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/ gatk_bundle_and_WGS_test_data.sh
Created
April 1, 2019 15:33
— forked from ShujiaHuang/gatk_bundle_and_WGS_test_data.sh
Common datasets for GATK
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| #Known datasets: GATK bundle for human b37 reference | |
| # | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/b37/dbsnp_138.b37.vcf.gz.md5 | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/b37/dbsnp_138.b37.vcf.gz | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/b37/Mills_and_1000G_gold_standard.indels.b37.vcf.gz | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/b37/Mills_and_1000G_gold_standard.indels.b37.vcf.gz.md5 | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/b37/1000G_phase1.indels.b37.vcf.gz | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/b37/1000G_phase1.indels.b37.vcf.gz.md5 | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/b37/1000G_phase1.snps.high_confidence.b37.vcf.gz | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/b37/1000G_phase1.snps.high_confidence.b37.vcf.gz.md5 |
ShujiaHuang
/ gatk_bundle_and_WGS_test_data.sh
Last active
April 13, 2024 02:16
Common datasets for GATK
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| #Known datasets: GATK bundle for human b37 reference | |
| # | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/b37/dbsnp_138.b37.vcf.gz.md5 | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/b37/dbsnp_138.b37.vcf.gz | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/b37/Mills_and_1000G_gold_standard.indels.b37.vcf.gz | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/b37/Mills_and_1000G_gold_standard.indels.b37.vcf.gz.md5 | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/b37/1000G_phase1.indels.b37.vcf.gz | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/b37/1000G_phase1.indels.b37.vcf.gz.md5 | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/b37/1000G_phase1.snps.high_confidence.b37.vcf.gz | |
| wget -c ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/b37/1000G_phase1.snps.high_confidence.b37.vcf.gz.md5 |