_name": "output"
}
},
"inputs": [],
"name": "Group",
"outputs": [
{
"name": "out_file1",
"type": "tabular"
}
],
"position": {
"left": 450,
"top": 10
},
"post_job_actions": {},
"tool_errors": null,
"tool_id": "Grouping1",
"tool_state": "{\"operations\": \"[{\\\"opcol\\\": {\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"4\\\"}, \\\"__index__\\\": 0, \\\"optype\\\": \\\"length\\\", \\\"opround\\\": \\\"no\\\"}]\", \"__page__\": 0, \"input1\": \"null\", \"groupcol\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"4\\\"}\", \"ignorecase\": \"\\\"False\\\"\", \"chromInfo\": \"\\\"/galaxy/home/g2main/galaxy_main/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}",
"tool_version": null,
"type": "tool",
"user_outputs": []
},
"4": {
"annotation": "",
"id": 4,
"input_connections": {
"input": {
"id": 3,
"output_name": "out_file1"
}
},
"inputs": [],
"name": "Sort",
"outputs": [
{
"name": "out_file1",
"type": "input"
}
],
"position": {
"left": 670,
"top": 10
},
"post_job_actions": {},
"tool_errors": null,
"tool_id": "sort1",
"tool_state": "{\"__page__\": 0, \"style\": \"\\\"num\\\"\", \"column\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"2\\\"}\", \"order\": \"\\\"DESC\\\"\", \"input\": \"null\", \"chromInfo\": \"\\\"/galaxy/home/g2main/galaxy_main/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"column_set\": \"[]\"}",
"tool_version": null,
"type": "tool",
"user_outputs": []
},
"5": {
"annotation": "",
"id": 5,
"input_connections": {
"input": {
"id": 4,
"output_name": "out_file1"
}
},
"inputs": [],
"name": "Select first",
"outputs": [
{
"name": "out_file1",
"type": "input"
}
],
"position": {
"left": 890,
"top": 10
},
"post_job_actions": {},
"tool_errors": null,
"tool_id": "Show beginning1",
"tool_state": "{\"__page__\": 0, \"input\": \"null\", \"chromInfo\": \"\\\"/galaxy/home/g2main/galaxy_main/tool-data/shared/ucsc/chrom/hg19.len\\\"\", \"lineNum\": \"\\\"5\\\"\"}",
"tool_version": null,
"type": "tool",
"user_outputs": []
},
"6": {
"annotation": "",
"id": 6,
"input_connections": {
"input1": {
"id": 0,
"output_name": "output"
},
"input2": {
"id": 5,
"output_name": "out_file1"
}
},
"inputs": [],
"name": "Compare two Datasets",
"outputs": [
{
"name": "out_file1",
"type": "input"
}
],
"position": {
"left": 1110,
"top": 10
},
"post_job_actions": {},
"tool_errors": null,
"tool_id": "comp1",
"tool_state": "{\"input2\": \"null\", \"__page__\": 0, \"input1\": \"null\", \"field2\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"1\\\"}\", \"field1\": \"{\\\"__class__\\\": \\\"UnvalidatedValue\\\", \\\"value\\\": \\\"4\\\"}\", \"mode\": \"\\\"N\\\"\", \"chromInfo\": \"\\\"/galaxy/home/g2main/galaxy_main/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}",
"tool_version": null,
"type": "tool",
"user_outputs": []
},
"7": {
"annotation": "",
"id": 7,
"input_connections": {
"input1": {
"id": 6,
"output_name": "out_file1"
}
},
"inputs": [],
"name": "Convert Genomic Intervals To Strict BED",
"outputs": [
{
"name": "output1",
"type": "bedstrict"
}
],
"position": {
"left": 1330,
"top": 10
},
"post_job_actions": {},
"tool_errors": null,
"tool_id": "CONVERTER_interval_to_bedstrict_0",
"tool_state": "{\"__page__\": 0, \"input1\": \"null\", \"chromInfo\": \"\\\"/galaxy/home/g2main/galaxy_main/tool-data/shared/ucsc/chrom/hg19.len\\\"\"}",
"tool_version": null,
"type": "tool",
"user_outputs": []
}
}
}
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment