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leinlawun/gist:189158e16b6f53e1f368d55fc07b0584

Last active June 26, 2020 16:09
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RocketJoe log
Raw
gistfile1.txt
rocketjoe_jupyter_1 | UpdateCTestConfiguration from :/app/build/DartConfiguration.tcl
rocketjoe_jupyter_1 | UpdateCTestConfiguration from :/app/build/DartConfiguration.tcl
rocketjoe_jupyter_1 | Test project /app/build
rocketjoe_jupyter_1 | Constructing a list of tests
rocketjoe_jupyter_1 | Done constructing a list of tests
rocketjoe_jupyter_1 | Updating test list for fixtures
rocketjoe_jupyter_1 | Added 0 tests to meet fixture requirements
rocketjoe_jupyter_1 | Checking test dependency graph...
rocketjoe_jupyter_1 | Checking test dependency graph end
rocketjoe_jupyter_1 | test 1
rocketjoe_jupyter_1 | Start 1: test_storage
rocketjoe_jupyter_1 | Could not find executable test_storage
rocketjoe_jupyter_1 | Looked in the following places:
rocketjoe_jupyter_1 | test_storage
rocketjoe_jupyter_1 | test_storage
rocketjoe_jupyter_1 | Release/test_storage
rocketjoe_jupyter_1 | Release/test_storage
rocketjoe_jupyter_1 | Debug/test_storage
rocketjoe_jupyter_1 | Debug/test_storage
rocketjoe_jupyter_1 | MinSizeRel/test_storage
rocketjoe_jupyter_1 | MinSizeRel/test_storage
rocketjoe_jupyter_1 | RelWithDebInfo/test_storage
rocketjoe_jupyter_1 | RelWithDebInfo/test_storage
rocketjoe_jupyter_1 | Deployment/test_storage
rocketjoe_jupyter_1 | Deployment/test_storage
rocketjoe_jupyter_1 | Development/test_storage
rocketjoe_jupyter_1 | Development/test_storage
rocketjoe_jupyter_1 |
rocketjoe_jupyter_1 | 1: Test command:
rocketjoe_jupyter_1 | Unable to find executable: test_storage
rocketjoe_jupyter_1 | 1/2 Test #1: test_storage .....................***Not Run 0.00 sec
rocketjoe_jupyter_1 | test 2
rocketjoe_jupyter_1 | Start 2: test_jupyter_kernel.py
rocketjoe_jupyter_1 |
rocketjoe_jupyter_1 | 2: Test command: /usr/local/bin/pytest "/app/build/apps/rocketjoed/test/test_jupyter_kernel.py"
rocketjoe_jupyter_1 | 2: Environment variables:
rocketjoe_jupyter_1 | 2: JUPYTER_PATH=$JUPYTER_PATH:/app/build
rocketjoe_jupyter_1 | 2: Test timeout computed to be: 10000000
rocketjoe_jupyter_1 | 2: ============================= test session starts ==============================
rocketjoe_jupyter_1 | 2: platform linux -- Python 3.7.3, pytest-5.4.2, py-1.8.2, pluggy-0.13.1
rocketjoe_jupyter_1 | 2: benchmark: 3.2.3 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000)
rocketjoe_jupyter_1 | 2: rootdir: /app/build/apps/rocketjoed
rocketjoe_jupyter_1 | 2: plugins: benchmark-3.2.3, xprocess-0.13.1
rocketjoe_jupyter_1 | 2: collected 26 items
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py EEEEEEEEEEEE.F.F.F.F.F.F.F [100%]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: ==================================== ERRORS ====================================
rocketjoe_jupyter_1 | 2: ___________ ERROR at setup of RocketJoePythonTests.test_clear_output ___________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7f1e41a46ba8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: ---------------------------- Captured stdout setup -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 12:13:45.447] [__default__] [info] [pid 14 tid 14]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 12:13:45.447] [__default__] [info] [pid 14 tid 14] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /tmp/tmpjymcb2wv.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:13:45.447] [__default__] [info] [pid 14 tid 14] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 12:13:45.447] [__default__] [info] [pid 14 tid 14] construct process pool
rocketjoe_jupyter_1 | 2: [2020-06-25 12:13:45.473] [__default__] [info] [pid 14 tid 14] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 12:13:45.473] [__default__] [info] [pid 14 tid 14] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 12:13:45.473] [__default__] [info] [pid 14 tid 14] jupyter connection path : /tmp/tmpjymcb2wv.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:13:45.473] [__default__] [info] [pid 14 tid 14] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 12:13:46.916] [__default__] [info] [pid 14 tid 14] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ---------------------------- Captured stderr setup -----------------------------
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=14)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002b0 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x179dc97)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002b0 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 unsigned short const& boost::any_cast<unsigned short const&>(boost::any const&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/any.hpp:298 (rocketjoed+0x15a0285)
rocketjoe_jupyter_1 | 2: #3 unsigned short const& boost::program_options::variable_value::as<unsigned short>() const /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/program_options/variables_map.hpp:69 (rocketjoed+0x15a0285)
rocketjoe_jupyter_1 | 2: #4 main ../apps/rocketjoed/main.cpp:102 (rocketjoed+0x15a0285)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x55f027398b80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=21, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=14)
rocketjoe_jupyter_1 | 2: Read of size 1 at 0x7b0800001010 by main thread:
rocketjoe_jupyter_1 | 2: #0 strncpy <null> (libtsan.so.0+0x2b783)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0x81f63)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:27 (rocketjoed+0x1cd82ca)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x19bc2f3)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x15a95da)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0800001010 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1798ca6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Location is heap block of size 20 at 0x7b0800001000 allocated by thread T1:
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1798ca6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x55f027398b80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=21, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2b783) in strncpy
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=14)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000810 by main thread:
rocketjoe_jupyter_1 | 2: #0 open64 <null> (libtsan.so.0+0x2de81)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0xdf106)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:34 (rocketjoed+0x1cd8569)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x19bc2f3)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x15a95da)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000810 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x179dc97)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x55f027398b80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=21, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2de81) in __interceptor_open64
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 38497,
rocketjoe_jupyter_1 | 2: "hb_port": 55791,
rocketjoe_jupyter_1 | 2: "iopub_port": 39661,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "kernel_name": "rocketjoe",
rocketjoe_jupyter_1 | 2: "key": "4bae36f7-ffdb438a87ca66c30032d41f",
rocketjoe_jupyter_1 | 2: "shell_port": 45019,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 54331,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=14)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000330 by thread T8:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 boost::asio::detail::reactive_socket_move_accept_op<boost::asio::ip::tcp, boost::asio::strand<boost::asio::io_context::executor_type>, boost::beast::detail::bind_front_wrapper<void (goblin_engineer::components::http_server::listener::*)(boost::system::error_code, boost::asio::basic_stream_socket<boost::asio::ip::tcp, boost::asio::executor>), std::shared_ptr<goblin_engineer::components::http_server::listener> >, boost::asio::detail::io_object_executor<boost::asio::executor> >::reactive_socket_move_accept_op(boost::asio::strand<boost::asio::io_context::executor_type> const&, int, unsigned char, boost::asio::ip::tcp const&, boost::asio::ip::basic_endpoint<boost::asio::ip::tcp>*, boost::beast::detail::bind_front_wrapper<void (goblin_engineer::components::http_server::listener::*)(boost::system::error_code, boost::asio::basic_stream_socket<boost::asio::ip::tcp, boost::asio::executor>), std::shared_ptr<goblin_engineer::components::http_server::listener> >&, boost::asio::detail::io_object_executor<boost::asio::executor> const&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/detail/reactive_socket_accept_op.hpp:172 (rocketjoed+0x181c0e7)
rocketjoe_jupyter_1 | 2: #3 boost::asio::detail::scheduler_operation::complete(void*, boost::system::error_code const&, unsigned long) <null> (rocketjoed+0x17f8245)
rocketjoe_jupyter_1 | 2: #4 boost::asio::io_context::run() /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/impl/io_context.ipp:63 (rocketjoed+0x17f9eae)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000330 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:30 (rocketjoed+0x15a9a25)
rocketjoe_jupyter_1 | 2: #3 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T8 (tid=30, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:29 (rocketjoed+0x15a9a17)
rocketjoe_jupyter_1 | 2: #3 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ____________ ERROR at setup of RocketJoePythonTests.test_completion ____________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7f1e41a46ba8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: ___________ ERROR at setup of RocketJoePythonTests.test_display_data ___________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7f1e41a46ba8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: ______________ ERROR at setup of RocketJoePythonTests.test_error _______________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7f1e41a46ba8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: __________ ERROR at setup of RocketJoePythonTests.test_execute_result __________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7f1e41a46ba8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: __________ ERROR at setup of RocketJoePythonTests.test_execute_stderr __________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7f1e41a46ba8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: __________ ERROR at setup of RocketJoePythonTests.test_execute_stdout __________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7f1e41a46ba8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: _____________ ERROR at setup of RocketJoePythonTests.test_history ______________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7f1e41a46ba8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: _____________ ERROR at setup of RocketJoePythonTests.test_inspect ______________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7f1e41a46ba8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: ___________ ERROR at setup of RocketJoePythonTests.test_is_complete ____________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7f1e41a46ba8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: ___________ ERROR at setup of RocketJoePythonTests.test_kernel_info ____________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7f1e41a46ba8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: ______________ ERROR at setup of RocketJoePythonTests.test_pager _______________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7f1e41a46ba8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: =================================== FAILURES ===================================
rocketjoe_jupyter_1 | 2: ______________________ test_rocketjoe_kernel_info_request ______________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7f1e420218d0>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7f1e3e4f6470>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7f1e3e49b9d8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7f1e41a17780>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_kernel_info_request(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:71:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7f1e420218d0>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 12:14:52.684] [__default__] [info] [pid 47 tid 47]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 12:14:52.684] [__default__] [info] [pid 47 tid 47] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-6a933165-e8f72d95d61048df70a5a4f5.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:14:52.684] [__default__] [info] [pid 47 tid 47] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 12:14:52.684] [__default__] [info] [pid 47 tid 47] construct process pool
rocketjoe_jupyter_1 | 2: [2020-06-25 12:14:52.711] [__default__] [info] [pid 47 tid 47] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 12:14:52.711] [__default__] [info] [pid 47 tid 47] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 12:14:52.711] [__default__] [info] [pid 47 tid 47] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-6a933165-e8f72d95d61048df70a5a4f5.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:14:52.711] [__default__] [info] [pid 47 tid 47] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 12:14:53.490] [__default__] [info] [pid 47 tid 47] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=47)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002b0 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x179dc97)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002b0 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 __libc_start_main <null> (libc.so.6+0x2409a)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x5613635b1b80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=49, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=47)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002d0 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x179dc97)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002d0 by main thread:
rocketjoe_jupyter_1 | 2: [failed to restore the stack]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x5613635b1b80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=49, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=47)
rocketjoe_jupyter_1 | 2: Read of size 1 at 0x7b0800001010 by main thread:
rocketjoe_jupyter_1 | 2: #0 strncpy <null> (libtsan.so.0+0x2b783)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0x81f63)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:27 (rocketjoed+0x1cd82ca)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x19bc2f3)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x15a95da)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0800001010 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1798ca6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Location is heap block of size 20 at 0x7b0800001000 allocated by thread T1:
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1798ca6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x5613635b1b80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=49, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2b783) in strncpy
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=47)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000810 by main thread:
rocketjoe_jupyter_1 | 2: #0 open64 <null> (libtsan.so.0+0x2de81)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0xdf106)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:34 (rocketjoed+0x1cd8569)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x19bc2f3)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x15a95da)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000810 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x179dc97)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x5613635b1b80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=49, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2de81) in __interceptor_open64
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 40791,
rocketjoe_jupyter_1 | 2: "hb_port": 57657,
rocketjoe_jupyter_1 | 2: "iopub_port": 41511,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "e56b3f81-bd4982070d149e9a9649fffe",
rocketjoe_jupyter_1 | 2: "shell_port": 35257,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 48571,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=47)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400001880 by thread T8:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 boost::asio::detail::reactive_socket_move_accept_op<boost::asio::ip::tcp, boost::asio::strand<boost::asio::io_context::executor_type>, boost::beast::detail::bind_front_wrapper<void (goblin_engineer::components::http_server::listener::*)(boost::system::error_code, boost::asio::basic_stream_socket<boost::asio::ip::tcp, boost::asio::executor>), std::shared_ptr<goblin_engineer::components::http_server::listener> >, boost::asio::detail::io_object_executor<boost::asio::executor> >::reactive_socket_move_accept_op(boost::asio::strand<boost::asio::io_context::executor_type> const&, int, unsigned char, boost::asio::ip::tcp const&, boost::asio::ip::basic_endpoint<boost::asio::ip::tcp>*, boost::beast::detail::bind_front_wrapper<void (goblin_engineer::components::http_server::listener::*)(boost::system::error_code, boost::asio::basic_stream_socket<boost::asio::ip::tcp, boost::asio::executor>), std::shared_ptr<goblin_engineer::components::http_server::listener> >&, boost::asio::detail::io_object_executor<boost::asio::executor> const&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/detail/reactive_socket_accept_op.hpp:172 (rocketjoed+0x181c0e7)
rocketjoe_jupyter_1 | 2: #3 boost::asio::detail::scheduler_operation::complete(void*, boost::system::error_code const&, unsigned long) <null> (rocketjoed+0x17f8245)
rocketjoe_jupyter_1 | 2: #4 boost::asio::io_context::run() /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/impl/io_context.ipp:63 (rocketjoed+0x17f9eae)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400001880 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 actor_zeta::intrusive_ptr_release(actor_zeta::ref_counted const*) /root/.conan/data/actor-zeta/1.0.0a4/cyberduckninja/stable/build/af0fbc5eb7376a4b9749db37a5c402b36d452909/source_subfolder/core/actor-zeta/detail/ref_counted.hpp:48 (rocketjoed+0x17fa033)
rocketjoe_jupyter_1 | 2: #3 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:29 (rocketjoed+0x15a9a17)
rocketjoe_jupyter_1 | 2: #4 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T8 (tid=58, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:29 (rocketjoed+0x15a9a17)
rocketjoe_jupyter_1 | 2: #3 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=47)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400001900 by thread T4:
rocketjoe_jupyter_1 | 2: #0 accept4 <null> (libtsan.so.0+0x392d3)
rocketjoe_jupyter_1 | 2: #1 zmq::tcp_listener_t::accept() /home/conan/.conan/data/zmq/4.3.2/bincrafters/stable/build/9d43b0a6dcf99be58f9186c18969d7b3c0292752/sources_subfolder/src/tcp_listener.cpp:205 (rocketjoed+0x1dd870f)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400001900 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:196 (rocketjoed+0x15a0b5c)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T4 'ZMQbg/IO/0' (tid=54, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 zmq::thread_t::start(void (*)(void*), void*, char const*) /home/conan/.conan/data/zmq/4.3.2/bincrafters/stable/build/9d43b0a6dcf99be58f9186c18969d7b3c0292752/sources_subfolder/src/thread.cpp:236 (rocketjoed+0x1dd8f7b)
rocketjoe_jupyter_1 | 2: #2 zmq::socket_t::socket_t(zmq::context_t&, zmq::socket_type) /root/.conan/data/cppzmq/4.6.0/bincrafters/stable/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/zmq.hpp:1573 (rocketjoed+0x19b3652)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:105 (rocketjoed+0x19b3652)
rocketjoe_jupyter_1 | 2: #4 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:300 (rocketjoed+0x19bc590)
rocketjoe_jupyter_1 | 2: #5 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x15a95da)
rocketjoe_jupyter_1 | 2: #6 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x392d3) in __interceptor_accept4
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: _______________________ test_rocketjoe_execute_request_1 _______________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7f1e3e524ba8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7f1e3e4f6470>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7f1e3dabf6a8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7f1e3e4ef9b0>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_execute_request_1(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:81:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7f1e3e524ba8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 12:15:59.683] [__default__] [info] [pid 72 tid 72]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 12:15:59.683] [__default__] [info] [pid 72 tid 72] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-a6732d7a-480f5e83c80bbf396dc460d5.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:15:59.683] [__default__] [info] [pid 72 tid 72] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 12:15:59.683] [__default__] [info] [pid 72 tid 72] construct process pool
rocketjoe_jupyter_1 | 2: [2020-06-25 12:15:59.710] [__default__] [info] [pid 72 tid 72] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 12:15:59.710] [__default__] [info] [pid 72 tid 72] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 12:15:59.710] [__default__] [info] [pid 72 tid 72] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-a6732d7a-480f5e83c80bbf396dc460d5.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:15:59.710] [__default__] [info] [pid 72 tid 72] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 12:16:00.507] [__default__] [info] [pid 72 tid 72] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=72)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002b0 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x179dc97)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002b0 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 __libc_start_main <null> (libc.so.6+0x2409a)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x55e5a720db80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=74, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=72)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002d0 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x179dc97)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002d0 by main thread:
rocketjoe_jupyter_1 | 2: [failed to restore the stack]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x55e5a720db80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=74, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=72)
rocketjoe_jupyter_1 | 2: Read of size 1 at 0x7b0800001010 by main thread:
rocketjoe_jupyter_1 | 2: #0 strncpy <null> (libtsan.so.0+0x2b783)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0x81f63)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:27 (rocketjoed+0x1cd82ca)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x19bc2f3)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x15a95da)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0800001010 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1798ca6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Location is heap block of size 20 at 0x7b0800001000 allocated by thread T1:
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1798ca6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x55e5a720db80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=74, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2b783) in strncpy
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=72)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000810 by main thread:
rocketjoe_jupyter_1 | 2: #0 open64 <null> (libtsan.so.0+0x2de81)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0xdf106)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:34 (rocketjoed+0x1cd8569)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x19bc2f3)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x15a95da)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000810 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x179dc97)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x55e5a720db80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=74, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2de81) in __interceptor_open64
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 55991,
rocketjoe_jupyter_1 | 2: "hb_port": 53351,
rocketjoe_jupyter_1 | 2: "iopub_port": 43581,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "993bb3c4-313b9477e9242ed6bfc1e4fa",
rocketjoe_jupyter_1 | 2: "shell_port": 33457,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 44357,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=72)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400001880 by thread T8:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 boost::asio::detail::reactive_socket_move_accept_op<boost::asio::ip::tcp, boost::asio::strand<boost::asio::io_context::executor_type>, boost::beast::detail::bind_front_wrapper<void (goblin_engineer::components::http_server::listener::*)(boost::system::error_code, boost::asio::basic_stream_socket<boost::asio::ip::tcp, boost::asio::executor>), std::shared_ptr<goblin_engineer::components::http_server::listener> >, boost::asio::detail::io_object_executor<boost::asio::executor> >::reactive_socket_move_accept_op(boost::asio::strand<boost::asio::io_context::executor_type> const&, int, unsigned char, boost::asio::ip::tcp const&, boost::asio::ip::basic_endpoint<boost::asio::ip::tcp>*, boost::beast::detail::bind_front_wrapper<void (goblin_engineer::components::http_server::listener::*)(boost::system::error_code, boost::asio::basic_stream_socket<boost::asio::ip::tcp, boost::asio::executor>), std::shared_ptr<goblin_engineer::components::http_server::listener> >&, boost::asio::detail::io_object_executor<boost::asio::executor> const&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/detail/reactive_socket_accept_op.hpp:172 (rocketjoed+0x181c0e7)
rocketjoe_jupyter_1 | 2: #3 boost::asio::detail::scheduler_operation::complete(void*, boost::system::error_code const&, unsigned long) <null> (rocketjoed+0x17f8245)
rocketjoe_jupyter_1 | 2: #4 boost::asio::io_context::run() /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/impl/io_context.ipp:63 (rocketjoed+0x17f9eae)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400001880 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 actor_zeta::intrusive_ptr_release(actor_zeta::ref_counted const*) /root/.conan/data/actor-zeta/1.0.0a4/cyberduckninja/stable/build/af0fbc5eb7376a4b9749db37a5c402b36d452909/source_subfolder/core/actor-zeta/detail/ref_counted.hpp:48 (rocketjoed+0x17fa033)
rocketjoe_jupyter_1 | 2: #3 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:29 (rocketjoed+0x15a9a17)
rocketjoe_jupyter_1 | 2: #4 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T8 (tid=83, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:29 (rocketjoed+0x15a9a17)
rocketjoe_jupyter_1 | 2: #3 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=72)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400002800 by thread T4:
rocketjoe_jupyter_1 | 2: #0 accept4 <null> (libtsan.so.0+0x392d3)
rocketjoe_jupyter_1 | 2: #1 zmq::tcp_listener_t::accept() /home/conan/.conan/data/zmq/4.3.2/bincrafters/stable/build/9d43b0a6dcf99be58f9186c18969d7b3c0292752/sources_subfolder/src/tcp_listener.cpp:205 (rocketjoed+0x1dd870f)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400002800 by thread T8:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 boost::asio::detail::reactive_socket_move_accept_op<boost::asio::ip::tcp, boost::asio::strand<boost::asio::io_context::executor_type>, boost::beast::detail::bind_front_wrapper<void (goblin_engineer::components::http_server::listener::*)(boost::system::error_code, boost::asio::basic_stream_socket<boost::asio::ip::tcp, boost::asio::executor>), std::shared_ptr<goblin_engineer::components::http_server::listener> >, boost::asio::detail::io_object_executor<boost::asio::executor> >::reactive_socket_move_accept_op(boost::asio::strand<boost::asio::io_context::executor_type> const&, int, unsigned char, boost::asio::ip::tcp const&, boost::asio::ip::basic_endpoint<boost::asio::ip::tcp>*, boost::beast::detail::bind_front_wrapper<void (goblin_engineer::components::http_server::listener::*)(boost::system::error_code, boost::asio::basic_stream_socket<boost::asio::ip::tcp, boost::asio::executor>), std::shared_ptr<goblin_engineer::components::http_server::listener> >&, boost::asio::detail::io_object_executor<boost::asio::executor> const&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/detail/reactive_socket_accept_op.hpp:172 (rocketjoed+0x181c0e7)
rocketjoe_jupyter_1 | 2: #3 boost::asio::detail::scheduler_operation::complete(void*, boost::system::error_code const&, unsigned long) <null> (rocketjoed+0x17f8245)
rocketjoe_jupyter_1 | 2: #4 boost::asio::io_context::run() /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/impl/io_context.ipp:63 (rocketjoed+0x17f9eae)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T4 'ZMQbg/IO/0' (tid=79, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 zmq::thread_t::start(void (*)(void*), void*, char const*) /home/conan/.conan/data/zmq/4.3.2/bincrafters/stable/build/9d43b0a6dcf99be58f9186c18969d7b3c0292752/sources_subfolder/src/thread.cpp:236 (rocketjoed+0x1dd8f7b)
rocketjoe_jupyter_1 | 2: #2 zmq::socket_t::socket_t(zmq::context_t&, zmq::socket_type) /root/.conan/data/cppzmq/4.6.0/bincrafters/stable/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/zmq.hpp:1573 (rocketjoed+0x19b3652)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:105 (rocketjoed+0x19b3652)
rocketjoe_jupyter_1 | 2: #4 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:300 (rocketjoed+0x19bc590)
rocketjoe_jupyter_1 | 2: #5 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x15a95da)
rocketjoe_jupyter_1 | 2: #6 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T8 (tid=83, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:29 (rocketjoed+0x15a9a17)
rocketjoe_jupyter_1 | 2: #3 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x392d3) in __interceptor_accept4
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: _______________________ test_rocketjoe_execute_request_2 _______________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7f1e3e4d86d8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7f1e3e4f6470>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7f1e3e3fd598>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7f1e3e4f7e10>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_execute_request_2(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:91:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7f1e3e4d86d8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 12:17:07.325] [__default__] [info] [pid 97 tid 97]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 12:17:07.325] [__default__] [info] [pid 97 tid 97] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-72030803-d0c6a105dc856d3632a84aff.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:17:07.325] [__default__] [info] [pid 97 tid 97] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 12:17:07.325] [__default__] [info] [pid 97 tid 97] construct process pool
rocketjoe_jupyter_1 | 2: [2020-06-25 12:17:07.352] [__default__] [info] [pid 97 tid 97] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 12:17:07.352] [__default__] [info] [pid 97 tid 97] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 12:17:07.352] [__default__] [info] [pid 97 tid 97] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-72030803-d0c6a105dc856d3632a84aff.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:17:07.352] [__default__] [info] [pid 97 tid 97] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 12:17:08.144] [__default__] [info] [pid 97 tid 97] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=97)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002b0 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x179dc97)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002b0 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 __libc_start_main <null> (libc.so.6+0x2409a)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x563abf15cb80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=99, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=97)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002d0 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x179dc97)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002d0 by main thread:
rocketjoe_jupyter_1 | 2: [failed to restore the stack]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x563abf15cb80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=99, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=97)
rocketjoe_jupyter_1 | 2: Read of size 1 at 0x7b0800001010 by main thread:
rocketjoe_jupyter_1 | 2: #0 strncpy <null> (libtsan.so.0+0x2b783)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0x81f63)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:27 (rocketjoed+0x1cd82ca)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x19bc2f3)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x15a95da)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0800001010 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1798ca6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Location is heap block of size 20 at 0x7b0800001000 allocated by thread T1:
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1798ca6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x563abf15cb80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=99, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2b783) in strncpy
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=97)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000810 by main thread:
rocketjoe_jupyter_1 | 2: #0 open64 <null> (libtsan.so.0+0x2de81)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0xdf106)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:34 (rocketjoed+0x1cd8569)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x19bc2f3)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x15a95da)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000810 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x179dc97)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x563abf15cb80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=99, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2de81) in __interceptor_open64
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 56661,
rocketjoe_jupyter_1 | 2: "hb_port": 37179,
rocketjoe_jupyter_1 | 2: "iopub_port": 54329,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "c9591c05-950efa535619352261b1b712",
rocketjoe_jupyter_1 | 2: "shell_port": 43619,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 43511,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=97)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000330 by thread T8:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 boost::asio::detail::reactive_socket_move_accept_op<boost::asio::ip::tcp, boost::asio::strand<boost::asio::io_context::executor_type>, boost::beast::detail::bind_front_wrapper<void (goblin_engineer::components::http_server::listener::*)(boost::system::error_code, boost::asio::basic_stream_socket<boost::asio::ip::tcp, boost::asio::executor>), std::shared_ptr<goblin_engineer::components::http_server::listener> >, boost::asio::detail::io_object_executor<boost::asio::executor> >::reactive_socket_move_accept_op(boost::asio::strand<boost::asio::io_context::executor_type> const&, int, unsigned char, boost::asio::ip::tcp const&, boost::asio::ip::basic_endpoint<boost::asio::ip::tcp>*, boost::beast::detail::bind_front_wrapper<void (goblin_engineer::components::http_server::listener::*)(boost::system::error_code, boost::asio::basic_stream_socket<boost::asio::ip::tcp, boost::asio::executor>), std::shared_ptr<goblin_engineer::components::http_server::listener> >&, boost::asio::detail::io_object_executor<boost::asio::executor> const&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/detail/reactive_socket_accept_op.hpp:172 (rocketjoed+0x181c0e7)
rocketjoe_jupyter_1 | 2: #3 boost::asio::detail::scheduler_operation::complete(void*, boost::system::error_code const&, unsigned long) <null> (rocketjoed+0x17f8245)
rocketjoe_jupyter_1 | 2: #4 boost::asio::io_context::run() /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/impl/io_context.ipp:63 (rocketjoed+0x17f9eae)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000330 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:30 (rocketjoed+0x15a9a25)
rocketjoe_jupyter_1 | 2: #3 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T8 (tid=108, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:29 (rocketjoed+0x15a9a17)
rocketjoe_jupyter_1 | 2: #3 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=97)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400002800 by thread T4:
rocketjoe_jupyter_1 | 2: #0 accept4 <null> (libtsan.so.0+0x392d3)
rocketjoe_jupyter_1 | 2: #1 zmq::tcp_listener_t::accept() /home/conan/.conan/data/zmq/4.3.2/bincrafters/stable/build/9d43b0a6dcf99be58f9186c18969d7b3c0292752/sources_subfolder/src/tcp_listener.cpp:205 (rocketjoed+0x1dd870f)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400002800 by thread T8:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 boost::asio::detail::reactive_socket_move_accept_op<boost::asio::ip::tcp, boost::asio::strand<boost::asio::io_context::executor_type>, boost::beast::detail::bind_front_wrapper<void (goblin_engineer::components::http_server::listener::*)(boost::system::error_code, boost::asio::basic_stream_socket<boost::asio::ip::tcp, boost::asio::executor>), std::shared_ptr<goblin_engineer::components::http_server::listener> >, boost::asio::detail::io_object_executor<boost::asio::executor> >::reactive_socket_move_accept_op(boost::asio::strand<boost::asio::io_context::executor_type> const&, int, unsigned char, boost::asio::ip::tcp const&, boost::asio::ip::basic_endpoint<boost::asio::ip::tcp>*, boost::beast::detail::bind_front_wrapper<void (goblin_engineer::components::http_server::listener::*)(boost::system::error_code, boost::asio::basic_stream_socket<boost::asio::ip::tcp, boost::asio::executor>), std::shared_ptr<goblin_engineer::components::http_server::listener> >&, boost::asio::detail::io_object_executor<boost::asio::executor> const&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/detail/reactive_socket_accept_op.hpp:172 (rocketjoed+0x181c0e7)
rocketjoe_jupyter_1 | 2: #3 boost::asio::detail::scheduler_operation::complete(void*, boost::system::error_code const&, unsigned long) <null> (rocketjoed+0x17f8245)
rocketjoe_jupyter_1 | 2: #4 boost::asio::io_context::run() /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/impl/io_context.ipp:63 (rocketjoed+0x17f9eae)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T4 'ZMQbg/IO/0' (tid=104, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 zmq::thread_t::start(void (*)(void*), void*, char const*) /home/conan/.conan/data/zmq/4.3.2/bincrafters/stable/build/9d43b0a6dcf99be58f9186c18969d7b3c0292752/sources_subfolder/src/thread.cpp:236 (rocketjoed+0x1dd8f7b)
rocketjoe_jupyter_1 | 2: #2 zmq::socket_t::socket_t(zmq::context_t&, zmq::socket_type) /root/.conan/data/cppzmq/4.6.0/bincrafters/stable/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/zmq.hpp:1573 (rocketjoed+0x19b3652)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:105 (rocketjoed+0x19b3652)
rocketjoe_jupyter_1 | 2: #4 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:300 (rocketjoed+0x19bc590)
rocketjoe_jupyter_1 | 2: #5 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x15a95da)
rocketjoe_jupyter_1 | 2: #6 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T8 (tid=108, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:29 (rocketjoed+0x15a9a17)
rocketjoe_jupyter_1 | 2: #3 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x392d3) in __interceptor_accept4
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ______________________ test_rocketjoe_complete_request_1 _______________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7f1e3e4e3208>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7f1e3e4f6470>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7f1e3e419488>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7f1e3e4ea240>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_complete_request_1(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:101:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7f1e3e4e3208>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 12:18:13.964] [__default__] [info] [pid 122 tid 122]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 12:18:13.964] [__default__] [info] [pid 122 tid 122] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-52f9e74d-945482e8bc184e62eec5dacf.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:18:13.964] [__default__] [info] [pid 122 tid 122] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 12:18:14.074] [__default__] [info] [pid 122 tid 122] construct process pool
rocketjoe_jupyter_1 | 2: [2020-06-25 12:18:14.098] [__default__] [info] [pid 122 tid 122] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 12:18:14.098] [__default__] [info] [pid 122 tid 122] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 12:18:14.098] [__default__] [info] [pid 122 tid 122] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-52f9e74d-945482e8bc184e62eec5dacf.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:18:14.098] [__default__] [info] [pid 122 tid 122] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 12:18:14.689] [__default__] [info] [pid 122 tid 122] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=122)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000810 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 boost::filesystem::path const& boost::any_cast<boost::filesystem::path const&>(boost::any const&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/any.hpp:298 (rocketjoed+0x15a056a)
rocketjoe_jupyter_1 | 2: #3 boost::filesystem::path const& boost::program_options::variable_value::as<boost::filesystem::path>() const /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/program_options/variables_map.hpp:69 (rocketjoed+0x15a056a)
rocketjoe_jupyter_1 | 2: #4 main ../apps/rocketjoed/main.cpp:173 (rocketjoed+0x15a056a)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000810 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x179dc97)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x55ee4e995b80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=124, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 46629,
rocketjoe_jupyter_1 | 2: "hb_port": 47005,
rocketjoe_jupyter_1 | 2: "iopub_port": 41645,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "52a62f93-53a07f2b060e8b6d1ee82ab0",
rocketjoe_jupyter_1 | 2: "shell_port": 41643,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 44673,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=122)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002e0 by thread T8:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 boost::asio::detail::reactive_socket_move_accept_op<boost::asio::ip::tcp, boost::asio::strand<boost::asio::io_context::executor_type>, boost::beast::detail::bind_front_wrapper<void (goblin_engineer::components::http_server::listener::*)(boost::system::error_code, boost::asio::basic_stream_socket<boost::asio::ip::tcp, boost::asio::executor>), std::shared_ptr<goblin_engineer::components::http_server::listener> >, boost::asio::detail::io_object_executor<boost::asio::executor> >::reactive_socket_move_accept_op(boost::asio::strand<boost::asio::io_context::executor_type> const&, int, unsigned char, boost::asio::ip::tcp const&, boost::asio::ip::basic_endpoint<boost::asio::ip::tcp>*, boost::beast::detail::bind_front_wrapper<void (goblin_engineer::components::http_server::listener::*)(boost::system::error_code, boost::asio::basic_stream_socket<boost::asio::ip::tcp, boost::asio::executor>), std::shared_ptr<goblin_engineer::components::http_server::listener> >&, boost::asio::detail::io_object_executor<boost::asio::executor> const&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/detail/reactive_socket_accept_op.hpp:172 (rocketjoed+0x181c0e7)
rocketjoe_jupyter_1 | 2: #3 boost::asio::detail::scheduler_operation::complete(void*, boost::system::error_code const&, unsigned long) <null> (rocketjoed+0x17f8245)
rocketjoe_jupyter_1 | 2: #4 boost::asio::io_context::run() /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/impl/io_context.ipp:63 (rocketjoed+0x17f9eae)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002e0 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:30 (rocketjoed+0x15a9a25)
rocketjoe_jupyter_1 | 2: #3 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T8 (tid=133, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:29 (rocketjoed+0x15a9a17)
rocketjoe_jupyter_1 | 2: #3 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ______________________ test_rocketjoe_complete_request_2 _______________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7f1e3e52f198>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7f1e3e4f6470>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7f1e3dae59d8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7f1e3e444978>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_complete_request_2(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:111:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7f1e3e52f198>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 12:19:20.382] [__default__] [info] [pid 147 tid 147]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 12:19:20.382] [__default__] [info] [pid 147 tid 147] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-bd698270-6dd3fb94350aa9ba46d235b7.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:19:20.382] [__default__] [info] [pid 147 tid 147] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 12:19:20.382] [__default__] [info] [pid 147 tid 147] construct process pool
rocketjoe_jupyter_1 | 2: [2020-06-25 12:19:20.409] [__default__] [info] [pid 147 tid 147] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 12:19:20.409] [__default__] [info] [pid 147 tid 147] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 12:19:20.409] [__default__] [info] [pid 147 tid 147] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-bd698270-6dd3fb94350aa9ba46d235b7.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:19:20.409] [__default__] [info] [pid 147 tid 147] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 12:19:21.209] [__default__] [info] [pid 147 tid 147] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=147)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002b0 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x179dc97)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002b0 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 unsigned short const& boost::any_cast<unsigned short const&>(boost::any const&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/any.hpp:298 (rocketjoed+0x15a0285)
rocketjoe_jupyter_1 | 2: #3 unsigned short const& boost::program_options::variable_value::as<unsigned short>() const /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/program_options/variables_map.hpp:69 (rocketjoed+0x15a0285)
rocketjoe_jupyter_1 | 2: #4 main ../apps/rocketjoed/main.cpp:102 (rocketjoed+0x15a0285)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x55e14e151b80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=149, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=147)
rocketjoe_jupyter_1 | 2: Read of size 1 at 0x7b0800001010 by main thread:
rocketjoe_jupyter_1 | 2: #0 strncpy <null> (libtsan.so.0+0x2b783)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0x81f63)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:27 (rocketjoed+0x1cd82ca)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x19bc2f3)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x15a95da)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0800001010 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1798ca6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Location is heap block of size 20 at 0x7b0800001000 allocated by thread T1:
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1798ca6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x55e14e151b80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=149, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2b783) in strncpy
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=147)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000810 by main thread:
rocketjoe_jupyter_1 | 2: #0 open64 <null> (libtsan.so.0+0x2de81)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0xdf106)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:34 (rocketjoed+0x1cd8569)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x19bc2f3)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x15a95da)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000810 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x179dc97)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x55e14e151b80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=149, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2de81) in __interceptor_open64
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 40499,
rocketjoe_jupyter_1 | 2: "hb_port": 34865,
rocketjoe_jupyter_1 | 2: "iopub_port": 40515,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "691ed573-02a310c3a285d93e7acca6d2",
rocketjoe_jupyter_1 | 2: "shell_port": 34863,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 54023,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=147)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400001870 by thread T8:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 boost::asio::detail::reactive_socket_move_accept_op<boost::asio::ip::tcp, boost::asio::strand<boost::asio::io_context::executor_type>, boost::beast::detail::bind_front_wrapper<void (goblin_engineer::components::http_server::listener::*)(boost::system::error_code, boost::asio::basic_stream_socket<boost::asio::ip::tcp, boost::asio::executor>), std::shared_ptr<goblin_engineer::components::http_server::listener> >, boost::asio::detail::io_object_executor<boost::asio::executor> >::reactive_socket_move_accept_op(boost::asio::strand<boost::asio::io_context::executor_type> const&, int, unsigned char, boost::asio::ip::tcp const&, boost::asio::ip::basic_endpoint<boost::asio::ip::tcp>*, boost::beast::detail::bind_front_wrapper<void (goblin_engineer::components::http_server::listener::*)(boost::system::error_code, boost::asio::basic_stream_socket<boost::asio::ip::tcp, boost::asio::executor>), std::shared_ptr<goblin_engineer::components::http_server::listener> >&, boost::asio::detail::io_object_executor<boost::asio::executor> const&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/detail/reactive_socket_accept_op.hpp:172 (rocketjoed+0x181c0e7)
rocketjoe_jupyter_1 | 2: #3 boost::asio::detail::scheduler_operation::complete(void*, boost::system::error_code const&, unsigned long) <null> (rocketjoed+0x17f8245)
rocketjoe_jupyter_1 | 2: #4 boost::asio::io_context::run() /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/impl/io_context.ipp:63 (rocketjoed+0x17f9eae)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400001870 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 actor_zeta::intrusive_ptr_release(actor_zeta::ref_counted const*) /root/.conan/data/actor-zeta/1.0.0a4/cyberduckninja/stable/build/af0fbc5eb7376a4b9749db37a5c402b36d452909/source_subfolder/core/actor-zeta/detail/ref_counted.hpp:48 (rocketjoed+0x17fa033)
rocketjoe_jupyter_1 | 2: #3 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:29 (rocketjoed+0x15a9a17)
rocketjoe_jupyter_1 | 2: #4 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T8 (tid=158, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:29 (rocketjoed+0x15a9a17)
rocketjoe_jupyter_1 | 2: #3 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: _____________________ test_rocketjoe_is_complete_request_1 _____________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7f1e41a178d0>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7f1e3e4f6470>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7f1e3da372f0>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7f1e41a17710>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_is_complete_request_1(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:121:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7f1e41a178d0>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 12:20:26.981] [__default__] [info] [pid 172 tid 172]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 12:20:26.981] [__default__] [info] [pid 172 tid 172] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-aa025f31-4cd8ea5e768624a9b89d0ddc.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:20:26.981] [__default__] [info] [pid 172 tid 172] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 12:20:26.981] [__default__] [info] [pid 172 tid 172] construct process pool
rocketjoe_jupyter_1 | 2: [2020-06-25 12:20:27.008] [__default__] [info] [pid 172 tid 172] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 12:20:27.008] [__default__] [info] [pid 172 tid 172] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 12:20:27.008] [__default__] [info] [pid 172 tid 172] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-aa025f31-4cd8ea5e768624a9b89d0ddc.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:20:27.008] [__default__] [info] [pid 172 tid 172] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 12:20:27.793] [__default__] [info] [pid 172 tid 172] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=172)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002b0 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x179dc97)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002b0 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 __libc_start_main <null> (libc.so.6+0x2409a)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x55d2c19deb80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=174, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=172)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002d0 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x179dc97)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002d0 by main thread:
rocketjoe_jupyter_1 | 2: [failed to restore the stack]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x55d2c19deb80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=174, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=172)
rocketjoe_jupyter_1 | 2: Read of size 1 at 0x7b0800001010 by main thread:
rocketjoe_jupyter_1 | 2: #0 strncpy <null> (libtsan.so.0+0x2b783)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0x81f63)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:27 (rocketjoed+0x1cd82ca)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x19bc2f3)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x15a95da)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0800001010 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1798ca6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Location is heap block of size 20 at 0x7b0800001000 allocated by thread T1:
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1798ca6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x55d2c19deb80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=174, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2b783) in strncpy
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=172)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000810 by main thread:
rocketjoe_jupyter_1 | 2: #0 open64 <null> (libtsan.so.0+0x2de81)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0xdf106)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:34 (rocketjoed+0x1cd8569)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x19bc2f3)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x15a95da)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000810 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x179dc97)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x55d2c19deb80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=174, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2de81) in __interceptor_open64
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 44225,
rocketjoe_jupyter_1 | 2: "hb_port": 45957,
rocketjoe_jupyter_1 | 2: "iopub_port": 33639,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "7a7f2083-793c93df54df3d1cf72b7560",
rocketjoe_jupyter_1 | 2: "shell_port": 48451,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 46899,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=172)
rocketjoe_jupyter_1 | 2: Read of size 8 at 0x7ba0000001e0 by main thread:
rocketjoe_jupyter_1 | 2: #0 epoll_ctl <null> (libtsan.so.0+0x2f9f7)
rocketjoe_jupyter_1 | 2: #1 boost::asio::detail::epoll_reactor::epoll_reactor(boost::asio::execution_context&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/detail/impl/epoll_reactor.ipp:61 (rocketjoed+0x16a1c79)
rocketjoe_jupyter_1 | 2: #2 boost::asio::execution_context::service* boost::asio::detail::service_registry::create<boost::asio::detail::epoll_reactor, boost::asio::execution_context>(void*) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/detail/impl/service_registry.hpp:87 (rocketjoed+0x16a1c79)
rocketjoe_jupyter_1 | 2: #3 boost::asio::detail::service_registry::do_use_service(boost::asio::execution_context::service::key const&, boost::asio::execution_context::service* (*)(void*), void*) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/detail/impl/service_registry.ipp:132 (rocketjoed+0x16683ec)
rocketjoe_jupyter_1 | 2: #4 boost::asio::detail::epoll_reactor& boost::asio::detail::service_registry::use_service<boost::asio::detail::epoll_reactor>() /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/detail/impl/service_registry.hpp:30 (rocketjoed+0x16a2d64)
rocketjoe_jupyter_1 | 2: #5 boost::asio::detail::epoll_reactor& boost::asio::use_service<boost::asio::detail::epoll_reactor>(boost::asio::execution_context&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/impl/execution_context.hpp:35 (rocketjoed+0x17944b2)
rocketjoe_jupyter_1 | 2: #6 boost::asio::detail::signal_set_service::signal_set_service(boost::asio::execution_context&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/detail/impl/signal_set_service.ipp:128 (rocketjoed+0x17944b2)
rocketjoe_jupyter_1 | 2: #7 boost::asio::execution_context::service* boost::asio::detail::service_registry::create<boost::asio::detail::signal_set_service, boost::asio::io_context>(void*) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/detail/impl/service_registry.hpp:87 (rocketjoed+0x17944b2)
rocketjoe_jupyter_1 | 2: #8 boost::asio::detail::service_registry::do_use_service(boost::asio::execution_context::service::key const&, boost::asio::execution_context::service* (*)(void*), void*) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/detail/impl/service_registry.ipp:132 (rocketjoed+0x16683ec)
rocketjoe_jupyter_1 | 2: #9 boost::asio::detail::signal_set_service& boost::asio::detail::service_registry::use_service<boost::asio::detail::signal_set_service>(boost::asio::io_context&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/detail/impl/service_registry.hpp:39 (rocketjoed+0x16a9812)
rocketjoe_jupyter_1 | 2: #10 boost::asio::detail::signal_set_service& boost::asio::use_service<boost::asio::detail::signal_set_service>(boost::asio::io_context&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/impl/io_context.hpp:42 (rocketjoed+0x16a9812)
rocketjoe_jupyter_1 | 2: #11 boost::asio::detail::io_object_impl<boost::asio::detail::signal_set_service, boost::asio::executor>::io_object_impl<boost::asio::io_context>(boost::asio::io_context&, std::enable_if<std::is_convertible<boost::asio::io_context&, boost::asio::execution_context&>::value, void>::type*) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/detail/io_object_impl.hpp:86 (rocketjoed+0x16a9812)
rocketjoe_jupyter_1 | 2: #12 boost::asio::basic_signal_set<boost::asio::executor>::basic_signal_set<boost::asio::io_context>(boost::asio::io_context&, int, int, std::enable_if<std::is_convertible<boost::asio::io_context&, boost::asio::execution_context&>::value, void>::type*) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/basic_signal_set.hpp:230 (rocketjoed+0x16a9812)
rocketjoe_jupyter_1 | 2: #13 main ../apps/rocketjoed/main.cpp:196 (rocketjoed+0x15a0b5c)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7ba0000001e0 by thread T8:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 boost::asio::detail::reactive_socket_move_accept_op<boost::asio::ip::tcp, boost::asio::strand<boost::asio::io_context::executor_type>, boost::beast::detail::bind_front_wrapper<void (goblin_engineer::components::http_server::listener::*)(boost::system::error_code, boost::asio::basic_stream_socket<boost::asio::ip::tcp, boost::asio::executor>), std::shared_ptr<goblin_engineer::components::http_server::listener> >, boost::asio::detail::io_object_executor<boost::asio::executor> >::reactive_socket_move_accept_op(boost::asio::strand<boost::asio::io_context::executor_type> const&, int, unsigned char, boost::asio::ip::tcp const&, boost::asio::ip::basic_endpoint<boost::asio::ip::tcp>*, boost::beast::detail::bind_front_wrapper<void (goblin_engineer::components::http_server::listener::*)(boost::system::error_code, boost::asio::basic_stream_socket<boost::asio::ip::tcp, boost::asio::executor>), std::shared_ptr<goblin_engineer::components::http_server::listener> >&, boost::asio::detail::io_object_executor<boost::asio::executor> const&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/detail/reactive_socket_accept_op.hpp:172 (rocketjoed+0x181c0e7)
rocketjoe_jupyter_1 | 2: #3 boost::asio::detail::scheduler_operation::complete(void*, boost::system::error_code const&, unsigned long) <null> (rocketjoed+0x17f8245)
rocketjoe_jupyter_1 | 2: #4 boost::asio::io_context::run() /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/impl/io_context.ipp:63 (rocketjoed+0x17f9eae)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Location is file descriptor 30 created by thread T8 at:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 boost::asio::detail::reactive_socket_move_accept_op<boost::asio::ip::tcp, boost::asio::strand<boost::asio::io_context::executor_type>, boost::beast::detail::bind_front_wrapper<void (goblin_engineer::components::http_server::listener::*)(boost::system::error_code, boost::asio::basic_stream_socket<boost::asio::ip::tcp, boost::asio::executor>), std::shared_ptr<goblin_engineer::components::http_server::listener> >, boost::asio::detail::io_object_executor<boost::asio::executor> >::reactive_socket_move_accept_op(boost::asio::strand<boost::asio::io_context::executor_type> const&, int, unsigned char, boost::asio::ip::tcp const&, boost::asio::ip::basic_endpoint<boost::asio::ip::tcp>*, boost::beast::detail::bind_front_wrapper<void (goblin_engineer::components::http_server::listener::*)(boost::system::error_code, boost::asio::basic_stream_socket<boost::asio::ip::tcp, boost::asio::executor>), std::shared_ptr<goblin_engineer::components::http_server::listener> >&, boost::asio::detail::io_object_executor<boost::asio::executor> const&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/detail/reactive_socket_accept_op.hpp:172 (rocketjoed+0x181c0e7)
rocketjoe_jupyter_1 | 2: #3 boost::asio::detail::scheduler_operation::complete(void*, boost::system::error_code const&, unsigned long) <null> (rocketjoed+0x17f8245)
rocketjoe_jupyter_1 | 2: #4 boost::asio::io_context::run() /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/impl/io_context.ipp:63 (rocketjoed+0x17f9eae)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T8 (tid=183, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:29 (rocketjoed+0x15a9a17)
rocketjoe_jupyter_1 | 2: #3 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f9f7) in __interceptor_epoll_ctl
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: _____________________ test_rocketjoe_is_complete_request_2 _____________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7f1e3d9ea668>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7f1e3e4f6470>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7f1e3db09400>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7f1e3e39a630>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_is_complete_request_2(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:131:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7f1e3d9ea668>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 12:21:33.466] [__default__] [info] [pid 197 tid 197]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 12:21:33.466] [__default__] [info] [pid 197 tid 197] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-0a08ba37-1d61b744da387715999a9d76.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:21:33.467] [__default__] [info] [pid 197 tid 197] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 12:21:33.467] [__default__] [info] [pid 197 tid 197] construct process pool
rocketjoe_jupyter_1 | 2: [2020-06-25 12:21:33.494] [__default__] [info] [pid 197 tid 197] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 12:21:33.494] [__default__] [info] [pid 197 tid 197] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 12:21:33.494] [__default__] [info] [pid 197 tid 197] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-0a08ba37-1d61b744da387715999a9d76.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:21:33.494] [__default__] [info] [pid 197 tid 197] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 12:21:34.281] [__default__] [info] [pid 197 tid 197] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=197)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002b0 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x179dc97)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002b0 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 unsigned short const& boost::any_cast<unsigned short const&>(boost::any const&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/any.hpp:298 (rocketjoed+0x15a0285)
rocketjoe_jupyter_1 | 2: #3 unsigned short const& boost::program_options::variable_value::as<unsigned short>() const /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/program_options/variables_map.hpp:69 (rocketjoed+0x15a0285)
rocketjoe_jupyter_1 | 2: #4 main ../apps/rocketjoed/main.cpp:102 (rocketjoed+0x15a0285)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x564a58730b80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=199, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=197)
rocketjoe_jupyter_1 | 2: Read of size 1 at 0x7b0800001010 by main thread:
rocketjoe_jupyter_1 | 2: #0 strncpy <null> (libtsan.so.0+0x2b783)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0x81f63)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:27 (rocketjoed+0x1cd82ca)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x19bc2f3)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x15a95da)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0800001010 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1798ca6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Location is heap block of size 20 at 0x7b0800001000 allocated by thread T1:
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1798ca6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x564a58730b80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=199, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2b783) in strncpy
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=197)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000810 by main thread:
rocketjoe_jupyter_1 | 2: #0 open64 <null> (libtsan.so.0+0x2de81)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0xdf106)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:34 (rocketjoed+0x1cd8569)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x19bc2f3)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x15a95da)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000810 by thread T1 (mutexes: write M96):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x179dc97)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M96 (0x564a58730b80) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x17964d1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=199, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x159f519)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2de81) in __interceptor_open64
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 55503,
rocketjoe_jupyter_1 | 2: "hb_port": 52985,
rocketjoe_jupyter_1 | 2: "iopub_port": 43233,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "18f75e13-ca26e33706ba9ccb34f46321",
rocketjoe_jupyter_1 | 2: "shell_port": 33211,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 50329,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=197)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400001870 by thread T8:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 boost::asio::detail::reactive_socket_move_accept_op<boost::asio::ip::tcp, boost::asio::strand<boost::asio::io_context::executor_type>, boost::beast::detail::bind_front_wrapper<void (goblin_engineer::components::http_server::listener::*)(boost::system::error_code, boost::asio::basic_stream_socket<boost::asio::ip::tcp, boost::asio::executor>), std::shared_ptr<goblin_engineer::components::http_server::listener> >, boost::asio::detail::io_object_executor<boost::asio::executor> >::reactive_socket_move_accept_op(boost::asio::strand<boost::asio::io_context::executor_type> const&, int, unsigned char, boost::asio::ip::tcp const&, boost::asio::ip::basic_endpoint<boost::asio::ip::tcp>*, boost::beast::detail::bind_front_wrapper<void (goblin_engineer::components::http_server::listener::*)(boost::system::error_code, boost::asio::basic_stream_socket<boost::asio::ip::tcp, boost::asio::executor>), std::shared_ptr<goblin_engineer::components::http_server::listener> >&, boost::asio::detail::io_object_executor<boost::asio::executor> const&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/detail/reactive_socket_accept_op.hpp:172 (rocketjoed+0x181c0e7)
rocketjoe_jupyter_1 | 2: #3 boost::asio::detail::scheduler_operation::complete(void*, boost::system::error_code const&, unsigned long) <null> (rocketjoed+0x17f8245)
rocketjoe_jupyter_1 | 2: #4 boost::asio::io_context::run() /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/asio/impl/io_context.ipp:63 (rocketjoed+0x17f9eae)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400001870 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 actor_zeta::intrusive_ptr_release(actor_zeta::ref_counted const*) /root/.conan/data/actor-zeta/1.0.0a4/cyberduckninja/stable/build/af0fbc5eb7376a4b9749db37a5c402b36d452909/source_subfolder/core/actor-zeta/detail/ref_counted.hpp:48 (rocketjoed+0x17fa033)
rocketjoe_jupyter_1 | 2: #3 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:29 (rocketjoed+0x15a9a17)
rocketjoe_jupyter_1 | 2: #4 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T8 (tid=208, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:29 (rocketjoed+0x15a9a17)
rocketjoe_jupyter_1 | 2: #3 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x15a08e4)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: =============================== warnings summary ===============================
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/nose/importer.py:12
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/nose/importer.py:12: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
rocketjoe_jupyter_1 | 2: from imp import find_module, load_module, acquire_lock, release_lock
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/messagespec.py:52
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/messagespec.py:52: DeprecationWarning: Traits should be given as instances, not types (for example, `Int()`, not `Int`). Passing types is deprecated in traitlets 4.1.
rocketjoe_jupyter_1 | 2: payload = List(Dict)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/messagespec.py:59
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/messagespec.py:59: DeprecationWarning: Traits should be given as instances, not types (for example, `Int()`, not `Int`). Passing types is deprecated in traitlets 4.1.
rocketjoe_jupyter_1 | 2: traceback = List(Unicode)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/messagespec.py:67
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/messagespec.py:67: DeprecationWarning: Traits should be given as instances, not types (for example, `Int()`, not `Int`). Passing types is deprecated in traitlets 4.1.
rocketjoe_jupyter_1 | 2: args = List(Unicode)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/messagespec.py:78
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/messagespec.py:78: DeprecationWarning: Traits should be given as instances, not types (for example, `Int()`, not `Int`). Passing types is deprecated in traitlets 4.1.
rocketjoe_jupyter_1 | 2: matches = List(Unicode)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py::test_rocketjoe_kernel_info_request
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:70: PytestBenchmarkWarning: Benchmark fixture was not used at all in this test!
rocketjoe_jupyter_1 | 2: def test_rocketjoe_kernel_info_request(benchmark) -> None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py::test_rocketjoe_execute_request_1
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:80: PytestBenchmarkWarning: Benchmark fixture was not used at all in this test!
rocketjoe_jupyter_1 | 2: def test_rocketjoe_execute_request_1(benchmark) -> None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py::test_rocketjoe_execute_request_2
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:90: PytestBenchmarkWarning: Benchmark fixture was not used at all in this test!
rocketjoe_jupyter_1 | 2: def test_rocketjoe_execute_request_2(benchmark) -> None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py::test_rocketjoe_complete_request_1
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:100: PytestBenchmarkWarning: Benchmark fixture was not used at all in this test!
rocketjoe_jupyter_1 | 2: def test_rocketjoe_complete_request_1(benchmark) -> None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py::test_rocketjoe_complete_request_2
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:110: PytestBenchmarkWarning: Benchmark fixture was not used at all in this test!
rocketjoe_jupyter_1 | 2: def test_rocketjoe_complete_request_2(benchmark) -> None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py::test_rocketjoe_is_complete_request_1
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:120: PytestBenchmarkWarning: Benchmark fixture was not used at all in this test!
rocketjoe_jupyter_1 | 2: def test_rocketjoe_is_complete_request_1(benchmark) -> None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py::test_rocketjoe_is_complete_request_2
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:130: PytestBenchmarkWarning: Benchmark fixture was not used at all in this test!
rocketjoe_jupyter_1 | 2: def test_rocketjoe_is_complete_request_2(benchmark) -> None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: -- Docs: https://docs.pytest.org/en/latest/warnings.html
rocketjoe_jupyter_1 | 2:
------------------------------------------------------------------------------------------- benchmark: 7 tests ------------------------------------------------------------------------------------------
rocketjoe_jupyter_1 | 2: Name (time in ms) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations
rocketjoe_jupyter_1 | 2: ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
rocketjoe_jupyter_1 | 2: test_ipykernel_kernel_info_request 1.9172 (1.0) 3.0398 (1.0) 2.2318 (1.0) 0.1916 (1.06) 2.2231 (1.0) 0.3031 (1.80) 125;1 448.0730 (1.0) 324 1
rocketjoe_jupyter_1 | 2: test_ipykernel_is_complete_request_1 2.0113 (1.05) 4.5315 (1.49) 2.4260 (1.09) 0.1854 (1.02) 2.4283 (1.09) 0.1844 (1.10) 71;9 412.2004 (0.92) 383 1
rocketjoe_jupyter_1 | 2: test_ipykernel_is_complete_request_2 2.0194 (1.05) 4.2549 (1.40) 2.3828 (1.07) 0.1812 (1.0) 2.3648 (1.06) 0.1682 (1.0) 65;15 419.6740 (0.94) 366 1
rocketjoe_jupyter_1 | 2: test_ipykernel_execute_request_2 9.1332 (4.76) 23.2475 (7.65) 11.0938 (4.97) 1.7810 (9.83) 10.5987 (4.77) 0.5520 (3.28) 19;24 90.1405 (0.20) 181 1
rocketjoe_jupyter_1 | 2: test_ipykernel_execute_request_1 9.2501 (4.82) 16.2730 (5.35) 11.1673 (5.00) 1.5081 (8.32) 10.6921 (4.81) 0.8051 (4.79) 17;15 89.5474 (0.20) 115 1
rocketjoe_jupyter_1 | 2: test_ipykernel_complete_request_2 23.8228 (12.43) 32.0697 (10.55) 25.7170 (11.52) 3.5587 (19.64) 24.3236 (10.94) 2.3481 (13.96) 1;1 38.8848 (0.09) 5 1
rocketjoe_jupyter_1 | 2: test_ipykernel_complete_request_1 24.3144 (12.68) 25.3076 (8.33) 24.6578 (11.05) 0.4088 (2.26) 24.5386 (11.04) 0.5782 (3.44) 1;0 40.5551 (0.09) 5 1
rocketjoe_jupyter_1 | 2: ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Legend:
rocketjoe_jupyter_1 | 2: Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile.
rocketjoe_jupyter_1 | 2: OPS: Operations Per Second, computed as 1 / Mean
rocketjoe_jupyter_1 | 2: =========================== short test summary info ============================
rocketjoe_jupyter_1 | 2: FAILED test/test_jupyter_kernel.py::test_rocketjoe_kernel_info_request - Time...
rocketjoe_jupyter_1 | 2: FAILED test/test_jupyter_kernel.py::test_rocketjoe_execute_request_1 - Timeou...
rocketjoe_jupyter_1 | 2: FAILED test/test_jupyter_kernel.py::test_rocketjoe_execute_request_2 - Timeou...
rocketjoe_jupyter_1 | 2: FAILED test/test_jupyter_kernel.py::test_rocketjoe_complete_request_1 - Timeo...
rocketjoe_jupyter_1 | 2: FAILED test/test_jupyter_kernel.py::test_rocketjoe_complete_request_2 - Timeo...
rocketjoe_jupyter_1 | 2: FAILED test/test_jupyter_kernel.py::test_rocketjoe_is_complete_request_1 - Ti...
rocketjoe_jupyter_1 | 2: FAILED test/test_jupyter_kernel.py::test_rocketjoe_is_complete_request_2 - Ti...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_clear_output - ...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_completion - Ru...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_display_data - ...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_error - Runtime...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_execute_result
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_execute_stderr
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_execute_stdout
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_history - Runti...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_inspect - Runti...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_is_complete - R...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_kernel_info - R...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_pager - Runtime...
rocketjoe_jupyter_1 | 2: ======= 7 failed, 7 passed, 12 warnings, 12 errors in 534.01s (0:08:54) ========
rocketjoe_jupyter_1 | 2/2 Test #2: test_jupyter_kernel.py ...........***Failed 534.43 sec
rocketjoe_jupyter_1 |
rocketjoe_jupyter_1 | 0% tests passed, 2 tests failed out of 2
rocketjoe_jupyter_1 |
rocketjoe_jupyter_1 | Total Test time (real) = 534.43 sec
rocketjoe_jupyter_1 |
rocketjoe_jupyter_1 | The following tests FAILED:
rocketjoe_jupyter_1 | 1 - test_storage (Not Run)
rocketjoe_jupyter_1 | 2 - test_jupyter_kernel.py (Failed)
rocketjoe_jupyter_1 | Errors while running CTest
docker_rocketjoe_jupyter_1 exited with code 8
Raw
gistfile2.txt
rocketjoe_jupyter_1 | UpdateCTestConfiguration from :/app/build/DartConfiguration.tcl
rocketjoe_jupyter_1 | UpdateCTestConfiguration from :/app/build/DartConfiguration.tcl
rocketjoe_jupyter_1 | Test project /app/build
rocketjoe_jupyter_1 | Constructing a list of tests
rocketjoe_jupyter_1 | Done constructing a list of tests
rocketjoe_jupyter_1 | Updating test list for fixtures
rocketjoe_jupyter_1 | Added 0 tests to meet fixture requirements
rocketjoe_jupyter_1 | Checking test dependency graph...
rocketjoe_jupyter_1 | Checking test dependency graph end
rocketjoe_jupyter_1 | test 1
rocketjoe_jupyter_1 | Start 1: test_storage
rocketjoe_jupyter_1 | Could not find executable test_storage
rocketjoe_jupyter_1 | Looked in the following places:
rocketjoe_jupyter_1 | test_storage
rocketjoe_jupyter_1 | test_storage
rocketjoe_jupyter_1 | Release/test_storage
rocketjoe_jupyter_1 | Release/test_storage
rocketjoe_jupyter_1 | Debug/test_storage
rocketjoe_jupyter_1 | Debug/test_storage
rocketjoe_jupyter_1 | MinSizeRel/test_storage
rocketjoe_jupyter_1 | MinSizeRel/test_storage
rocketjoe_jupyter_1 | RelWithDebInfo/test_storage
rocketjoe_jupyter_1 | RelWithDebInfo/test_storage
rocketjoe_jupyter_1 | Deployment/test_storage
rocketjoe_jupyter_1 | Deployment/test_storage
rocketjoe_jupyter_1 | Development/test_storage
rocketjoe_jupyter_1 | Development/test_storage
rocketjoe_jupyter_1 |
rocketjoe_jupyter_1 | 1: Test command:
rocketjoe_jupyter_1 | Unable to find executable: test_storage
rocketjoe_jupyter_1 | 1/2 Test #1: test_storage .....................***Not Run 0.00 sec
rocketjoe_jupyter_1 | test 2
rocketjoe_jupyter_1 | Start 2: test_jupyter_kernel.py
rocketjoe_jupyter_1 |
rocketjoe_jupyter_1 | 2: Test command: /usr/local/bin/pytest "/app/build/apps/rocketjoed/test/test_jupyter_kernel.py"
rocketjoe_jupyter_1 | 2: Environment variables:
rocketjoe_jupyter_1 | 2: JUPYTER_PATH=$JUPYTER_PATH:/app/build
rocketjoe_jupyter_1 | 2: Test timeout computed to be: 10000000
rocketjoe_jupyter_1 | 2: ============================= test session starts ==============================
rocketjoe_jupyter_1 | 2: platform linux -- Python 3.7.3, pytest-5.4.2, py-1.8.2, pluggy-0.13.1
rocketjoe_jupyter_1 | 2: benchmark: 3.2.3 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000)
rocketjoe_jupyter_1 | 2: rootdir: /app/build/apps/rocketjoed
rocketjoe_jupyter_1 | 2: plugins: benchmark-3.2.3, xprocess-0.13.1
rocketjoe_jupyter_1 | 2: collected 26 items
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py EEEEEEEEEEEE.F.F.F.F.F.F.F [100%]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: ==================================== ERRORS ====================================
rocketjoe_jupyter_1 | 2: ___________ ERROR at setup of RocketJoePythonTests.test_clear_output ___________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fdb68590ac8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: ---------------------------- Captured stdout setup -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 12:49:37.515] [__default__] [info] [pid 14 tid 14]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 12:49:37.515] [__default__] [info] [pid 14 tid 14] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /tmp/tmpumxz1_sc.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:49:37.515] [__default__] [info] [pid 14 tid 14] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 12:49:37.515] [__default__] [info] [pid 14 tid 14] construct process pool
rocketjoe_jupyter_1 | 2: [2020-06-25 12:49:37.551] [__default__] [info] [pid 14 tid 14] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 12:49:37.551] [__default__] [info] [pid 14 tid 14] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 12:49:37.551] [__default__] [info] [pid 14 tid 14] jupyter connection path : /tmp/tmpumxz1_sc.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:49:37.551] [__default__] [info] [pid 14 tid 14] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 12:49:39.037] [__default__] [info] [pid 14 tid 14] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ---------------------------- Captured stderr setup -----------------------------
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=14)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002b0 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x122cba7)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002b0 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 __libc_start_main <null> (libc.so.6+0x2409a)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x5643fcc214e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=21, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=14)
rocketjoe_jupyter_1 | 2: Read of size 1 at 0x7b0800001010 by main thread:
rocketjoe_jupyter_1 | 2: #0 strncpy <null> (libtsan.so.0+0x2b783)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0x81f63)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:27 (rocketjoed+0x16742fa)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x1358323)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x109da91)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x1097584)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0800001010 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1227bb6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Location is heap block of size 20 at 0x7b0800001000 allocated by thread T1:
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1227bb6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x5643fcc214e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=21, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2b783) in strncpy
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=14)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002d0 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x122cba7)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002d0 by main thread:
rocketjoe_jupyter_1 | 2: [failed to restore the stack]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x5643fcc214e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=21, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=14)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000810 by main thread:
rocketjoe_jupyter_1 | 2: #0 open64 <null> (libtsan.so.0+0x2de81)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0xdf106)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:34 (rocketjoed+0x1674599)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x1358323)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x109da91)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x1097584)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000810 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x122cba7)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x5643fcc214e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=21, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2de81) in __interceptor_open64
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 58103,
rocketjoe_jupyter_1 | 2: "hb_port": 35683,
rocketjoe_jupyter_1 | 2: "iopub_port": 34123,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "kernel_name": "rocketjoe",
rocketjoe_jupyter_1 | 2: "key": "68ddfdd2-50ce0bc6283f4e8fbd412b7d",
rocketjoe_jupyter_1 | 2: "shell_port": 35891,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 48349,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ____________ ERROR at setup of RocketJoePythonTests.test_completion ____________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fdb68590ac8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: ___________ ERROR at setup of RocketJoePythonTests.test_display_data ___________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fdb68590ac8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: ______________ ERROR at setup of RocketJoePythonTests.test_error _______________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fdb68590ac8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: __________ ERROR at setup of RocketJoePythonTests.test_execute_result __________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fdb68590ac8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: __________ ERROR at setup of RocketJoePythonTests.test_execute_stderr __________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fdb68590ac8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: __________ ERROR at setup of RocketJoePythonTests.test_execute_stdout __________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fdb68590ac8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: _____________ ERROR at setup of RocketJoePythonTests.test_history ______________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fdb68590ac8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: _____________ ERROR at setup of RocketJoePythonTests.test_inspect ______________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fdb68590ac8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: ___________ ERROR at setup of RocketJoePythonTests.test_is_complete ____________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fdb68590ac8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: ___________ ERROR at setup of RocketJoePythonTests.test_kernel_info ____________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fdb68590ac8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: ______________ ERROR at setup of RocketJoePythonTests.test_pager _______________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fdb68590ac8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: =================================== FAILURES ===================================
rocketjoe_jupyter_1 | 2: ______________________ test_rocketjoe_kernel_info_request ______________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fdb65b2b198>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7fdb65bd4d30>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7fdb65bded90>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7fdb65ba8b38>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_kernel_info_request(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:71:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fdb65b2b198>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 12:50:44.780] [__default__] [info] [pid 46 tid 46]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 12:50:44.781] [__default__] [info] [pid 46 tid 46] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-fea52529-71c00ce8c786501f86cf321a.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:50:44.781] [__default__] [info] [pid 46 tid 46] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 12:50:44.781] [__default__] [info] [pid 46 tid 46] construct process pool
rocketjoe_jupyter_1 | 2: [2020-06-25 12:50:44.808] [__default__] [info] [pid 46 tid 46] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 12:50:44.808] [__default__] [info] [pid 46 tid 46] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 12:50:44.808] [__default__] [info] [pid 46 tid 46] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-fea52529-71c00ce8c786501f86cf321a.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:50:44.808] [__default__] [info] [pid 46 tid 46] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 12:50:45.574] [__default__] [info] [pid 46 tid 46] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=46)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002b0 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x122cba7)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002b0 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 __libc_start_main <null> (libc.so.6+0x2409a)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x56039cb744e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=48, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=46)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002d0 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x122cba7)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002d0 by main thread:
rocketjoe_jupyter_1 | 2: [failed to restore the stack]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x56039cb744e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=48, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=46)
rocketjoe_jupyter_1 | 2: Read of size 1 at 0x7b0800001010 by main thread:
rocketjoe_jupyter_1 | 2: #0 strncpy <null> (libtsan.so.0+0x2b783)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0x81f63)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:27 (rocketjoed+0x16742fa)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x1358323)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x109da91)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x1097584)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0800001010 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1227bb6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Location is heap block of size 20 at 0x7b0800001000 allocated by thread T1:
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1227bb6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x56039cb744e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=48, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2b783) in strncpy
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=46)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000810 by main thread:
rocketjoe_jupyter_1 | 2: #0 open64 <null> (libtsan.so.0+0x2de81)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0xdf106)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:34 (rocketjoed+0x1674599)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x1358323)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x109da91)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x1097584)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000810 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x122cba7)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x56039cb744e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=48, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2de81) in __interceptor_open64
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 53195,
rocketjoe_jupyter_1 | 2: "hb_port": 48969,
rocketjoe_jupyter_1 | 2: "iopub_port": 43353,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "68373fed-ccfe1efbb53bb374e4f7ffdb",
rocketjoe_jupyter_1 | 2: "shell_port": 59639,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 58019,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: _______________________ test_rocketjoe_execute_request_1 _______________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fdb65b26668>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7fdb65bd4d30>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7fdb651e3bf8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7fdb65c88c18>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_execute_request_1(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:81:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fdb65b26668>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 12:51:51.840] [__default__] [info] [pid 70 tid 70]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 12:51:51.840] [__default__] [info] [pid 70 tid 70] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-f6454796-d06ada88ccc8e09cc15af2b9.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:51:51.840] [__default__] [info] [pid 70 tid 70] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 12:51:51.840] [__default__] [info] [pid 70 tid 70] construct process pool
rocketjoe_jupyter_1 | 2: [2020-06-25 12:51:51.867] [__default__] [info] [pid 70 tid 70] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 12:51:51.867] [__default__] [info] [pid 70 tid 70] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 12:51:51.867] [__default__] [info] [pid 70 tid 70] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-f6454796-d06ada88ccc8e09cc15af2b9.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:51:51.867] [__default__] [info] [pid 70 tid 70] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 12:51:52.646] [__default__] [info] [pid 70 tid 70] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=70)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002b0 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x122cba7)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002b0 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 unsigned short const& boost::any_cast<unsigned short const&>(boost::any const&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/any.hpp:298 (rocketjoed+0x1096f25)
rocketjoe_jupyter_1 | 2: #3 unsigned short const& boost::program_options::variable_value::as<unsigned short>() const /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/program_options/variables_map.hpp:69 (rocketjoed+0x1096f25)
rocketjoe_jupyter_1 | 2: #4 main ../apps/rocketjoed/main.cpp:102 (rocketjoed+0x1096f25)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x563aa31204e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=72, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=70)
rocketjoe_jupyter_1 | 2: Read of size 1 at 0x7b0800001010 by main thread:
rocketjoe_jupyter_1 | 2: #0 strncpy <null> (libtsan.so.0+0x2b783)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0x81f63)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:27 (rocketjoed+0x16742fa)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x1358323)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x109da91)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x1097584)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0800001010 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1227bb6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Location is heap block of size 20 at 0x7b0800001000 allocated by thread T1:
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1227bb6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x563aa31204e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=72, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2b783) in strncpy
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=70)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000810 by main thread:
rocketjoe_jupyter_1 | 2: #0 open64 <null> (libtsan.so.0+0x2de81)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0xdf106)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:34 (rocketjoed+0x1674599)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x1358323)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x109da91)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x1097584)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000810 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x122cba7)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x563aa31204e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=72, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2de81) in __interceptor_open64
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 54053,
rocketjoe_jupyter_1 | 2: "hb_port": 44807,
rocketjoe_jupyter_1 | 2: "iopub_port": 35987,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "af59aaee-8a9e38fe156091d1f7e14ad5",
rocketjoe_jupyter_1 | 2: "shell_port": 36409,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 60741,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=70)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400001890 by thread T4:
rocketjoe_jupyter_1 | 2: #0 accept4 <null> (libtsan.so.0+0x392d3)
rocketjoe_jupyter_1 | 2: #1 zmq::tcp_listener_t::accept() /home/conan/.conan/data/zmq/4.3.2/bincrafters/stable/build/9d43b0a6dcf99be58f9186c18969d7b3c0292752/sources_subfolder/src/tcp_listener.cpp:205 (rocketjoed+0x1774b23)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400001890 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:196 (rocketjoed+0x10977fc)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T4 'ZMQbg/IO/0' (tid=77, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 zmq::thread_t::start(void (*)(void*), void*, char const*) /home/conan/.conan/data/zmq/4.3.2/bincrafters/stable/build/9d43b0a6dcf99be58f9186c18969d7b3c0292752/sources_subfolder/src/thread.cpp:236 (rocketjoed+0x177538f)
rocketjoe_jupyter_1 | 2: #2 zmq::socket_t::socket_t(zmq::context_t&, zmq::socket_type) /root/.conan/data/cppzmq/4.6.0/bincrafters/stable/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/zmq.hpp:1573 (rocketjoed+0x134f682)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:105 (rocketjoed+0x134f682)
rocketjoe_jupyter_1 | 2: #4 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:300 (rocketjoed+0x13585c0)
rocketjoe_jupyter_1 | 2: #5 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x109da91)
rocketjoe_jupyter_1 | 2: #6 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x1097584)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x392d3) in __interceptor_accept4
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: _______________________ test_rocketjoe_execute_request_2 _______________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fdb65c82860>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7fdb65bd4d30>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7fdb65bde400>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7fdb65b705f8>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_execute_request_2(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:91:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fdb65c82860>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 12:52:59.561] [__default__] [info] [pid 94 tid 94]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 12:52:59.561] [__default__] [info] [pid 94 tid 94] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-c30609c3-22488d543051247762aefd70.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:52:59.561] [__default__] [info] [pid 94 tid 94] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 12:52:59.561] [__default__] [info] [pid 94 tid 94] construct process pool
rocketjoe_jupyter_1 | 2: [2020-06-25 12:52:59.588] [__default__] [info] [pid 94 tid 94] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 12:52:59.589] [__default__] [info] [pid 94 tid 94] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 12:52:59.589] [__default__] [info] [pid 94 tid 94] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-c30609c3-22488d543051247762aefd70.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:52:59.589] [__default__] [info] [pid 94 tid 94] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 12:53:00.406] [__default__] [info] [pid 94 tid 94] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=94)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002b0 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x122cba7)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002b0 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 unsigned short const& boost::any_cast<unsigned short const&>(boost::any const&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/any.hpp:298 (rocketjoed+0x1096f25)
rocketjoe_jupyter_1 | 2: #3 unsigned short const& boost::program_options::variable_value::as<unsigned short>() const /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/program_options/variables_map.hpp:69 (rocketjoed+0x1096f25)
rocketjoe_jupyter_1 | 2: #4 main ../apps/rocketjoed/main.cpp:102 (rocketjoed+0x1096f25)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x563597c784e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=96, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=94)
rocketjoe_jupyter_1 | 2: Read of size 1 at 0x7b0800001010 by main thread:
rocketjoe_jupyter_1 | 2: #0 strncpy <null> (libtsan.so.0+0x2b783)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0x81f63)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:27 (rocketjoed+0x16742fa)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x1358323)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x109da91)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x1097584)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0800001010 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1227bb6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Location is heap block of size 20 at 0x7b0800001000 allocated by thread T1:
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1227bb6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x563597c784e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=96, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2b783) in strncpy
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=94)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000810 by main thread:
rocketjoe_jupyter_1 | 2: #0 open64 <null> (libtsan.so.0+0x2de81)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0xdf106)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:34 (rocketjoed+0x1674599)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x1358323)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x109da91)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x1097584)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000810 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x122cba7)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x563597c784e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=96, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2de81) in __interceptor_open64
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 55021,
rocketjoe_jupyter_1 | 2: "hb_port": 35513,
rocketjoe_jupyter_1 | 2: "iopub_port": 41115,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "98bd8481-9565d9e4ce66d671a5c58c0a",
rocketjoe_jupyter_1 | 2: "shell_port": 41009,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 52265,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=94)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400001890 by thread T4:
rocketjoe_jupyter_1 | 2: #0 accept4 <null> (libtsan.so.0+0x392d3)
rocketjoe_jupyter_1 | 2: #1 zmq::tcp_listener_t::accept() /home/conan/.conan/data/zmq/4.3.2/bincrafters/stable/build/9d43b0a6dcf99be58f9186c18969d7b3c0292752/sources_subfolder/src/tcp_listener.cpp:205 (rocketjoed+0x1774b23)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400001890 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:196 (rocketjoed+0x10977fc)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T4 'ZMQbg/IO/0' (tid=101, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 zmq::thread_t::start(void (*)(void*), void*, char const*) /home/conan/.conan/data/zmq/4.3.2/bincrafters/stable/build/9d43b0a6dcf99be58f9186c18969d7b3c0292752/sources_subfolder/src/thread.cpp:236 (rocketjoed+0x177538f)
rocketjoe_jupyter_1 | 2: #2 zmq::socket_t::socket_t(zmq::context_t&, zmq::socket_type) /root/.conan/data/cppzmq/4.6.0/bincrafters/stable/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/zmq.hpp:1573 (rocketjoed+0x134f682)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:105 (rocketjoed+0x134f682)
rocketjoe_jupyter_1 | 2: #4 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:300 (rocketjoed+0x13585c0)
rocketjoe_jupyter_1 | 2: #5 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x109da91)
rocketjoe_jupyter_1 | 2: #6 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x1097584)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x392d3) in __interceptor_accept4
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ______________________ test_rocketjoe_complete_request_1 _______________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fdb68515e80>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7fdb65bd4d30>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7fdb65b866a8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7fdb65b48ba8>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_complete_request_1(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:101:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fdb68515e80>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 12:54:06.154] [__default__] [info] [pid 118 tid 118]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 12:54:06.154] [__default__] [info] [pid 118 tid 118] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-2658bd76-3c776217dbd07ec330ff9451.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:54:06.154] [__default__] [info] [pid 118 tid 118] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 12:54:06.154] [__default__] [info] [pid 118 tid 118] construct process pool
rocketjoe_jupyter_1 | 2: [2020-06-25 12:54:06.181] [__default__] [info] [pid 118 tid 118] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 12:54:06.181] [__default__] [info] [pid 118 tid 118] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 12:54:06.181] [__default__] [info] [pid 118 tid 118] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-2658bd76-3c776217dbd07ec330ff9451.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:54:06.181] [__default__] [info] [pid 118 tid 118] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 12:54:06.952] [__default__] [info] [pid 118 tid 118] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=118)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002b0 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x122cba7)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002b0 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 __libc_start_main <null> (libc.so.6+0x2409a)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x557833e974e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=120, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=118)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002d0 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x122cba7)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002d0 by main thread:
rocketjoe_jupyter_1 | 2: [failed to restore the stack]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x557833e974e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=120, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=118)
rocketjoe_jupyter_1 | 2: Read of size 1 at 0x7b0800001010 by main thread:
rocketjoe_jupyter_1 | 2: #0 strncpy <null> (libtsan.so.0+0x2b783)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0x81f63)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:27 (rocketjoed+0x16742fa)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x1358323)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x109da91)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x1097584)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0800001010 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1227bb6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Location is heap block of size 20 at 0x7b0800001000 allocated by thread T1:
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1227bb6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x557833e974e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=120, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2b783) in strncpy
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=118)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000810 by main thread:
rocketjoe_jupyter_1 | 2: #0 open64 <null> (libtsan.so.0+0x2de81)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0xdf106)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:34 (rocketjoed+0x1674599)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x1358323)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x109da91)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x1097584)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000810 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x122cba7)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x557833e974e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=120, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2de81) in __interceptor_open64
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 52809,
rocketjoe_jupyter_1 | 2: "hb_port": 53219,
rocketjoe_jupyter_1 | 2: "iopub_port": 54103,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "428858a5-23deef3e2b8669249ff026aa",
rocketjoe_jupyter_1 | 2: "shell_port": 36731,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 57425,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ______________________ test_rocketjoe_complete_request_2 _______________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fdb65bbc080>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7fdb65bd4d30>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7fdb65274c80>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7fdb65ba85c0>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_complete_request_2(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:111:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fdb65bbc080>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 12:55:12.696] [__default__] [info] [pid 142 tid 142]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 12:55:12.696] [__default__] [info] [pid 142 tid 142] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-be526179-819f10934b26d0c65ef02695.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:55:12.696] [__default__] [info] [pid 142 tid 142] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 12:55:12.696] [__default__] [info] [pid 142 tid 142] construct process pool
rocketjoe_jupyter_1 | 2: [2020-06-25 12:55:12.723] [__default__] [info] [pid 142 tid 142] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 12:55:12.723] [__default__] [info] [pid 142 tid 142] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 12:55:12.723] [__default__] [info] [pid 142 tid 142] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-be526179-819f10934b26d0c65ef02695.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:55:12.723] [__default__] [info] [pid 142 tid 142] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 12:55:13.507] [__default__] [info] [pid 142 tid 142] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=142)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002b0 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x122cba7)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002b0 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 unsigned short const& boost::any_cast<unsigned short const&>(boost::any const&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/any.hpp:298 (rocketjoed+0x1096f25)
rocketjoe_jupyter_1 | 2: #3 unsigned short const& boost::program_options::variable_value::as<unsigned short>() const /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/program_options/variables_map.hpp:69 (rocketjoed+0x1096f25)
rocketjoe_jupyter_1 | 2: #4 main ../apps/rocketjoed/main.cpp:102 (rocketjoed+0x1096f25)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x562cf76fe4e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=144, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=142)
rocketjoe_jupyter_1 | 2: Read of size 1 at 0x7b0800001010 by main thread:
rocketjoe_jupyter_1 | 2: #0 strncpy <null> (libtsan.so.0+0x2b783)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0x81f63)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:27 (rocketjoed+0x16742fa)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x1358323)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x109da91)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x1097584)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0800001010 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1227bb6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Location is heap block of size 20 at 0x7b0800001000 allocated by thread T1:
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1227bb6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x562cf76fe4e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=144, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2b783) in strncpy
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=142)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000810 by main thread:
rocketjoe_jupyter_1 | 2: #0 open64 <null> (libtsan.so.0+0x2de81)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0xdf106)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:34 (rocketjoed+0x1674599)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x1358323)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x109da91)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x1097584)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000810 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x122cba7)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x562cf76fe4e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=144, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2de81) in __interceptor_open64
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 34371,
rocketjoe_jupyter_1 | 2: "hb_port": 51707,
rocketjoe_jupyter_1 | 2: "iopub_port": 47967,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "c62738aa-3e1d0f7cd76d52c4f5566ef1",
rocketjoe_jupyter_1 | 2: "shell_port": 53405,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 54633,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: _____________________ test_rocketjoe_is_complete_request_1 _____________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fdb65b13eb8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7fdb65bd4d30>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7fdb65131268>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7fdb6527d940>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_is_complete_request_1(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:121:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fdb65b13eb8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 12:56:19.295] [__default__] [info] [pid 166 tid 166]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 12:56:19.295] [__default__] [info] [pid 166 tid 166] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-88b06bf0-d92637e6090042995e044aa6.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:56:19.296] [__default__] [info] [pid 166 tid 166] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 12:56:19.296] [__default__] [info] [pid 166 tid 166] construct process pool
rocketjoe_jupyter_1 | 2: [2020-06-25 12:56:19.323] [__default__] [info] [pid 166 tid 166] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 12:56:19.323] [__default__] [info] [pid 166 tid 166] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 12:56:19.323] [__default__] [info] [pid 166 tid 166] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-88b06bf0-d92637e6090042995e044aa6.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:56:19.323] [__default__] [info] [pid 166 tid 166] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 12:56:20.091] [__default__] [info] [pid 166 tid 166] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=166)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002b0 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x122cba7)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002b0 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 __libc_start_main <null> (libc.so.6+0x2409a)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x55a817fd54e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=168, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=166)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002d0 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x122cba7)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002d0 by main thread:
rocketjoe_jupyter_1 | 2: [failed to restore the stack]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x55a817fd54e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=168, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=166)
rocketjoe_jupyter_1 | 2: Read of size 1 at 0x7b0800001010 by main thread:
rocketjoe_jupyter_1 | 2: #0 strncpy <null> (libtsan.so.0+0x2b783)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0x81f63)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:27 (rocketjoed+0x16742fa)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x1358323)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x109da91)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x1097584)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0800001010 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1227bb6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Location is heap block of size 20 at 0x7b0800001000 allocated by thread T1:
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1227bb6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x55a817fd54e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=168, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2b783) in strncpy
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=166)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000810 by main thread:
rocketjoe_jupyter_1 | 2: #0 open64 <null> (libtsan.so.0+0x2de81)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0xdf106)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:34 (rocketjoed+0x1674599)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x1358323)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x109da91)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x1097584)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000810 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x122cba7)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x55a817fd54e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=168, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2de81) in __interceptor_open64
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 40639,
rocketjoe_jupyter_1 | 2: "hb_port": 52059,
rocketjoe_jupyter_1 | 2: "iopub_port": 55509,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "fc0efecc-5726548ca3c59fe4fb0b71d3",
rocketjoe_jupyter_1 | 2: "shell_port": 33963,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 35917,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=166)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000018a0 by thread T4:
rocketjoe_jupyter_1 | 2: #0 accept4 <null> (libtsan.so.0+0x392d3)
rocketjoe_jupyter_1 | 2: #1 zmq::tcp_listener_t::accept() /home/conan/.conan/data/zmq/4.3.2/bincrafters/stable/build/9d43b0a6dcf99be58f9186c18969d7b3c0292752/sources_subfolder/src/tcp_listener.cpp:205 (rocketjoed+0x1774b23)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000018a0 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:196 (rocketjoed+0x10977fc)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T4 'ZMQbg/IO/0' (tid=173, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 zmq::thread_t::start(void (*)(void*), void*, char const*) /home/conan/.conan/data/zmq/4.3.2/bincrafters/stable/build/9d43b0a6dcf99be58f9186c18969d7b3c0292752/sources_subfolder/src/thread.cpp:236 (rocketjoed+0x177538f)
rocketjoe_jupyter_1 | 2: #2 zmq::socket_t::socket_t(zmq::context_t&, zmq::socket_type) /root/.conan/data/cppzmq/4.6.0/bincrafters/stable/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/zmq.hpp:1573 (rocketjoed+0x134f682)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:105 (rocketjoed+0x134f682)
rocketjoe_jupyter_1 | 2: #4 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:300 (rocketjoed+0x13585c0)
rocketjoe_jupyter_1 | 2: #5 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x109da91)
rocketjoe_jupyter_1 | 2: #6 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x1097584)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x392d3) in __interceptor_accept4
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: _____________________ test_rocketjoe_is_complete_request_2 _____________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fdb65b26b38>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7fdb65bd4d30>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7fdb651a6f28>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7fdb65b262b0>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_is_complete_request_2(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:131:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fdb65b26b38>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 12:57:25.601] [__default__] [info] [pid 190 tid 190]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 12:57:25.601] [__default__] [info] [pid 190 tid 190] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-8bb4c89e-042648e6d58f3680e27b710c.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:57:25.602] [__default__] [info] [pid 190 tid 190] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 12:57:25.602] [__default__] [info] [pid 190 tid 190] construct process pool
rocketjoe_jupyter_1 | 2: [2020-06-25 12:57:25.635] [__default__] [info] [pid 190 tid 190] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 12:57:25.635] [__default__] [info] [pid 190 tid 190] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 12:57:25.635] [__default__] [info] [pid 190 tid 190] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-8bb4c89e-042648e6d58f3680e27b710c.json
rocketjoe_jupyter_1 | 2: [2020-06-25 12:57:25.635] [__default__] [info] [pid 190 tid 190] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 12:57:26.593] [__default__] [info] [pid 190 tid 190] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=190)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002b0 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x122cba7)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002b0 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 __libc_start_main <null> (libc.so.6+0x2409a)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x55e088cf14e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=192, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=190)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002d0 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x122cba7)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002d0 by main thread:
rocketjoe_jupyter_1 | 2: [failed to restore the stack]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x55e088cf14e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=192, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=190)
rocketjoe_jupyter_1 | 2: Read of size 1 at 0x7b0800001010 by main thread:
rocketjoe_jupyter_1 | 2: #0 strncpy <null> (libtsan.so.0+0x2b783)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0x81f63)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:27 (rocketjoed+0x16742fa)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x1358323)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x109da91)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x1097584)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0800001010 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1227bb6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Location is heap block of size 20 at 0x7b0800001000 allocated by thread T1:
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0x1227bb6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x55e088cf14e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=192, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2b783) in strncpy
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=190)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000810 by main thread:
rocketjoe_jupyter_1 | 2: #0 open64 <null> (libtsan.so.0+0x2de81)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0xdf106)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:34 (rocketjoed+0x1674599)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:293 (rocketjoed+0x1358323)
rocketjoe_jupyter_1 | 2: #4 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x109da91)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x1097584)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000810 by thread T1 (mutexes: write M87):
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::fmt_helper::pad2(int, fmt::v6::basic_memory_buffer<char, 250ul, std::allocator<char> >&) <null> (rocketjoed+0x122cba7)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M87 (0x55e088cf14e0) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0x12253e1)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=192, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:63 (rocketjoed+0x10961b9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2de81) in __interceptor_open64
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 42907,
rocketjoe_jupyter_1 | 2: "hb_port": 47877,
rocketjoe_jupyter_1 | 2: "iopub_port": 32819,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "f6c2bb9d-2d3d76476aa2347297c8abc6",
rocketjoe_jupyter_1 | 2: "shell_port": 35151,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 45917,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=190)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000018a0 by thread T4:
rocketjoe_jupyter_1 | 2: #0 accept4 <null> (libtsan.so.0+0x392d3)
rocketjoe_jupyter_1 | 2: #1 zmq::tcp_listener_t::accept() /home/conan/.conan/data/zmq/4.3.2/bincrafters/stable/build/9d43b0a6dcf99be58f9186c18969d7b3c0292752/sources_subfolder/src/tcp_listener.cpp:205 (rocketjoed+0x1774b23)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000018a0 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:196 (rocketjoed+0x10977fc)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T4 'ZMQbg/IO/0' (tid=197, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 zmq::thread_t::start(void (*)(void*), void*, char const*) /home/conan/.conan/data/zmq/4.3.2/bincrafters/stable/build/9d43b0a6dcf99be58f9186c18969d7b3c0292752/sources_subfolder/src/thread.cpp:236 (rocketjoed+0x177538f)
rocketjoe_jupyter_1 | 2: #2 zmq::socket_t::socket_t(zmq::context_t&, zmq::socket_type) /root/.conan/data/cppzmq/4.6.0/bincrafters/stable/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/zmq.hpp:1573 (rocketjoed+0x134f682)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:105 (rocketjoed+0x134f682)
rocketjoe_jupyter_1 | 2: #4 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:300 (rocketjoed+0x13585c0)
rocketjoe_jupyter_1 | 2: #5 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0x109da91)
rocketjoe_jupyter_1 | 2: #6 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0x1097584)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x392d3) in __interceptor_accept4
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: =============================== warnings summary ===============================
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/nose/importer.py:12
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/nose/importer.py:12: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
rocketjoe_jupyter_1 | 2: from imp import find_module, load_module, acquire_lock, release_lock
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/messagespec.py:52
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/messagespec.py:52: DeprecationWarning: Traits should be given as instances, not types (for example, `Int()`, not `Int`). Passing types is deprecated in traitlets 4.1.
rocketjoe_jupyter_1 | 2: payload = List(Dict)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/messagespec.py:59
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/messagespec.py:59: DeprecationWarning: Traits should be given as instances, not types (for example, `Int()`, not `Int`). Passing types is deprecated in traitlets 4.1.
rocketjoe_jupyter_1 | 2: traceback = List(Unicode)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/messagespec.py:67
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/messagespec.py:67: DeprecationWarning: Traits should be given as instances, not types (for example, `Int()`, not `Int`). Passing types is deprecated in traitlets 4.1.
rocketjoe_jupyter_1 | 2: args = List(Unicode)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/messagespec.py:78
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/messagespec.py:78: DeprecationWarning: Traits should be given as instances, not types (for example, `Int()`, not `Int`). Passing types is deprecated in traitlets 4.1.
rocketjoe_jupyter_1 | 2: matches = List(Unicode)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py::test_rocketjoe_kernel_info_request
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:70: PytestBenchmarkWarning: Benchmark fixture was not used at all in this test!
rocketjoe_jupyter_1 | 2: def test_rocketjoe_kernel_info_request(benchmark) -> None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py::test_rocketjoe_execute_request_1
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:80: PytestBenchmarkWarning: Benchmark fixture was not used at all in this test!
rocketjoe_jupyter_1 | 2: def test_rocketjoe_execute_request_1(benchmark) -> None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py::test_rocketjoe_execute_request_2
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:90: PytestBenchmarkWarning: Benchmark fixture was not used at all in this test!
rocketjoe_jupyter_1 | 2: def test_rocketjoe_execute_request_2(benchmark) -> None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py::test_rocketjoe_complete_request_1
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:100: PytestBenchmarkWarning: Benchmark fixture was not used at all in this test!
rocketjoe_jupyter_1 | 2: def test_rocketjoe_complete_request_1(benchmark) -> None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py::test_rocketjoe_complete_request_2
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:110: PytestBenchmarkWarning: Benchmark fixture was not used at all in this test!
rocketjoe_jupyter_1 | 2: def test_rocketjoe_complete_request_2(benchmark) -> None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py::test_rocketjoe_is_complete_request_1
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:120: PytestBenchmarkWarning: Benchmark fixture was not used at all in this test!
rocketjoe_jupyter_1 | 2: def test_rocketjoe_is_complete_request_1(benchmark) -> None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py::test_rocketjoe_is_complete_request_2
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:130: PytestBenchmarkWarning: Benchmark fixture was not used at all in this test!
rocketjoe_jupyter_1 | 2: def test_rocketjoe_is_complete_request_2(benchmark) -> None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: -- Docs: https://docs.pytest.org/en/latest/warnings.html
rocketjoe_jupyter_1 | 2:
------------------------------------------------------------------------------------------- benchmark: 7 tests ------------------------------------------------------------------------------------------
rocketjoe_jupyter_1 | 2: Name (time in ms) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations
rocketjoe_jupyter_1 | 2: ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
rocketjoe_jupyter_1 | 2: test_ipykernel_kernel_info_request 1.8482 (1.0) 2.8633 (1.0) 2.2950 (1.0) 0.1586 (1.0) 2.3027 (1.0) 0.1957 (1.0) 101;5 435.7362 (1.0) 326 1
rocketjoe_jupyter_1 | 2: test_ipykernel_is_complete_request_1 2.0776 (1.12) 3.0760 (1.07) 2.4238 (1.06) 0.1643 (1.04) 2.4138 (1.05) 0.2407 (1.23) 121;1 412.5739 (0.95) 368 1
rocketjoe_jupyter_1 | 2: test_ipykernel_is_complete_request_2 2.2280 (1.21) 7.7826 (2.72) 3.3607 (1.46) 1.0344 (6.52) 2.9738 (1.29) 0.9959 (5.09) 24;12 297.5594 (0.68) 151 1
rocketjoe_jupyter_1 | 2: test_ipykernel_execute_request_2 9.0775 (4.91) 17.8349 (6.23) 11.7454 (5.12) 1.6881 (10.64) 11.2497 (4.89) 1.6431 (8.40) 39;15 85.1400 (0.20) 169 1
rocketjoe_jupyter_1 | 2: test_ipykernel_execute_request_1 9.5362 (5.16) 18.5313 (6.47) 11.2207 (4.89) 1.6835 (10.61) 10.6437 (4.62) 0.8589 (4.39) 15;16 89.1213 (0.20) 118 1
rocketjoe_jupyter_1 | 2: test_ipykernel_complete_request_1 24.1354 (13.06) 25.1747 (8.79) 24.5197 (10.68) 0.4218 (2.66) 24.3302 (10.57) 0.5882 (3.01) 1;0 40.7835 (0.09) 5 1
rocketjoe_jupyter_1 | 2: test_ipykernel_complete_request_2 24.3888 (13.20) 32.1657 (11.23) 28.1817 (12.28) 3.3845 (21.33) 28.9632 (12.58) 5.9798 (30.55) 2;0 35.4841 (0.08) 5 1
rocketjoe_jupyter_1 | 2: ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Legend:
rocketjoe_jupyter_1 | 2: Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile.
rocketjoe_jupyter_1 | 2: OPS: Operations Per Second, computed as 1 / Mean
rocketjoe_jupyter_1 | 2: =========================== short test summary info ============================
rocketjoe_jupyter_1 | 2: FAILED test/test_jupyter_kernel.py::test_rocketjoe_kernel_info_request - Time...
rocketjoe_jupyter_1 | 2: FAILED test/test_jupyter_kernel.py::test_rocketjoe_execute_request_1 - Timeou...
rocketjoe_jupyter_1 | 2: FAILED test/test_jupyter_kernel.py::test_rocketjoe_execute_request_2 - Timeou...
rocketjoe_jupyter_1 | 2: FAILED test/test_jupyter_kernel.py::test_rocketjoe_complete_request_1 - Timeo...
rocketjoe_jupyter_1 | 2: FAILED test/test_jupyter_kernel.py::test_rocketjoe_complete_request_2 - Timeo...
rocketjoe_jupyter_1 | 2: FAILED test/test_jupyter_kernel.py::test_rocketjoe_is_complete_request_1 - Ti...
rocketjoe_jupyter_1 | 2: FAILED test/test_jupyter_kernel.py::test_rocketjoe_is_complete_request_2 - Ti...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_clear_output - ...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_completion - Ru...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_display_data - ...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_error - Runtime...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_execute_result
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_execute_stderr
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_execute_stdout
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_history - Runti...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_inspect - Runti...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_is_complete - R...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_kernel_info - R...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_pager - Runtime...
rocketjoe_jupyter_1 | 2: ======= 7 failed, 7 passed, 12 warnings, 12 errors in 534.22s (0:08:54) ========
rocketjoe_jupyter_1 | 2/2 Test #2: test_jupyter_kernel.py ...........***Failed 534.69 sec
rocketjoe_jupyter_1 |
rocketjoe_jupyter_1 | 0% tests passed, 2 tests failed out of 2
rocketjoe_jupyter_1 |
rocketjoe_jupyter_1 | Total Test time (real) = 534.69 sec
rocketjoe_jupyter_1 |
rocketjoe_jupyter_1 | The following tests FAILED:
rocketjoe_jupyter_1 | 1 - test_storage (Not Run)
rocketjoe_jupyter_1 | 2 - test_jupyter_kernel.py (Failed)
rocketjoe_jupyter_1 | Errors while running CTest
docker_rocketjoe_jupyter_1 exited with code 8
Raw
gistfile3.txt
rocketjoe_jupyter_1 | UpdateCTestConfiguration from :/app/build/DartConfiguration.tcl
rocketjoe_jupyter_1 | UpdateCTestConfiguration from :/app/build/DartConfiguration.tcl
rocketjoe_jupyter_1 | Test project /app/build
rocketjoe_jupyter_1 | Constructing a list of tests
rocketjoe_jupyter_1 | Done constructing a list of tests
rocketjoe_jupyter_1 | Updating test list for fixtures
rocketjoe_jupyter_1 | Added 0 tests to meet fixture requirements
rocketjoe_jupyter_1 | Checking test dependency graph...
rocketjoe_jupyter_1 | Checking test dependency graph end
rocketjoe_jupyter_1 | test 1
rocketjoe_jupyter_1 | Start 1: test_storage
rocketjoe_jupyter_1 | Could not find executable test_storage
rocketjoe_jupyter_1 | Looked in the following places:
rocketjoe_jupyter_1 | test_storage
rocketjoe_jupyter_1 | test_storage
rocketjoe_jupyter_1 | Release/test_storage
rocketjoe_jupyter_1 | Release/test_storage
rocketjoe_jupyter_1 | Debug/test_storage
rocketjoe_jupyter_1 | Debug/test_storage
rocketjoe_jupyter_1 | MinSizeRel/test_storage
rocketjoe_jupyter_1 | MinSizeRel/test_storage
rocketjoe_jupyter_1 | RelWithDebInfo/test_storage
rocketjoe_jupyter_1 | RelWithDebInfo/test_storage
rocketjoe_jupyter_1 | Deployment/test_storage
rocketjoe_jupyter_1 | Deployment/test_storage
rocketjoe_jupyter_1 | Development/test_storage
rocketjoe_jupyter_1 | Development/test_storage
rocketjoe_jupyter_1 |
rocketjoe_jupyter_1 | 1: Test command:
rocketjoe_jupyter_1 | Unable to find executable: test_storage
rocketjoe_jupyter_1 | 1/2 Test #1: test_storage .....................***Not Run 0.00 sec
rocketjoe_jupyter_1 | test 2
rocketjoe_jupyter_1 | Start 2: test_jupyter_kernel.py
rocketjoe_jupyter_1 |
rocketjoe_jupyter_1 | 2: Test command: /usr/local/bin/pytest "/app/build/apps/rocketjoed/test/test_jupyter_kernel.py"
rocketjoe_jupyter_1 | 2: Environment variables:
rocketjoe_jupyter_1 | 2: JUPYTER_PATH=$JUPYTER_PATH:/app/build
rocketjoe_jupyter_1 | 2: Test timeout computed to be: 10000000
rocketjoe_jupyter_1 | 2: ============================= test session starts ==============================
rocketjoe_jupyter_1 | 2: platform linux -- Python 3.7.3, pytest-5.4.2, py-1.8.2, pluggy-0.13.1
rocketjoe_jupyter_1 | 2: benchmark: 3.2.3 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000)
rocketjoe_jupyter_1 | 2: rootdir: /app/build/apps/rocketjoed
rocketjoe_jupyter_1 | 2: plugins: benchmark-3.2.3, xprocess-0.13.1
rocketjoe_jupyter_1 | 2: collected 26 items
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py EEEEEEEEEEEE.F.F.F.F.F.F.F [100%]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: ==================================== ERRORS ====================================
rocketjoe_jupyter_1 | 2: ___________ ERROR at setup of RocketJoePythonTests.test_clear_output ___________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fbdf36350b8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: ---------------------------- Captured stdout setup -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 13:58:32.384] [__default__] [info] [pid 15 tid 15]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 13:58:32.384] [__default__] [info] [pid 15 tid 15] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /tmp/tmpx05yi1lo.json
rocketjoe_jupyter_1 | 2: [2020-06-25 13:58:32.384] [__default__] [info] [pid 15 tid 15] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 13:58:32.384] [__default__] [info] [pid 15 tid 15] construct process pool
rocketjoe_jupyter_1 | 2: [2020-06-25 13:58:32.410] [__default__] [info] [pid 15 tid 15] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 13:58:32.410] [__default__] [info] [pid 15 tid 15] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 13:58:32.410] [__default__] [info] [pid 15 tid 15] jupyter connection path : /tmp/tmpx05yi1lo.json
rocketjoe_jupyter_1 | 2: [2020-06-25 13:58:32.410] [__default__] [info] [pid 15 tid 15] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 13:58:33.059] [__default__] [info] [pid 15 tid 15] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ---------------------------- Captured stderr setup -----------------------------
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 56541,
rocketjoe_jupyter_1 | 2: "hb_port": 41781,
rocketjoe_jupyter_1 | 2: "iopub_port": 55349,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "kernel_name": "rocketjoe",
rocketjoe_jupyter_1 | 2: "key": "2acecb77-6a893ed97a045ee66f49f29d",
rocketjoe_jupyter_1 | 2: "shell_port": 43017,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 52829,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ____________ ERROR at setup of RocketJoePythonTests.test_completion ____________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fbdf36350b8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: ___________ ERROR at setup of RocketJoePythonTests.test_display_data ___________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fbdf36350b8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: ______________ ERROR at setup of RocketJoePythonTests.test_error _______________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fbdf36350b8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: __________ ERROR at setup of RocketJoePythonTests.test_execute_result __________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fbdf36350b8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: __________ ERROR at setup of RocketJoePythonTests.test_execute_stderr __________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fbdf36350b8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: __________ ERROR at setup of RocketJoePythonTests.test_execute_stdout __________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fbdf36350b8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: _____________ ERROR at setup of RocketJoePythonTests.test_history ______________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fbdf36350b8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: _____________ ERROR at setup of RocketJoePythonTests.test_inspect ______________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fbdf36350b8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: ___________ ERROR at setup of RocketJoePythonTests.test_is_complete ____________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fbdf36350b8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: ___________ ERROR at setup of RocketJoePythonTests.test_kernel_info ____________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fbdf36350b8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: ______________ ERROR at setup of RocketJoePythonTests.test_pager _______________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fbdf36350b8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: =================================== FAILURES ===================================
rocketjoe_jupyter_1 | 2: ______________________ test_rocketjoe_kernel_info_request ______________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fbdf047f828>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7fbdf053ad68>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7fbdf058a730>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7fbdf04d60f0>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_kernel_info_request(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:71:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fbdf047f828>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 13:59:39.662] [__default__] [info] [pid 47 tid 47]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 13:59:39.662] [__default__] [info] [pid 47 tid 47] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-23be001f-7feff63c5340e6cd8eacc650.json
rocketjoe_jupyter_1 | 2: [2020-06-25 13:59:39.662] [__default__] [info] [pid 47 tid 47] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 13:59:39.663] [__default__] [info] [pid 47 tid 47] construct process pool
rocketjoe_jupyter_1 | 2: [2020-06-25 13:59:39.686] [__default__] [info] [pid 47 tid 47] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 13:59:39.686] [__default__] [info] [pid 47 tid 47] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 13:59:39.686] [__default__] [info] [pid 47 tid 47] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-23be001f-7feff63c5340e6cd8eacc650.json
rocketjoe_jupyter_1 | 2: [2020-06-25 13:59:39.686] [__default__] [info] [pid 47 tid 47] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 13:59:40.279] [__default__] [info] [pid 47 tid 47] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 44941,
rocketjoe_jupyter_1 | 2: "hb_port": 51459,
rocketjoe_jupyter_1 | 2: "iopub_port": 47503,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "c412a725-aab943dfaf54da41d39e404e",
rocketjoe_jupyter_1 | 2: "shell_port": 41867,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 40109,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=47)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400001800 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 boost::locale::basic_format<char>::write(std::ostream&) const /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/locale/format.hpp:270 (rocketjoed+0x1186b4e)
rocketjoe_jupyter_1 | 2: #3 boost::locale::basic_format<char>::str[abi:cxx11](std::locale const&) const /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/locale/format.hpp:255 (rocketjoed+0x1171bd7)
rocketjoe_jupyter_1 | 2: #4 rocketjoe::services::detail::jupyter::session::construct_message(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >) ../components/python_sandbox/source/detail/jupyter/session.cpp:454 (rocketjoed+0x1223b34)
rocketjoe_jupyter_1 | 2: #5 rocketjoe::services::detail::jupyter::interpreter_impl::publish_status(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:758 (rocketjoed+0x11388c9)
rocketjoe_jupyter_1 | 2: #6 rocketjoe::services::detail::jupyter::interpreter_impl::interpreter_impl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool, boost::uuids::uuid) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:576 (rocketjoed+0x1134261)
rocketjoe_jupyter_1 | 2: #7 std::_MakeUniq<rocketjoe::services::detail::jupyter::interpreter_impl>::__single_object std::make_unique<rocketjoe::services::detail::jupyter::interpreter_impl, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool&, boost::uuids::uuid>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, zmq::socket_t&&, zmq::socket_t&&, boost::optional<zmq::socket_t>&&, zmq::socket_t&&, boost::optional<zmq::socket_t>&&, boost::optional<zmq::socket_t>&&, bool&, boost::uuids::uuid&&) <null> (rocketjoed+0x117b143)
rocketjoe_jupyter_1 | 2: #8 rocketjoe::services::detail::jupyter::pykernel::pykernel(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool, boost::uuids::uuid) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:1659 (rocketjoed+0x1152c0b)
rocketjoe_jupyter_1 | 2: #9 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:136 (rocketjoed+0x103c6e5)
rocketjoe_jupyter_1 | 2: #10 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:300 (rocketjoed+0x1040eca)
rocketjoe_jupyter_1 | 2: #11 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0xda3453)
rocketjoe_jupyter_1 | 2: #12 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0xdbd3dc)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400001800 by thread T4:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 std::ostreambuf_iterator<char, std::char_traits<char> > boost::locale::util::base_num_format<char>::do_real_put<long>(std::ostreambuf_iterator<char, std::char_traits<char> >, std::ios_base&, char, long) const libs/locale/src/std/../util/numeric.hpp:125 (rocketjoed+0xfc7988)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T4 'ZMQbg/IO/0' (tid=54, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 zmq::thread_t::start(void (*)(void*), void*, char const*) /home/conan/.conan/data/zmq/4.3.2/bincrafters/stable/build/9d43b0a6dcf99be58f9186c18969d7b3c0292752/sources_subfolder/src/thread.cpp:236 (rocketjoed+0x13913ef)
rocketjoe_jupyter_1 | 2: #2 zmq::socket_t::socket_t(zmq::context_t&, zmq::socket_type) /root/.conan/data/cppzmq/4.6.0/bincrafters/stable/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/zmq.hpp:1573 (rocketjoed+0x106c1e3)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:105 (rocketjoed+0x103bbb3)
rocketjoe_jupyter_1 | 2: #4 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:300 (rocketjoed+0x1040eca)
rocketjoe_jupyter_1 | 2: #5 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0xda3453)
rocketjoe_jupyter_1 | 2: #6 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0xdbd3dc)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: _______________________ test_rocketjoe_execute_request_1 _______________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fbdf0555358>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7fbdf053ad68>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7fbdf03fcae8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7fbdf058e6a0>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_execute_request_1(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:81:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fbdf0555358>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 14:00:46.709] [__default__] [info] [pid 71 tid 71]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 14:00:46.709] [__default__] [info] [pid 71 tid 71] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-85df2bf3-708a94a93ef5372cfbc7c1b7.json
rocketjoe_jupyter_1 | 2: [2020-06-25 14:00:46.709] [__default__] [info] [pid 71 tid 71] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 14:00:46.710] [__default__] [info] [pid 71 tid 71] construct process pool
rocketjoe_jupyter_1 | 2: [2020-06-25 14:00:46.733] [__default__] [info] [pid 71 tid 71] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 14:00:46.733] [__default__] [info] [pid 71 tid 71] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 14:00:46.733] [__default__] [info] [pid 71 tid 71] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-85df2bf3-708a94a93ef5372cfbc7c1b7.json
rocketjoe_jupyter_1 | 2: [2020-06-25 14:00:46.733] [__default__] [info] [pid 71 tid 71] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 14:00:47.324] [__default__] [info] [pid 71 tid 71] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 44661,
rocketjoe_jupyter_1 | 2: "hb_port": 55997,
rocketjoe_jupyter_1 | 2: "iopub_port": 34351,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "1afb49f0-703fc4b017f3df26dee0a971",
rocketjoe_jupyter_1 | 2: "shell_port": 58969,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 42483,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=71)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400001800 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 boost::locale::basic_format<char>::write(std::ostream&) const /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/locale/format.hpp:270 (rocketjoed+0x1186b4e)
rocketjoe_jupyter_1 | 2: #3 boost::locale::basic_format<char>::str[abi:cxx11](std::locale const&) const /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/locale/format.hpp:255 (rocketjoed+0x1171bd7)
rocketjoe_jupyter_1 | 2: #4 rocketjoe::services::detail::jupyter::session::construct_message(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >) ../components/python_sandbox/source/detail/jupyter/session.cpp:454 (rocketjoed+0x1223b34)
rocketjoe_jupyter_1 | 2: #5 rocketjoe::services::detail::jupyter::interpreter_impl::publish_status(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:758 (rocketjoed+0x11388c9)
rocketjoe_jupyter_1 | 2: #6 rocketjoe::services::detail::jupyter::interpreter_impl::interpreter_impl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool, boost::uuids::uuid) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:576 (rocketjoed+0x1134261)
rocketjoe_jupyter_1 | 2: #7 std::_MakeUniq<rocketjoe::services::detail::jupyter::interpreter_impl>::__single_object std::make_unique<rocketjoe::services::detail::jupyter::interpreter_impl, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool&, boost::uuids::uuid>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, zmq::socket_t&&, zmq::socket_t&&, boost::optional<zmq::socket_t>&&, zmq::socket_t&&, boost::optional<zmq::socket_t>&&, boost::optional<zmq::socket_t>&&, bool&, boost::uuids::uuid&&) <null> (rocketjoed+0x117b143)
rocketjoe_jupyter_1 | 2: #8 rocketjoe::services::detail::jupyter::pykernel::pykernel(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool, boost::uuids::uuid) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:1659 (rocketjoed+0x1152c0b)
rocketjoe_jupyter_1 | 2: #9 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:136 (rocketjoed+0x103c6e5)
rocketjoe_jupyter_1 | 2: #10 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:300 (rocketjoed+0x1040eca)
rocketjoe_jupyter_1 | 2: #11 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0xda3453)
rocketjoe_jupyter_1 | 2: #12 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0xdbd3dc)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400001800 by thread T4:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 std::ostreambuf_iterator<char, std::char_traits<char> > boost::locale::util::base_num_format<char>::do_real_put<long>(std::ostreambuf_iterator<char, std::char_traits<char> >, std::ios_base&, char, long) const libs/locale/src/std/../util/numeric.hpp:125 (rocketjoed+0xfc7988)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T4 'ZMQbg/IO/0' (tid=78, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 zmq::thread_t::start(void (*)(void*), void*, char const*) /home/conan/.conan/data/zmq/4.3.2/bincrafters/stable/build/9d43b0a6dcf99be58f9186c18969d7b3c0292752/sources_subfolder/src/thread.cpp:236 (rocketjoed+0x13913ef)
rocketjoe_jupyter_1 | 2: #2 zmq::socket_t::socket_t(zmq::context_t&, zmq::socket_type) /root/.conan/data/cppzmq/4.6.0/bincrafters/stable/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/zmq.hpp:1573 (rocketjoed+0x106c1e3)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:105 (rocketjoed+0x103bbb3)
rocketjoe_jupyter_1 | 2: #4 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:300 (rocketjoed+0x1040eca)
rocketjoe_jupyter_1 | 2: #5 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0xda3453)
rocketjoe_jupyter_1 | 2: #6 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0xdbd3dc)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: _______________________ test_rocketjoe_execute_request_2 _______________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fbdf052b908>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7fbdf053ad68>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7fbdf0473620>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7fbdf048db70>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_execute_request_2(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:91:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fbdf052b908>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 14:01:54.481] [__default__] [info] [pid 95 tid 95]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 14:01:54.481] [__default__] [info] [pid 95 tid 95] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-c4f9daf6-f753cc0314bc7a30eb17f87e.json
rocketjoe_jupyter_1 | 2: [2020-06-25 14:01:54.481] [__default__] [info] [pid 95 tid 95] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 14:01:54.481] [__default__] [info] [pid 95 tid 95] construct process pool
rocketjoe_jupyter_1 | 2: [2020-06-25 14:01:54.505] [__default__] [info] [pid 95 tid 95] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 14:01:54.505] [__default__] [info] [pid 95 tid 95] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 14:01:54.505] [__default__] [info] [pid 95 tid 95] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-c4f9daf6-f753cc0314bc7a30eb17f87e.json
rocketjoe_jupyter_1 | 2: [2020-06-25 14:01:54.505] [__default__] [info] [pid 95 tid 95] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 14:01:55.094] [__default__] [info] [pid 95 tid 95] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 52447,
rocketjoe_jupyter_1 | 2: "hb_port": 55897,
rocketjoe_jupyter_1 | 2: "iopub_port": 42141,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "f166f998-829bf0dd067b7bd1bf00079c",
rocketjoe_jupyter_1 | 2: "shell_port": 41665,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 59919,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=95)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400001800 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 boost::locale::basic_format<char>::write(std::ostream&) const /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/locale/format.hpp:270 (rocketjoed+0x1186b4e)
rocketjoe_jupyter_1 | 2: #3 boost::locale::basic_format<char>::str[abi:cxx11](std::locale const&) const /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/locale/format.hpp:255 (rocketjoed+0x1171bd7)
rocketjoe_jupyter_1 | 2: #4 rocketjoe::services::detail::jupyter::session::construct_message(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >) ../components/python_sandbox/source/detail/jupyter/session.cpp:454 (rocketjoed+0x1223b34)
rocketjoe_jupyter_1 | 2: #5 rocketjoe::services::detail::jupyter::interpreter_impl::publish_status(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:758 (rocketjoed+0x11388c9)
rocketjoe_jupyter_1 | 2: #6 rocketjoe::services::detail::jupyter::interpreter_impl::interpreter_impl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool, boost::uuids::uuid) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:576 (rocketjoed+0x1134261)
rocketjoe_jupyter_1 | 2: #7 std::_MakeUniq<rocketjoe::services::detail::jupyter::interpreter_impl>::__single_object std::make_unique<rocketjoe::services::detail::jupyter::interpreter_impl, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool&, boost::uuids::uuid>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, zmq::socket_t&&, zmq::socket_t&&, boost::optional<zmq::socket_t>&&, zmq::socket_t&&, boost::optional<zmq::socket_t>&&, boost::optional<zmq::socket_t>&&, bool&, boost::uuids::uuid&&) <null> (rocketjoed+0x117b143)
rocketjoe_jupyter_1 | 2: #8 rocketjoe::services::detail::jupyter::pykernel::pykernel(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool, boost::uuids::uuid) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:1659 (rocketjoed+0x1152c0b)
rocketjoe_jupyter_1 | 2: #9 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:136 (rocketjoed+0x103c6e5)
rocketjoe_jupyter_1 | 2: #10 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:300 (rocketjoed+0x1040eca)
rocketjoe_jupyter_1 | 2: #11 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0xda3453)
rocketjoe_jupyter_1 | 2: #12 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0xdbd3dc)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400001800 by thread T4:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 std::ostreambuf_iterator<char, std::char_traits<char> > boost::locale::util::base_num_format<char>::do_real_put<long>(std::ostreambuf_iterator<char, std::char_traits<char> >, std::ios_base&, char, long) const libs/locale/src/std/../util/numeric.hpp:125 (rocketjoed+0xfc7988)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T4 'ZMQbg/IO/0' (tid=102, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 zmq::thread_t::start(void (*)(void*), void*, char const*) /home/conan/.conan/data/zmq/4.3.2/bincrafters/stable/build/9d43b0a6dcf99be58f9186c18969d7b3c0292752/sources_subfolder/src/thread.cpp:236 (rocketjoed+0x13913ef)
rocketjoe_jupyter_1 | 2: #2 zmq::socket_t::socket_t(zmq::context_t&, zmq::socket_type) /root/.conan/data/cppzmq/4.6.0/bincrafters/stable/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/zmq.hpp:1573 (rocketjoed+0x106c1e3)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:105 (rocketjoed+0x103bbb3)
rocketjoe_jupyter_1 | 2: #4 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:300 (rocketjoed+0x1040eca)
rocketjoe_jupyter_1 | 2: #5 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0xda3453)
rocketjoe_jupyter_1 | 2: #6 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0xdbd3dc)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ______________________ test_rocketjoe_complete_request_1 _______________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fbdf2e24780>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7fbdf053ad68>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7fbdf05986a8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7fbdf03e7a20>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_complete_request_1(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:101:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fbdf2e24780>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 14:03:01.164] [__default__] [info] [pid 119 tid 119]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 14:03:01.164] [__default__] [info] [pid 119 tid 119] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-d7e35f1f-9ebd59279d5a31a214895d75.json
rocketjoe_jupyter_1 | 2: [2020-06-25 14:03:01.164] [__default__] [info] [pid 119 tid 119] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 14:03:01.164] [__default__] [info] [pid 119 tid 119] construct process pool
rocketjoe_jupyter_1 | 2: [2020-06-25 14:03:01.188] [__default__] [info] [pid 119 tid 119] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 14:03:01.188] [__default__] [info] [pid 119 tid 119] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 14:03:01.188] [__default__] [info] [pid 119 tid 119] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-d7e35f1f-9ebd59279d5a31a214895d75.json
rocketjoe_jupyter_1 | 2: [2020-06-25 14:03:01.188] [__default__] [info] [pid 119 tid 119] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 14:03:01.789] [__default__] [info] [pid 119 tid 119] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 53999,
rocketjoe_jupyter_1 | 2: "hb_port": 40385,
rocketjoe_jupyter_1 | 2: "iopub_port": 53967,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "26ee9c3e-9fd627cfebecd0d10750d228",
rocketjoe_jupyter_1 | 2: "shell_port": 54013,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 36359,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=119)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400001000 by main thread:
rocketjoe_jupyter_1 | 2: #0 fopen <null> (libtsan.so.0+0x459fe)
rocketjoe_jupyter_1 | 2: #1 internal_setent nss_files/files-XXX.c:77 (libnss_files.so.2+0x67c2)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::detail::jupyter::interpreter_impl::publish_status(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:758 (rocketjoed+0x11388c9)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::detail::jupyter::interpreter_impl::interpreter_impl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool, boost::uuids::uuid) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:576 (rocketjoed+0x1134261)
rocketjoe_jupyter_1 | 2: #4 std::_MakeUniq<rocketjoe::services::detail::jupyter::interpreter_impl>::__single_object std::make_unique<rocketjoe::services::detail::jupyter::interpreter_impl, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool&, boost::uuids::uuid>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, zmq::socket_t&&, zmq::socket_t&&, boost::optional<zmq::socket_t>&&, zmq::socket_t&&, boost::optional<zmq::socket_t>&&, boost::optional<zmq::socket_t>&&, bool&, boost::uuids::uuid&&) <null> (rocketjoed+0x117b143)
rocketjoe_jupyter_1 | 2: #5 rocketjoe::services::detail::jupyter::pykernel::pykernel(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool, boost::uuids::uuid) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:1659 (rocketjoed+0x1152c0b)
rocketjoe_jupyter_1 | 2: #6 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:136 (rocketjoed+0x103c6e5)
rocketjoe_jupyter_1 | 2: #7 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:300 (rocketjoed+0x1040eca)
rocketjoe_jupyter_1 | 2: #8 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0xda3453)
rocketjoe_jupyter_1 | 2: #9 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0xdbd3dc)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400001000 by thread T4:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 std::ostreambuf_iterator<char, std::char_traits<char> > boost::locale::util::base_num_format<char>::do_real_put<long>(std::ostreambuf_iterator<char, std::char_traits<char> >, std::ios_base&, char, long) const libs/locale/src/std/../util/numeric.hpp:125 (rocketjoed+0xfc7988)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T4 'ZMQbg/IO/0' (tid=126, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 zmq::thread_t::start(void (*)(void*), void*, char const*) /home/conan/.conan/data/zmq/4.3.2/bincrafters/stable/build/9d43b0a6dcf99be58f9186c18969d7b3c0292752/sources_subfolder/src/thread.cpp:236 (rocketjoed+0x13913ef)
rocketjoe_jupyter_1 | 2: #2 zmq::socket_t::socket_t(zmq::context_t&, zmq::socket_type) /root/.conan/data/cppzmq/4.6.0/bincrafters/stable/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/zmq.hpp:1573 (rocketjoed+0x106c1e3)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:105 (rocketjoed+0x103bbb3)
rocketjoe_jupyter_1 | 2: #4 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:300 (rocketjoed+0x1040eca)
rocketjoe_jupyter_1 | 2: #5 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0xda3453)
rocketjoe_jupyter_1 | 2: #6 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0xdbd3dc)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x459fe) in __interceptor_fopen
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ______________________ test_rocketjoe_complete_request_2 _______________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fbdf047f0b8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7fbdf053ad68>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7fbdf038ba60>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7fbdf0392940>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_complete_request_2(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:111:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fbdf047f0b8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 14:04:07.493] [__default__] [info] [pid 143 tid 143]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 14:04:07.493] [__default__] [info] [pid 143 tid 143] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-4279957f-557474592a3a7f7c52a53fe4.json
rocketjoe_jupyter_1 | 2: [2020-06-25 14:04:07.493] [__default__] [info] [pid 143 tid 143] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 14:04:07.493] [__default__] [info] [pid 143 tid 143] construct process pool
rocketjoe_jupyter_1 | 2: [2020-06-25 14:04:07.517] [__default__] [info] [pid 143 tid 143] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 14:04:07.517] [__default__] [info] [pid 143 tid 143] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 14:04:07.517] [__default__] [info] [pid 143 tid 143] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-4279957f-557474592a3a7f7c52a53fe4.json
rocketjoe_jupyter_1 | 2: [2020-06-25 14:04:07.517] [__default__] [info] [pid 143 tid 143] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 14:04:08.125] [__default__] [info] [pid 143 tid 143] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 60519,
rocketjoe_jupyter_1 | 2: "hb_port": 44649,
rocketjoe_jupyter_1 | 2: "iopub_port": 43759,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "0b9eafaf-895c1c15ba4424b7251096dc",
rocketjoe_jupyter_1 | 2: "shell_port": 49889,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 49187,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=143)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400001000 by main thread:
rocketjoe_jupyter_1 | 2: #0 fopen <null> (libtsan.so.0+0x459fe)
rocketjoe_jupyter_1 | 2: #1 internal_setent nss_files/files-XXX.c:77 (libnss_files.so.2+0x67c2)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::detail::jupyter::interpreter_impl::publish_status(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:758 (rocketjoed+0x11388c9)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::detail::jupyter::interpreter_impl::interpreter_impl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool, boost::uuids::uuid) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:576 (rocketjoed+0x1134261)
rocketjoe_jupyter_1 | 2: #4 std::_MakeUniq<rocketjoe::services::detail::jupyter::interpreter_impl>::__single_object std::make_unique<rocketjoe::services::detail::jupyter::interpreter_impl, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool&, boost::uuids::uuid>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, zmq::socket_t&&, zmq::socket_t&&, boost::optional<zmq::socket_t>&&, zmq::socket_t&&, boost::optional<zmq::socket_t>&&, boost::optional<zmq::socket_t>&&, bool&, boost::uuids::uuid&&) <null> (rocketjoed+0x117b143)
rocketjoe_jupyter_1 | 2: #5 rocketjoe::services::detail::jupyter::pykernel::pykernel(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool, boost::uuids::uuid) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:1659 (rocketjoed+0x1152c0b)
rocketjoe_jupyter_1 | 2: #6 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:136 (rocketjoed+0x103c6e5)
rocketjoe_jupyter_1 | 2: #7 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:300 (rocketjoed+0x1040eca)
rocketjoe_jupyter_1 | 2: #8 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0xda3453)
rocketjoe_jupyter_1 | 2: #9 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0xdbd3dc)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400001000 by thread T4:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 std::ostreambuf_iterator<char, std::char_traits<char> > boost::locale::util::base_num_format<char>::do_real_put<long>(std::ostreambuf_iterator<char, std::char_traits<char> >, std::ios_base&, char, long) const libs/locale/src/std/../util/numeric.hpp:125 (rocketjoed+0xfc7988)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T4 'ZMQbg/IO/0' (tid=150, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 zmq::thread_t::start(void (*)(void*), void*, char const*) /home/conan/.conan/data/zmq/4.3.2/bincrafters/stable/build/9d43b0a6dcf99be58f9186c18969d7b3c0292752/sources_subfolder/src/thread.cpp:236 (rocketjoed+0x13913ef)
rocketjoe_jupyter_1 | 2: #2 zmq::socket_t::socket_t(zmq::context_t&, zmq::socket_type) /root/.conan/data/cppzmq/4.6.0/bincrafters/stable/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/zmq.hpp:1573 (rocketjoed+0x106c1e3)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:105 (rocketjoed+0x103bbb3)
rocketjoe_jupyter_1 | 2: #4 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:300 (rocketjoed+0x1040eca)
rocketjoe_jupyter_1 | 2: #5 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0xda3453)
rocketjoe_jupyter_1 | 2: #6 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0xdbd3dc)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x459fe) in __interceptor_fopen
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: _____________________ test_rocketjoe_is_complete_request_1 _____________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fbdf04cc588>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7fbdf053ad68>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7fbdf01e9d90>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7fbdf02c3e48>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_is_complete_request_1(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:121:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fbdf04cc588>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 14:05:14.205] [__default__] [info] [pid 167 tid 167]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 14:05:14.205] [__default__] [info] [pid 167 tid 167] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-6fac0059-4eedd3bba62fd357d8d0d4cf.json
rocketjoe_jupyter_1 | 2: [2020-06-25 14:05:14.206] [__default__] [info] [pid 167 tid 167] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 14:05:14.206] [__default__] [info] [pid 167 tid 167] construct process pool
rocketjoe_jupyter_1 | 2: [2020-06-25 14:05:14.229] [__default__] [info] [pid 167 tid 167] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 14:05:14.229] [__default__] [info] [pid 167 tid 167] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 14:05:14.229] [__default__] [info] [pid 167 tid 167] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-6fac0059-4eedd3bba62fd357d8d0d4cf.json
rocketjoe_jupyter_1 | 2: [2020-06-25 14:05:14.229] [__default__] [info] [pid 167 tid 167] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 14:05:14.844] [__default__] [info] [pid 167 tid 167] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 34693,
rocketjoe_jupyter_1 | 2: "hb_port": 35215,
rocketjoe_jupyter_1 | 2: "iopub_port": 57061,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "bf32fd93-6b04904d0abdc0537013e620",
rocketjoe_jupyter_1 | 2: "shell_port": 40375,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 32955,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=167)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400001800 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 boost::locale::basic_format<char>::write(std::ostream&) const /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/locale/format.hpp:270 (rocketjoed+0x1186b4e)
rocketjoe_jupyter_1 | 2: #3 boost::locale::basic_format<char>::str[abi:cxx11](std::locale const&) const /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/locale/format.hpp:255 (rocketjoed+0x1171bd7)
rocketjoe_jupyter_1 | 2: #4 rocketjoe::services::detail::jupyter::session::construct_message(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >) ../components/python_sandbox/source/detail/jupyter/session.cpp:454 (rocketjoed+0x1223b34)
rocketjoe_jupyter_1 | 2: #5 rocketjoe::services::detail::jupyter::interpreter_impl::publish_status(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:758 (rocketjoed+0x11388c9)
rocketjoe_jupyter_1 | 2: #6 rocketjoe::services::detail::jupyter::interpreter_impl::interpreter_impl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool, boost::uuids::uuid) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:576 (rocketjoed+0x1134261)
rocketjoe_jupyter_1 | 2: #7 std::_MakeUniq<rocketjoe::services::detail::jupyter::interpreter_impl>::__single_object std::make_unique<rocketjoe::services::detail::jupyter::interpreter_impl, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool&, boost::uuids::uuid>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, zmq::socket_t&&, zmq::socket_t&&, boost::optional<zmq::socket_t>&&, zmq::socket_t&&, boost::optional<zmq::socket_t>&&, boost::optional<zmq::socket_t>&&, bool&, boost::uuids::uuid&&) <null> (rocketjoed+0x117b143)
rocketjoe_jupyter_1 | 2: #8 rocketjoe::services::detail::jupyter::pykernel::pykernel(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool, boost::uuids::uuid) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:1659 (rocketjoed+0x1152c0b)
rocketjoe_jupyter_1 | 2: #9 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:136 (rocketjoed+0x103c6e5)
rocketjoe_jupyter_1 | 2: #10 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:300 (rocketjoed+0x1040eca)
rocketjoe_jupyter_1 | 2: #11 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0xda3453)
rocketjoe_jupyter_1 | 2: #12 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0xdbd3dc)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400001800 by thread T4:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 std::ostreambuf_iterator<char, std::char_traits<char> > boost::locale::util::base_num_format<char>::do_real_put<long>(std::ostreambuf_iterator<char, std::char_traits<char> >, std::ios_base&, char, long) const libs/locale/src/std/../util/numeric.hpp:125 (rocketjoed+0xfc7988)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T4 'ZMQbg/IO/0' (tid=174, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 zmq::thread_t::start(void (*)(void*), void*, char const*) /home/conan/.conan/data/zmq/4.3.2/bincrafters/stable/build/9d43b0a6dcf99be58f9186c18969d7b3c0292752/sources_subfolder/src/thread.cpp:236 (rocketjoed+0x13913ef)
rocketjoe_jupyter_1 | 2: #2 zmq::socket_t::socket_t(zmq::context_t&, zmq::socket_type) /root/.conan/data/cppzmq/4.6.0/bincrafters/stable/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/zmq.hpp:1573 (rocketjoed+0x106c1e3)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:105 (rocketjoed+0x103bbb3)
rocketjoe_jupyter_1 | 2: #4 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:300 (rocketjoed+0x1040eca)
rocketjoe_jupyter_1 | 2: #5 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0xda3453)
rocketjoe_jupyter_1 | 2: #6 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0xdbd3dc)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: _____________________ test_rocketjoe_is_complete_request_2 _____________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fbdf0559f28>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7fbdf053ad68>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7fbdf0598620>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7fbdf03354a8>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_is_complete_request_2(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:131:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fbdf0559f28>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 14:06:20.840] [__default__] [info] [pid 191 tid 191]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 14:06:20.840] [__default__] [info] [pid 191 tid 191] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-0e6dc77a-1db78525f5c65b6bcbb36e60.json
rocketjoe_jupyter_1 | 2: [2020-06-25 14:06:20.840] [__default__] [info] [pid 191 tid 191] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 14:06:20.840] [__default__] [info] [pid 191 tid 191] construct process pool
rocketjoe_jupyter_1 | 2: [2020-06-25 14:06:20.864] [__default__] [info] [pid 191 tid 191] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 14:06:20.864] [__default__] [info] [pid 191 tid 191] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 14:06:20.864] [__default__] [info] [pid 191 tid 191] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-0e6dc77a-1db78525f5c65b6bcbb36e60.json
rocketjoe_jupyter_1 | 2: [2020-06-25 14:06:20.864] [__default__] [info] [pid 191 tid 191] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 14:06:21.463] [__default__] [info] [pid 191 tid 191] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 59995,
rocketjoe_jupyter_1 | 2: "hb_port": 35047,
rocketjoe_jupyter_1 | 2: "iopub_port": 39521,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "394d957e-f536825149254a67a0498240",
rocketjoe_jupyter_1 | 2: "shell_port": 35307,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 49853,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=191)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400001000 by main thread:
rocketjoe_jupyter_1 | 2: #0 fopen <null> (libtsan.so.0+0x459fe)
rocketjoe_jupyter_1 | 2: #1 internal_setent nss_files/files-XXX.c:77 (libnss_files.so.2+0x67c2)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::detail::jupyter::interpreter_impl::publish_status(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:758 (rocketjoed+0x11388c9)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::detail::jupyter::interpreter_impl::interpreter_impl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool, boost::uuids::uuid) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:576 (rocketjoed+0x1134261)
rocketjoe_jupyter_1 | 2: #4 std::_MakeUniq<rocketjoe::services::detail::jupyter::interpreter_impl>::__single_object std::make_unique<rocketjoe::services::detail::jupyter::interpreter_impl, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool&, boost::uuids::uuid>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, zmq::socket_t&&, zmq::socket_t&&, boost::optional<zmq::socket_t>&&, zmq::socket_t&&, boost::optional<zmq::socket_t>&&, boost::optional<zmq::socket_t>&&, bool&, boost::uuids::uuid&&) <null> (rocketjoed+0x117b143)
rocketjoe_jupyter_1 | 2: #5 rocketjoe::services::detail::jupyter::pykernel::pykernel(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool, boost::uuids::uuid) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:1659 (rocketjoed+0x1152c0b)
rocketjoe_jupyter_1 | 2: #6 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:136 (rocketjoed+0x103c6e5)
rocketjoe_jupyter_1 | 2: #7 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:300 (rocketjoed+0x1040eca)
rocketjoe_jupyter_1 | 2: #8 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0xda3453)
rocketjoe_jupyter_1 | 2: #9 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0xdbd3dc)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400001000 by thread T4:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 std::ostreambuf_iterator<char, std::char_traits<char> > boost::locale::util::base_num_format<char>::do_real_put<long>(std::ostreambuf_iterator<char, std::char_traits<char> >, std::ios_base&, char, long) const libs/locale/src/std/../util/numeric.hpp:125 (rocketjoed+0xfc7988)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T4 'ZMQbg/IO/0' (tid=198, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 zmq::thread_t::start(void (*)(void*), void*, char const*) /home/conan/.conan/data/zmq/4.3.2/bincrafters/stable/build/9d43b0a6dcf99be58f9186c18969d7b3c0292752/sources_subfolder/src/thread.cpp:236 (rocketjoed+0x13913ef)
rocketjoe_jupyter_1 | 2: #2 zmq::socket_t::socket_t(zmq::context_t&, zmq::socket_type) /root/.conan/data/cppzmq/4.6.0/bincrafters/stable/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/zmq.hpp:1573 (rocketjoed+0x106c1e3)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:105 (rocketjoed+0x103bbb3)
rocketjoe_jupyter_1 | 2: #4 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:300 (rocketjoed+0x1040eca)
rocketjoe_jupyter_1 | 2: #5 init_service(goblin_engineer::components::root_manager&, rocketjoe::configuration&, components::log_t&) ../apps/rocketjoed/init_service.cpp:16 (rocketjoed+0xda3453)
rocketjoe_jupyter_1 | 2: #6 main ../apps/rocketjoed/main.cpp:190 (rocketjoed+0xdbd3dc)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x459fe) in __interceptor_fopen
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: =============================== warnings summary ===============================
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/nose/importer.py:12
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/nose/importer.py:12: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
rocketjoe_jupyter_1 | 2: from imp import find_module, load_module, acquire_lock, release_lock
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/messagespec.py:52
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/messagespec.py:52: DeprecationWarning: Traits should be given as instances, not types (for example, `Int()`, not `Int`). Passing types is deprecated in traitlets 4.1.
rocketjoe_jupyter_1 | 2: payload = List(Dict)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/messagespec.py:59
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/messagespec.py:59: DeprecationWarning: Traits should be given as instances, not types (for example, `Int()`, not `Int`). Passing types is deprecated in traitlets 4.1.
rocketjoe_jupyter_1 | 2: traceback = List(Unicode)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/messagespec.py:67
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/messagespec.py:67: DeprecationWarning: Traits should be given as instances, not types (for example, `Int()`, not `Int`). Passing types is deprecated in traitlets 4.1.
rocketjoe_jupyter_1 | 2: args = List(Unicode)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/messagespec.py:78
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/messagespec.py:78: DeprecationWarning: Traits should be given as instances, not types (for example, `Int()`, not `Int`). Passing types is deprecated in traitlets 4.1.
rocketjoe_jupyter_1 | 2: matches = List(Unicode)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py::test_rocketjoe_kernel_info_request
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:70: PytestBenchmarkWarning: Benchmark fixture was not used at all in this test!
rocketjoe_jupyter_1 | 2: def test_rocketjoe_kernel_info_request(benchmark) -> None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py::test_rocketjoe_execute_request_1
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:80: PytestBenchmarkWarning: Benchmark fixture was not used at all in this test!
rocketjoe_jupyter_1 | 2: def test_rocketjoe_execute_request_1(benchmark) -> None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py::test_rocketjoe_execute_request_2
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:90: PytestBenchmarkWarning: Benchmark fixture was not used at all in this test!
rocketjoe_jupyter_1 | 2: def test_rocketjoe_execute_request_2(benchmark) -> None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py::test_rocketjoe_complete_request_1
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:100: PytestBenchmarkWarning: Benchmark fixture was not used at all in this test!
rocketjoe_jupyter_1 | 2: def test_rocketjoe_complete_request_1(benchmark) -> None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py::test_rocketjoe_complete_request_2
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:110: PytestBenchmarkWarning: Benchmark fixture was not used at all in this test!
rocketjoe_jupyter_1 | 2: def test_rocketjoe_complete_request_2(benchmark) -> None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py::test_rocketjoe_is_complete_request_1
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:120: PytestBenchmarkWarning: Benchmark fixture was not used at all in this test!
rocketjoe_jupyter_1 | 2: def test_rocketjoe_is_complete_request_1(benchmark) -> None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py::test_rocketjoe_is_complete_request_2
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:130: PytestBenchmarkWarning: Benchmark fixture was not used at all in this test!
rocketjoe_jupyter_1 | 2: def test_rocketjoe_is_complete_request_2(benchmark) -> None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: -- Docs: https://docs.pytest.org/en/latest/warnings.html
rocketjoe_jupyter_1 | 2:
------------------------------------------------------------------------------------------- benchmark: 7 tests ------------------------------------------------------------------------------------------
rocketjoe_jupyter_1 | 2: Name (time in ms) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations
rocketjoe_jupyter_1 | 2: ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
rocketjoe_jupyter_1 | 2: test_ipykernel_kernel_info_request 1.9344 (1.0) 3.0650 (1.0) 2.2711 (1.0) 0.1812 (1.0) 2.2608 (1.0) 0.2275 (1.15) 101;5 440.3072 (1.0) 323 1
rocketjoe_jupyter_1 | 2: test_ipykernel_is_complete_request_1 2.0408 (1.05) 3.4592 (1.13) 2.5097 (1.11) 0.2036 (1.12) 2.4990 (1.11) 0.2089 (1.06) 91;18 398.4615 (0.90) 410 1
rocketjoe_jupyter_1 | 2: test_ipykernel_is_complete_request_2 2.0768 (1.07) 4.2978 (1.40) 2.4550 (1.08) 0.2073 (1.14) 2.4286 (1.07) 0.1970 (1.0) 84;12 407.3283 (0.93) 408 1
rocketjoe_jupyter_1 | 2: test_ipykernel_execute_request_2 9.0699 (4.69) 21.0721 (6.88) 11.3506 (5.00) 1.6851 (9.30) 10.8908 (4.82) 0.7894 (4.01) 21;19 88.1010 (0.20) 178 1
rocketjoe_jupyter_1 | 2: test_ipykernel_execute_request_1 9.1402 (4.73) 17.6608 (5.76) 11.2127 (4.94) 1.6217 (8.95) 10.7599 (4.76) 0.6740 (3.42) 20;18 89.1844 (0.20) 121 1
rocketjoe_jupyter_1 | 2: test_ipykernel_complete_request_1 23.8988 (12.35) 25.0889 (8.19) 24.3109 (10.70) 0.5077 (2.80) 24.1061 (10.66) 0.7729 (3.92) 1;0 41.1338 (0.09) 5 1
rocketjoe_jupyter_1 | 2: test_ipykernel_complete_request_2 24.0468 (12.43) 31.9328 (10.42) 26.0115 (11.45) 3.3635 (18.57) 24.2660 (10.73) 2.9440 (14.94) 1;1 38.4446 (0.09) 5 1
rocketjoe_jupyter_1 | 2: ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Legend:
rocketjoe_jupyter_1 | 2: Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile.
rocketjoe_jupyter_1 | 2: OPS: Operations Per Second, computed as 1 / Mean
rocketjoe_jupyter_1 | 2: =========================== short test summary info ============================
rocketjoe_jupyter_1 | 2: FAILED test/test_jupyter_kernel.py::test_rocketjoe_kernel_info_request - Time...
rocketjoe_jupyter_1 | 2: FAILED test/test_jupyter_kernel.py::test_rocketjoe_execute_request_1 - Timeou...
rocketjoe_jupyter_1 | 2: FAILED test/test_jupyter_kernel.py::test_rocketjoe_execute_request_2 - Timeou...
rocketjoe_jupyter_1 | 2: FAILED test/test_jupyter_kernel.py::test_rocketjoe_complete_request_1 - Timeo...
rocketjoe_jupyter_1 | 2: FAILED test/test_jupyter_kernel.py::test_rocketjoe_complete_request_2 - Timeo...
rocketjoe_jupyter_1 | 2: FAILED test/test_jupyter_kernel.py::test_rocketjoe_is_complete_request_1 - Ti...
rocketjoe_jupyter_1 | 2: FAILED test/test_jupyter_kernel.py::test_rocketjoe_is_complete_request_2 - Ti...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_clear_output - ...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_completion - Ru...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_display_data - ...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_error - Runtime...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_execute_result
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_execute_stderr
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_execute_stdout
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_history - Runti...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_inspect - Runti...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_is_complete - R...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_kernel_info - R...
rocketjoe_jupyter_1 | 2: ERROR test/test_jupyter_kernel.py::RocketJoePythonTests::test_pager - Runtime...
rocketjoe_jupyter_1 | 2: ======= 7 failed, 7 passed, 12 warnings, 12 errors in 534.42s (0:08:54) ========
rocketjoe_jupyter_1 | 2/2 Test #2: test_jupyter_kernel.py ...........***Failed 534.85 sec
rocketjoe_jupyter_1 |
rocketjoe_jupyter_1 | 0% tests passed, 2 tests failed out of 2
rocketjoe_jupyter_1 |
rocketjoe_jupyter_1 | Total Test time (real) = 534.85 sec
rocketjoe_jupyter_1 |
rocketjoe_jupyter_1 | The following tests FAILED:
rocketjoe_jupyter_1 | 1 - test_storage (Not Run)
rocketjoe_jupyter_1 | 2 - test_jupyter_kernel.py (Failed)
rocketjoe_jupyter_1 | Errors while running CTest
docker_rocketjoe_jupyter_1 exited with code 8
Raw
gistfile4.txt
rocketjoe_jupyter_1 | UpdateCTestConfiguration from :/app/build/DartConfiguration.tcl
rocketjoe_jupyter_1 | UpdateCTestConfiguration from :/app/build/DartConfiguration.tcl
rocketjoe_jupyter_1 | Test project /app/build
rocketjoe_jupyter_1 | Constructing a list of tests
rocketjoe_jupyter_1 | Done constructing a list of tests
rocketjoe_jupyter_1 | Updating test list for fixtures
rocketjoe_jupyter_1 | Added 0 tests to meet fixture requirements
rocketjoe_jupyter_1 | Checking test dependency graph...
rocketjoe_jupyter_1 | Checking test dependency graph end
rocketjoe_jupyter_1 | test 1
rocketjoe_jupyter_1 | Start 1: test_storage
rocketjoe_jupyter_1 | Could not find executable test_storage
rocketjoe_jupyter_1 | Looked in the following places:
rocketjoe_jupyter_1 | test_storage
rocketjoe_jupyter_1 | test_storage
rocketjoe_jupyter_1 | Release/test_storage
rocketjoe_jupyter_1 | Release/test_storage
rocketjoe_jupyter_1 | Debug/test_storage
rocketjoe_jupyter_1 | Debug/test_storage
rocketjoe_jupyter_1 | MinSizeRel/test_storage
rocketjoe_jupyter_1 | MinSizeRel/test_storage
rocketjoe_jupyter_1 | RelWithDebInfo/test_storage
rocketjoe_jupyter_1 | RelWithDebInfo/test_storage
rocketjoe_jupyter_1 | Deployment/test_storage
rocketjoe_jupyter_1 | Deployment/test_storage
rocketjoe_jupyter_1 | Development/test_storage
rocketjoe_jupyter_1 | Development/test_storage
rocketjoe_jupyter_1 |
rocketjoe_jupyter_1 | 1: Test command:
rocketjoe_jupyter_1 | Unable to find executable: test_storage
rocketjoe_jupyter_1 | 1/2 Test #1: test_storage .....................***Not Run 0.00 sec
rocketjoe_jupyter_1 | test 2
rocketjoe_jupyter_1 | Start 2: test_jupyter_kernel.py
rocketjoe_jupyter_1 |
rocketjoe_jupyter_1 | 2: Test command: /usr/local/bin/pytest "/app/build/apps/rocketjoed/test/test_jupyter_kernel.py"
rocketjoe_jupyter_1 | 2: Environment variables:
rocketjoe_jupyter_1 | 2: JUPYTER_PATH=$JUPYTER_PATH:/app/build
rocketjoe_jupyter_1 | 2: Test timeout computed to be: 10000000
rocketjoe_jupyter_1 | 2: ============================= test session starts ==============================
rocketjoe_jupyter_1 | 2: platform linux -- Python 3.7.3, pytest-5.4.2, py-1.8.2, pluggy-0.13.1
rocketjoe_jupyter_1 | 2: benchmark: 3.2.3 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000)
rocketjoe_jupyter_1 | 2: rootdir: /app/build/apps/rocketjoed
rocketjoe_jupyter_1 | 2: plugins: benchmark-3.2.3, xprocess-0.13.1
rocketjoe_jupyter_1 | 2: collected 26 items
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py EEEEEEEEEEEE.F.F.F.F.F.F.F [100%]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: ==================================== ERRORS ====================================
rocketjoe_jupyter_1 | 2: ___________ ERROR at setup of RocketJoePythonTests.test_clear_output ___________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fba99480a20>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: ---------------------------- Captured stdout setup -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 15:38:18.563] [__default__] [info] [pid 14 tid 14]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 15:38:18.563] [__default__] [info] [pid 14 tid 14] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /tmp/tmprjnxjyhu.json
rocketjoe_jupyter_1 | 2: [2020-06-25 15:38:18.563] [__default__] [info] [pid 14 tid 14] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 15:38:18.591] [__default__] [info] [pid 14 tid 14] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 15:38:18.591] [__default__] [info] [pid 14 tid 14] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 15:38:18.591] [__default__] [info] [pid 14 tid 14] jupyter connection path : /tmp/tmprjnxjyhu.json
rocketjoe_jupyter_1 | 2: [2020-06-25 15:38:18.591] [__default__] [info] [pid 14 tid 14] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 15:38:19.907] [__default__] [info] [pid 14 tid 14] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ---------------------------- Captured stderr setup -----------------------------
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=14)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000050 by thread T1:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 std::__shared_ptr<spdlog::async_logger, (__gnu_cxx::_Lock_policy)2>::~__shared_ptr() /usr/include/c++/8/bits/shared_ptr_base.h:1167 (rocketjoed+0xe899ef)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000050 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 boost::filesystem::path const& boost::any_cast<boost::filesystem::path const&>(boost::any&) <null> (rocketjoed+0xd38315)
rocketjoe_jupyter_1 | 2: #3 boost::filesystem::path const& boost::any_cast<boost::filesystem::path const&>(boost::any const&) <null> (rocketjoed+0xd2e1bb)
rocketjoe_jupyter_1 | 2: #4 boost::filesystem::path const& boost::program_options::variable_value::as<boost::filesystem::path>() const <null> (rocketjoed+0xd26acc)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:181 (rocketjoed+0xd12e7d)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=21, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 void std::allocator_traits<std::allocator<spdlog::details::thread_pool> >::construct<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>&, spdlog::details::thread_pool*, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/alloc_traits.h:475 (rocketjoed+0x122fe7c)
rocketjoe_jupyter_1 | 2: #3 std::_Sp_counted_ptr_inplace<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, (__gnu_cxx::_Lock_policy)2>::_Sp_counted_ptr_inplace<unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:545 (rocketjoed+0x122eba5)
rocketjoe_jupyter_1 | 2: #4 std::__shared_count<(__gnu_cxx::_Lock_policy)2>::__shared_count<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(spdlog::details::thread_pool*&, std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:677 (rocketjoed+0x122dea2)
rocketjoe_jupyter_1 | 2: #5 std::__shared_ptr<spdlog::details::thread_pool, (__gnu_cxx::_Lock_policy)2>::__shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:1342 (rocketjoed+0x122d611)
rocketjoe_jupyter_1 | 2: #6 std::shared_ptr<spdlog::details::thread_pool>::shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:359 (rocketjoed+0x122ce59)
rocketjoe_jupyter_1 | 2: #7 std::shared_ptr<spdlog::details::thread_pool> std::allocate_shared<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool> const&, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:706 (rocketjoed+0x122c1fe)
rocketjoe_jupyter_1 | 2: #8 std::shared_ptr<spdlog::details::thread_pool> std::make_shared<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:722 (rocketjoed+0x122b3de)
rocketjoe_jupyter_1 | 2: #9 spdlog::init_thread_pool(unsigned long, unsigned long, std::function<void ()>) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:78 (rocketjoed+0x122af71)
rocketjoe_jupyter_1 | 2: #10 spdlog::init_thread_pool(unsigned long, unsigned long) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:85 (rocketjoed+0x122b0b3)
rocketjoe_jupyter_1 | 2: #11 components::initialization_logger() ../components/log/log.cpp:32 (rocketjoed+0x122a4ec)
rocketjoe_jupyter_1 | 2: #12 main ../apps/rocketjoed/main.cpp:71 (rocketjoed+0xd11600)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=14)
rocketjoe_jupyter_1 | 2: Read of size 1 at 0x7b0800001010 by main thread:
rocketjoe_jupyter_1 | 2: #0 strncpy <null> (libtsan.so.0+0x2b783)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0x81f63)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:27 (rocketjoed+0x11daacf)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:273 (rocketjoed+0xf5e8ce)
rocketjoe_jupyter_1 | 2: #4 main ../apps/rocketjoed/main.cpp:199 (rocketjoed+0xd130e6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0800001010 by thread T1 (mutexes: write M89):
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 __tzstring_len /build/glibc-vjB4T1/glibc-2.28/time/tzset.c:99 (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0xe51956)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Location is heap block of size 20 at 0x7b0800001000 allocated by thread T1:
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 __tzstring_len /build/glibc-vjB4T1/glibc-2.28/time/tzset.c:99 (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0xe51956)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M89 (0x55f624e32860) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0xcfb26f)
rocketjoe_jupyter_1 | 2: #2 std::mutex::lock() /usr/include/c++/8/bits/std_mutex.h:103 (rocketjoed+0xcfe203)
rocketjoe_jupyter_1 | 2: #3 std::lock_guard<std::mutex>::lock_guard(std::mutex&) /usr/include/c++/8/bits/std_mutex.h:162 (rocketjoed+0xd09fbd)
rocketjoe_jupyter_1 | 2: #4 spdlog::sinks::ansicolor_sink<spdlog::details::console_mutex>::set_formatter(std::unique_ptr<spdlog::formatter, std::default_delete<spdlog::formatter> >) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/sinks/ansicolor_sink-inl.h:84 (rocketjoed+0xe8a592)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:71 (rocketjoed+0xd11600)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=21, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 void std::allocator_traits<std::allocator<spdlog::details::thread_pool> >::construct<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>&, spdlog::details::thread_pool*, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/alloc_traits.h:475 (rocketjoed+0x122fe7c)
rocketjoe_jupyter_1 | 2: #3 std::_Sp_counted_ptr_inplace<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, (__gnu_cxx::_Lock_policy)2>::_Sp_counted_ptr_inplace<unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:545 (rocketjoed+0x122eba5)
rocketjoe_jupyter_1 | 2: #4 std::__shared_count<(__gnu_cxx::_Lock_policy)2>::__shared_count<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(spdlog::details::thread_pool*&, std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:677 (rocketjoed+0x122dea2)
rocketjoe_jupyter_1 | 2: #5 std::__shared_ptr<spdlog::details::thread_pool, (__gnu_cxx::_Lock_policy)2>::__shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:1342 (rocketjoed+0x122d611)
rocketjoe_jupyter_1 | 2: #6 std::shared_ptr<spdlog::details::thread_pool>::shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:359 (rocketjoed+0x122ce59)
rocketjoe_jupyter_1 | 2: #7 std::shared_ptr<spdlog::details::thread_pool> std::allocate_shared<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool> const&, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:706 (rocketjoed+0x122c1fe)
rocketjoe_jupyter_1 | 2: #8 std::shared_ptr<spdlog::details::thread_pool> std::make_shared<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:722 (rocketjoed+0x122b3de)
rocketjoe_jupyter_1 | 2: #9 spdlog::init_thread_pool(unsigned long, unsigned long, std::function<void ()>) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:78 (rocketjoed+0x122af71)
rocketjoe_jupyter_1 | 2: #10 spdlog::init_thread_pool(unsigned long, unsigned long) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:85 (rocketjoed+0x122b0b3)
rocketjoe_jupyter_1 | 2: #11 components::initialization_logger() ../components/log/log.cpp:32 (rocketjoed+0x122a4ec)
rocketjoe_jupyter_1 | 2: #12 main ../apps/rocketjoed/main.cpp:71 (rocketjoed+0xd11600)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2b783) in strncpy
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=14)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000810 by main thread:
rocketjoe_jupyter_1 | 2: #0 open64 <null> (libtsan.so.0+0x2de81)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0xdf106)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:34 (rocketjoed+0x11dabca)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:273 (rocketjoed+0xf5e8ce)
rocketjoe_jupyter_1 | 2: #4 main ../apps/rocketjoed/main.cpp:199 (rocketjoed+0xd130e6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000810 by thread T1:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 std::__shared_ptr<spdlog::async_logger, (__gnu_cxx::_Lock_policy)2>::~__shared_ptr() /usr/include/c++/8/bits/shared_ptr_base.h:1167 (rocketjoed+0xe899ef)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=21, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 void std::allocator_traits<std::allocator<spdlog::details::thread_pool> >::construct<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>&, spdlog::details::thread_pool*, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/alloc_traits.h:475 (rocketjoed+0x122fe7c)
rocketjoe_jupyter_1 | 2: #3 std::_Sp_counted_ptr_inplace<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, (__gnu_cxx::_Lock_policy)2>::_Sp_counted_ptr_inplace<unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:545 (rocketjoed+0x122eba5)
rocketjoe_jupyter_1 | 2: #4 std::__shared_count<(__gnu_cxx::_Lock_policy)2>::__shared_count<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(spdlog::details::thread_pool*&, std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:677 (rocketjoed+0x122dea2)
rocketjoe_jupyter_1 | 2: #5 std::__shared_ptr<spdlog::details::thread_pool, (__gnu_cxx::_Lock_policy)2>::__shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:1342 (rocketjoed+0x122d611)
rocketjoe_jupyter_1 | 2: #6 std::shared_ptr<spdlog::details::thread_pool>::shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:359 (rocketjoed+0x122ce59)
rocketjoe_jupyter_1 | 2: #7 std::shared_ptr<spdlog::details::thread_pool> std::allocate_shared<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool> const&, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:706 (rocketjoed+0x122c1fe)
rocketjoe_jupyter_1 | 2: #8 std::shared_ptr<spdlog::details::thread_pool> std::make_shared<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:722 (rocketjoed+0x122b3de)
rocketjoe_jupyter_1 | 2: #9 spdlog::init_thread_pool(unsigned long, unsigned long, std::function<void ()>) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:78 (rocketjoed+0x122af71)
rocketjoe_jupyter_1 | 2: #10 spdlog::init_thread_pool(unsigned long, unsigned long) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:85 (rocketjoed+0x122b0b3)
rocketjoe_jupyter_1 | 2: #11 components::initialization_logger() ../components/log/log.cpp:32 (rocketjoed+0x122a4ec)
rocketjoe_jupyter_1 | 2: #12 main ../apps/rocketjoed/main.cpp:71 (rocketjoed+0xd11600)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2de81) in __interceptor_open64
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 37415,
rocketjoe_jupyter_1 | 2: "hb_port": 60399,
rocketjoe_jupyter_1 | 2: "iopub_port": 37321,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "kernel_name": "rocketjoe",
rocketjoe_jupyter_1 | 2: "key": "7bc7856e-09d0729eb64f8a26a5514290",
rocketjoe_jupyter_1 | 2: "shell_port": 43617,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 49541,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ____________ ERROR at setup of RocketJoePythonTests.test_completion ____________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fba99480a20>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: ___________ ERROR at setup of RocketJoePythonTests.test_display_data ___________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fba99480a20>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: ______________ ERROR at setup of RocketJoePythonTests.test_error _______________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fba99480a20>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: __________ ERROR at setup of RocketJoePythonTests.test_execute_result __________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fba99480a20>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: __________ ERROR at setup of RocketJoePythonTests.test_execute_stderr __________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fba99480a20>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: __________ ERROR at setup of RocketJoePythonTests.test_execute_stdout __________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fba99480a20>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: _____________ ERROR at setup of RocketJoePythonTests.test_history ______________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fba99480a20>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: _____________ ERROR at setup of RocketJoePythonTests.test_inspect ______________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fba99480a20>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: ___________ ERROR at setup of RocketJoePythonTests.test_is_complete ____________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fba99480a20>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: ___________ ERROR at setup of RocketJoePythonTests.test_kernel_info ____________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fba99480a20>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: ______________ ERROR at setup of RocketJoePythonTests.test_pager _______________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: cls = <class 'test_jupyter_kernel.RocketJoePythonTests'>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: @classmethod
rocketjoe_jupyter_1 | 2: def setUpClass(cls):
rocketjoe_jupyter_1 | 2: > cls.km, cls.kc = start_new_kernel(kernel_name=cls.kernel_name)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_test/__init__.py:19:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/manager.py:749: in start_new_kernel
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_client.blocking.client.BlockingKernelClient object at 0x7fba99480a20>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: """Waits for a response when a client is blocked
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: - Sets future time for timeout
rocketjoe_jupyter_1 | 2: - Blocks on shell channel until a message is received
rocketjoe_jupyter_1 | 2: - Exit if the kernel has died
rocketjoe_jupyter_1 | 2: - If client times out before receiving a message from the kernel, send RuntimeError
rocketjoe_jupyter_1 | 2: - Flush the IOPub channel
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: if timeout is None:
rocketjoe_jupyter_1 | 2: abs_timeout = float('inf')
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: abs_timeout = time.time() + timeout
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: from ..manager import KernelManager
rocketjoe_jupyter_1 | 2: if not isinstance(self.parent, KernelManager):
rocketjoe_jupyter_1 | 2: # This Client was not created by a KernelManager,
rocketjoe_jupyter_1 | 2: # so wait for kernel to become responsive to heartbeats
rocketjoe_jupyter_1 | 2: # before checking for kernel_info reply
rocketjoe_jupyter_1 | 2: while not self.is_alive():
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: raise RuntimeError("Kernel didn't respond to heartbeats in %d seconds and timed out" % timeout)
rocketjoe_jupyter_1 | 2: time.sleep(0.2)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Wait for kernel info reply on shell channel
rocketjoe_jupyter_1 | 2: while True:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: msg = self.shell_channel.get_msg(block=True, timeout=1)
rocketjoe_jupyter_1 | 2: except Empty:
rocketjoe_jupyter_1 | 2: pass
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if msg['msg_type'] == 'kernel_info_reply':
rocketjoe_jupyter_1 | 2: self._handle_kernel_info_reply(msg)
rocketjoe_jupyter_1 | 2: break
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if not self.is_alive():
rocketjoe_jupyter_1 | 2: raise RuntimeError('Kernel died before replying to kernel_info')
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: # Check if current time is ready check time plus timeout
rocketjoe_jupyter_1 | 2: if time.time() > abs_timeout:
rocketjoe_jupyter_1 | 2: > raise RuntimeError("Kernel didn't respond in %d seconds" % timeout)
rocketjoe_jupyter_1 | 2: E RuntimeError: Kernel didn't respond in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_client/blocking/client.py:108: RuntimeError
rocketjoe_jupyter_1 | 2: =================================== FAILURES ===================================
rocketjoe_jupyter_1 | 2: ______________________ test_rocketjoe_kernel_info_request ______________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fba95f9b1d0>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7fba95e690f0>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7fba95fb9510>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7fba95f44eb8>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_kernel_info_request(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:71:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fba95f9b1d0>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 15:39:26.003] [__default__] [info] [pid 43 tid 43]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 15:39:26.003] [__default__] [info] [pid 43 tid 43] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-44450e22-1162ebf8b495e68503c61d7e.json
rocketjoe_jupyter_1 | 2: [2020-06-25 15:39:26.003] [__default__] [info] [pid 43 tid 43] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 15:39:26.030] [__default__] [info] [pid 43 tid 43] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 15:39:26.030] [__default__] [info] [pid 43 tid 43] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 15:39:26.030] [__default__] [info] [pid 43 tid 43] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-44450e22-1162ebf8b495e68503c61d7e.json
rocketjoe_jupyter_1 | 2: [2020-06-25 15:39:26.030] [__default__] [info] [pid 43 tid 43] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 15:39:26.888] [__default__] [info] [pid 43 tid 43] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=43)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002b0 by thread T1:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 std::__shared_ptr<spdlog::async_logger, (__gnu_cxx::_Lock_policy)2>::~__shared_ptr() /usr/include/c++/8/bits/shared_ptr_base.h:1167 (rocketjoed+0xe899ef)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002b0 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 bool boost::typeindex::operator==<boost::typeindex::stl_type_index, std::type_info>(boost::typeindex::type_index_facade<boost::typeindex::stl_type_index, std::type_info> const&, boost::typeindex::type_index_facade<boost::typeindex::stl_type_index, std::type_info> const&) <null> (rocketjoed+0xd50200)
rocketjoe_jupyter_1 | 2: #3 bool boost::typeindex::operator==<boost::typeindex::stl_type_index, std::type_info>(std::type_info const&, boost::typeindex::type_index_facade<boost::typeindex::stl_type_index, std::type_info> const&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/type_index/type_index_facade.hpp:188 (rocketjoed+0xd48607)
rocketjoe_jupyter_1 | 2: #4 boost::filesystem::path const* boost::any_cast<boost::filesystem::path const>(boost::any*) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/any.hpp:251 (rocketjoed+0xd429c5)
rocketjoe_jupyter_1 | 2: #5 boost::filesystem::path const& boost::any_cast<boost::filesystem::path const&>(boost::any&) <null> (rocketjoed+0xd38315)
rocketjoe_jupyter_1 | 2: #6 boost::filesystem::path const& boost::any_cast<boost::filesystem::path const&>(boost::any const&) <null> (rocketjoed+0xd2e1bb)
rocketjoe_jupyter_1 | 2: #7 boost::filesystem::path const& boost::program_options::variable_value::as<boost::filesystem::path>() const <null> (rocketjoed+0xd26acc)
rocketjoe_jupyter_1 | 2: #8 main ../apps/rocketjoed/main.cpp:181 (rocketjoed+0xd12e7d)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=45, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 void std::allocator_traits<std::allocator<spdlog::details::thread_pool> >::construct<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>&, spdlog::details::thread_pool*, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/alloc_traits.h:475 (rocketjoed+0x122fe7c)
rocketjoe_jupyter_1 | 2: #3 std::_Sp_counted_ptr_inplace<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, (__gnu_cxx::_Lock_policy)2>::_Sp_counted_ptr_inplace<unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:545 (rocketjoed+0x122eba5)
rocketjoe_jupyter_1 | 2: #4 std::__shared_count<(__gnu_cxx::_Lock_policy)2>::__shared_count<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(spdlog::details::thread_pool*&, std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:677 (rocketjoed+0x122dea2)
rocketjoe_jupyter_1 | 2: #5 std::__shared_ptr<spdlog::details::thread_pool, (__gnu_cxx::_Lock_policy)2>::__shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:1342 (rocketjoed+0x122d611)
rocketjoe_jupyter_1 | 2: #6 std::shared_ptr<spdlog::details::thread_pool>::shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:359 (rocketjoed+0x122ce59)
rocketjoe_jupyter_1 | 2: #7 std::shared_ptr<spdlog::details::thread_pool> std::allocate_shared<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool> const&, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:706 (rocketjoed+0x122c1fe)
rocketjoe_jupyter_1 | 2: #8 std::shared_ptr<spdlog::details::thread_pool> std::make_shared<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:722 (rocketjoed+0x122b3de)
rocketjoe_jupyter_1 | 2: #9 spdlog::init_thread_pool(unsigned long, unsigned long, std::function<void ()>) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:78 (rocketjoed+0x122af71)
rocketjoe_jupyter_1 | 2: #10 spdlog::init_thread_pool(unsigned long, unsigned long) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:85 (rocketjoed+0x122b0b3)
rocketjoe_jupyter_1 | 2: #11 components::initialization_logger() ../components/log/log.cpp:32 (rocketjoed+0x122a4ec)
rocketjoe_jupyter_1 | 2: #12 main ../apps/rocketjoed/main.cpp:71 (rocketjoed+0xd11600)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=43)
rocketjoe_jupyter_1 | 2: Read of size 1 at 0x7b0800001010 by main thread:
rocketjoe_jupyter_1 | 2: #0 strncpy <null> (libtsan.so.0+0x2b783)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0x81f63)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:27 (rocketjoed+0x11daacf)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:273 (rocketjoed+0xf5e8ce)
rocketjoe_jupyter_1 | 2: #4 main ../apps/rocketjoed/main.cpp:199 (rocketjoed+0xd130e6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0800001010 by thread T1 (mutexes: write M89):
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 __tzstring_len /build/glibc-vjB4T1/glibc-2.28/time/tzset.c:99 (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0xe51956)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Location is heap block of size 20 at 0x7b0800001000 allocated by thread T1:
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 __tzstring_len /build/glibc-vjB4T1/glibc-2.28/time/tzset.c:99 (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0xe51956)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M89 (0x555576ca1860) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0xcfb26f)
rocketjoe_jupyter_1 | 2: #2 std::mutex::lock() /usr/include/c++/8/bits/std_mutex.h:103 (rocketjoed+0xcfe203)
rocketjoe_jupyter_1 | 2: #3 std::lock_guard<std::mutex>::lock_guard(std::mutex&) /usr/include/c++/8/bits/std_mutex.h:162 (rocketjoed+0xd09fbd)
rocketjoe_jupyter_1 | 2: #4 spdlog::sinks::ansicolor_sink<spdlog::details::console_mutex>::set_formatter(std::unique_ptr<spdlog::formatter, std::default_delete<spdlog::formatter> >) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/sinks/ansicolor_sink-inl.h:84 (rocketjoed+0xe8a592)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:71 (rocketjoed+0xd11600)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=45, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 void std::allocator_traits<std::allocator<spdlog::details::thread_pool> >::construct<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>&, spdlog::details::thread_pool*, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/alloc_traits.h:475 (rocketjoed+0x122fe7c)
rocketjoe_jupyter_1 | 2: #3 std::_Sp_counted_ptr_inplace<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, (__gnu_cxx::_Lock_policy)2>::_Sp_counted_ptr_inplace<unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:545 (rocketjoed+0x122eba5)
rocketjoe_jupyter_1 | 2: #4 std::__shared_count<(__gnu_cxx::_Lock_policy)2>::__shared_count<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(spdlog::details::thread_pool*&, std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:677 (rocketjoed+0x122dea2)
rocketjoe_jupyter_1 | 2: #5 std::__shared_ptr<spdlog::details::thread_pool, (__gnu_cxx::_Lock_policy)2>::__shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:1342 (rocketjoed+0x122d611)
rocketjoe_jupyter_1 | 2: #6 std::shared_ptr<spdlog::details::thread_pool>::shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:359 (rocketjoed+0x122ce59)
rocketjoe_jupyter_1 | 2: #7 std::shared_ptr<spdlog::details::thread_pool> std::allocate_shared<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool> const&, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:706 (rocketjoed+0x122c1fe)
rocketjoe_jupyter_1 | 2: #8 std::shared_ptr<spdlog::details::thread_pool> std::make_shared<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:722 (rocketjoed+0x122b3de)
rocketjoe_jupyter_1 | 2: #9 spdlog::init_thread_pool(unsigned long, unsigned long, std::function<void ()>) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:78 (rocketjoed+0x122af71)
rocketjoe_jupyter_1 | 2: #10 spdlog::init_thread_pool(unsigned long, unsigned long) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:85 (rocketjoed+0x122b0b3)
rocketjoe_jupyter_1 | 2: #11 components::initialization_logger() ../components/log/log.cpp:32 (rocketjoed+0x122a4ec)
rocketjoe_jupyter_1 | 2: #12 main ../apps/rocketjoed/main.cpp:71 (rocketjoed+0xd11600)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2b783) in strncpy
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=43)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000810 by main thread:
rocketjoe_jupyter_1 | 2: #0 open64 <null> (libtsan.so.0+0x2de81)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0xdf106)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:34 (rocketjoed+0x11dabca)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:273 (rocketjoed+0xf5e8ce)
rocketjoe_jupyter_1 | 2: #4 main ../apps/rocketjoed/main.cpp:199 (rocketjoed+0xd130e6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000810 by thread T1:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 std::__shared_ptr<spdlog::async_logger, (__gnu_cxx::_Lock_policy)2>::~__shared_ptr() /usr/include/c++/8/bits/shared_ptr_base.h:1167 (rocketjoed+0xe899ef)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=45, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 void std::allocator_traits<std::allocator<spdlog::details::thread_pool> >::construct<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>&, spdlog::details::thread_pool*, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/alloc_traits.h:475 (rocketjoed+0x122fe7c)
rocketjoe_jupyter_1 | 2: #3 std::_Sp_counted_ptr_inplace<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, (__gnu_cxx::_Lock_policy)2>::_Sp_counted_ptr_inplace<unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:545 (rocketjoed+0x122eba5)
rocketjoe_jupyter_1 | 2: #4 std::__shared_count<(__gnu_cxx::_Lock_policy)2>::__shared_count<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(spdlog::details::thread_pool*&, std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:677 (rocketjoed+0x122dea2)
rocketjoe_jupyter_1 | 2: #5 std::__shared_ptr<spdlog::details::thread_pool, (__gnu_cxx::_Lock_policy)2>::__shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:1342 (rocketjoed+0x122d611)
rocketjoe_jupyter_1 | 2: #6 std::shared_ptr<spdlog::details::thread_pool>::shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:359 (rocketjoed+0x122ce59)
rocketjoe_jupyter_1 | 2: #7 std::shared_ptr<spdlog::details::thread_pool> std::allocate_shared<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool> const&, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:706 (rocketjoed+0x122c1fe)
rocketjoe_jupyter_1 | 2: #8 std::shared_ptr<spdlog::details::thread_pool> std::make_shared<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:722 (rocketjoed+0x122b3de)
rocketjoe_jupyter_1 | 2: #9 spdlog::init_thread_pool(unsigned long, unsigned long, std::function<void ()>) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:78 (rocketjoed+0x122af71)
rocketjoe_jupyter_1 | 2: #10 spdlog::init_thread_pool(unsigned long, unsigned long) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:85 (rocketjoed+0x122b0b3)
rocketjoe_jupyter_1 | 2: #11 components::initialization_logger() ../components/log/log.cpp:32 (rocketjoed+0x122a4ec)
rocketjoe_jupyter_1 | 2: #12 main ../apps/rocketjoed/main.cpp:71 (rocketjoed+0xd11600)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2de81) in __interceptor_open64
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 51447,
rocketjoe_jupyter_1 | 2: "hb_port": 52031,
rocketjoe_jupyter_1 | 2: "iopub_port": 53195,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "ab89317e-ae4044b1ba0933c7b87a085d",
rocketjoe_jupyter_1 | 2: "shell_port": 60407,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 37117,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=43)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400001000 by main thread:
rocketjoe_jupyter_1 | 2: #0 fopen <null> (libtsan.so.0+0x459fe)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libnss_files.so.2+0x67c2)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::detail::jupyter::interpreter_impl::publish_status(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:758 (rocketjoed+0x1051ce7)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::detail::jupyter::interpreter_impl::interpreter_impl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool, boost::uuids::uuid) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:576 (rocketjoed+0x104d67f)
rocketjoe_jupyter_1 | 2: #4 std::_MakeUniq<rocketjoe::services::detail::jupyter::interpreter_impl>::__single_object std::make_unique<rocketjoe::services::detail::jupyter::interpreter_impl, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool&, boost::uuids::uuid>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, zmq::socket_t&&, zmq::socket_t&&, boost::optional<zmq::socket_t>&&, zmq::socket_t&&, boost::optional<zmq::socket_t>&&, boost::optional<zmq::socket_t>&&, bool&, boost::uuids::uuid&&) <null> (rocketjoed+0x109494f)
rocketjoe_jupyter_1 | 2: #5 rocketjoe::services::detail::jupyter::pykernel::pykernel(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool, boost::uuids::uuid) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:1659 (rocketjoed+0x106c029)
rocketjoe_jupyter_1 | 2: #6 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:137 (rocketjoed+0xf5ae62)
rocketjoe_jupyter_1 | 2: #7 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:280 (rocketjoed+0xf5ed78)
rocketjoe_jupyter_1 | 2: #8 main ../apps/rocketjoed/main.cpp:199 (rocketjoed+0xd130e6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400001000 by thread T4:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 std::ostreambuf_iterator<char, std::char_traits<char> > boost::locale::util::base_num_format<char>::do_real_put<long>(std::ostreambuf_iterator<char, std::char_traits<char> >, std::ios_base&, char, long) const libs/locale/src/std/../util/numeric.hpp:125 (rocketjoed+0xee5844)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T4 'ZMQbg/IO/0' (tid=50, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 zmq::thread_t::start(void (*)(void*), void*, char const*) /home/conan/.conan/data/zmq/4.3.2/bincrafters/stable/build/9d43b0a6dcf99be58f9186c18969d7b3c0292752/sources_subfolder/src/thread.cpp:236 (rocketjoed+0x12712e9)
rocketjoe_jupyter_1 | 2: #2 zmq::socket_t::socket_t(zmq::context_t&, zmq::socket_type) <null> (rocketjoed+0xf861ef)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:105 (rocketjoed+0xf5a2af)
rocketjoe_jupyter_1 | 2: #4 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:280 (rocketjoed+0xf5ed78)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:199 (rocketjoed+0xd130e6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x459fe) in __interceptor_fopen
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: _______________________ test_rocketjoe_execute_request_1 _______________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fba95f3fc18>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7fba95e690f0>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7fba9ba6ae18>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7fba95f3f208>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_execute_request_1(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:81:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fba95f3fc18>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 15:40:33.029] [__default__] [info] [pid 64 tid 64]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 15:40:33.030] [__default__] [info] [pid 64 tid 64] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-9348f93a-73881de062658a024d308d89.json
rocketjoe_jupyter_1 | 2: [2020-06-25 15:40:33.030] [__default__] [info] [pid 64 tid 64] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 15:40:33.059] [__default__] [info] [pid 64 tid 64] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 15:40:33.059] [__default__] [info] [pid 64 tid 64] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 15:40:33.059] [__default__] [info] [pid 64 tid 64] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-9348f93a-73881de062658a024d308d89.json
rocketjoe_jupyter_1 | 2: [2020-06-25 15:40:33.059] [__default__] [info] [pid 64 tid 64] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 15:40:33.923] [__default__] [info] [pid 64 tid 64] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=64)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002b0 by thread T1:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 std::__shared_ptr<spdlog::async_logger, (__gnu_cxx::_Lock_policy)2>::~__shared_ptr() /usr/include/c++/8/bits/shared_ptr_base.h:1167 (rocketjoed+0xe899ef)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002b0 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 bool boost::typeindex::operator==<boost::typeindex::stl_type_index, std::type_info>(boost::typeindex::type_index_facade<boost::typeindex::stl_type_index, std::type_info> const&, boost::typeindex::type_index_facade<boost::typeindex::stl_type_index, std::type_info> const&) <null> (rocketjoed+0xd50200)
rocketjoe_jupyter_1 | 2: #3 bool boost::typeindex::operator==<boost::typeindex::stl_type_index, std::type_info>(std::type_info const&, boost::typeindex::type_index_facade<boost::typeindex::stl_type_index, std::type_info> const&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/type_index/type_index_facade.hpp:188 (rocketjoed+0xd48607)
rocketjoe_jupyter_1 | 2: #4 boost::filesystem::path const* boost::any_cast<boost::filesystem::path const>(boost::any*) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/any.hpp:251 (rocketjoed+0xd429c5)
rocketjoe_jupyter_1 | 2: #5 boost::filesystem::path const& boost::any_cast<boost::filesystem::path const&>(boost::any&) <null> (rocketjoed+0xd38315)
rocketjoe_jupyter_1 | 2: #6 boost::filesystem::path const& boost::any_cast<boost::filesystem::path const&>(boost::any const&) <null> (rocketjoed+0xd2e1bb)
rocketjoe_jupyter_1 | 2: #7 boost::filesystem::path const& boost::program_options::variable_value::as<boost::filesystem::path>() const <null> (rocketjoed+0xd26acc)
rocketjoe_jupyter_1 | 2: #8 main ../apps/rocketjoed/main.cpp:181 (rocketjoed+0xd12e7d)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=66, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 void std::allocator_traits<std::allocator<spdlog::details::thread_pool> >::construct<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>&, spdlog::details::thread_pool*, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/alloc_traits.h:475 (rocketjoed+0x122fe7c)
rocketjoe_jupyter_1 | 2: #3 std::_Sp_counted_ptr_inplace<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, (__gnu_cxx::_Lock_policy)2>::_Sp_counted_ptr_inplace<unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:545 (rocketjoed+0x122eba5)
rocketjoe_jupyter_1 | 2: #4 std::__shared_count<(__gnu_cxx::_Lock_policy)2>::__shared_count<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(spdlog::details::thread_pool*&, std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:677 (rocketjoed+0x122dea2)
rocketjoe_jupyter_1 | 2: #5 std::__shared_ptr<spdlog::details::thread_pool, (__gnu_cxx::_Lock_policy)2>::__shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:1342 (rocketjoed+0x122d611)
rocketjoe_jupyter_1 | 2: #6 std::shared_ptr<spdlog::details::thread_pool>::shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:359 (rocketjoed+0x122ce59)
rocketjoe_jupyter_1 | 2: #7 std::shared_ptr<spdlog::details::thread_pool> std::allocate_shared<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool> const&, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:706 (rocketjoed+0x122c1fe)
rocketjoe_jupyter_1 | 2: #8 std::shared_ptr<spdlog::details::thread_pool> std::make_shared<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:722 (rocketjoed+0x122b3de)
rocketjoe_jupyter_1 | 2: #9 spdlog::init_thread_pool(unsigned long, unsigned long, std::function<void ()>) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:78 (rocketjoed+0x122af71)
rocketjoe_jupyter_1 | 2: #10 spdlog::init_thread_pool(unsigned long, unsigned long) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:85 (rocketjoed+0x122b0b3)
rocketjoe_jupyter_1 | 2: #11 components::initialization_logger() ../components/log/log.cpp:32 (rocketjoed+0x122a4ec)
rocketjoe_jupyter_1 | 2: #12 main ../apps/rocketjoed/main.cpp:71 (rocketjoed+0xd11600)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=64)
rocketjoe_jupyter_1 | 2: Read of size 1 at 0x7b0800001010 by main thread:
rocketjoe_jupyter_1 | 2: #0 strncpy <null> (libtsan.so.0+0x2b783)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0x81f63)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:27 (rocketjoed+0x11daacf)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:273 (rocketjoed+0xf5e8ce)
rocketjoe_jupyter_1 | 2: #4 main ../apps/rocketjoed/main.cpp:199 (rocketjoed+0xd130e6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0800001010 by thread T1 (mutexes: write M89):
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 __tzstring_len /build/glibc-vjB4T1/glibc-2.28/time/tzset.c:99 (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0xe51956)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Location is heap block of size 20 at 0x7b0800001000 allocated by thread T1:
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 __tzstring_len /build/glibc-vjB4T1/glibc-2.28/time/tzset.c:99 (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0xe51956)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M89 (0x555a87166860) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0xcfb26f)
rocketjoe_jupyter_1 | 2: #2 std::mutex::lock() /usr/include/c++/8/bits/std_mutex.h:103 (rocketjoed+0xcfe203)
rocketjoe_jupyter_1 | 2: #3 std::lock_guard<std::mutex>::lock_guard(std::mutex&) /usr/include/c++/8/bits/std_mutex.h:162 (rocketjoed+0xd09fbd)
rocketjoe_jupyter_1 | 2: #4 spdlog::sinks::ansicolor_sink<spdlog::details::console_mutex>::set_formatter(std::unique_ptr<spdlog::formatter, std::default_delete<spdlog::formatter> >) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/sinks/ansicolor_sink-inl.h:84 (rocketjoed+0xe8a592)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:71 (rocketjoed+0xd11600)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=66, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 void std::allocator_traits<std::allocator<spdlog::details::thread_pool> >::construct<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>&, spdlog::details::thread_pool*, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/alloc_traits.h:475 (rocketjoed+0x122fe7c)
rocketjoe_jupyter_1 | 2: #3 std::_Sp_counted_ptr_inplace<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, (__gnu_cxx::_Lock_policy)2>::_Sp_counted_ptr_inplace<unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:545 (rocketjoed+0x122eba5)
rocketjoe_jupyter_1 | 2: #4 std::__shared_count<(__gnu_cxx::_Lock_policy)2>::__shared_count<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(spdlog::details::thread_pool*&, std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:677 (rocketjoed+0x122dea2)
rocketjoe_jupyter_1 | 2: #5 std::__shared_ptr<spdlog::details::thread_pool, (__gnu_cxx::_Lock_policy)2>::__shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:1342 (rocketjoed+0x122d611)
rocketjoe_jupyter_1 | 2: #6 std::shared_ptr<spdlog::details::thread_pool>::shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:359 (rocketjoed+0x122ce59)
rocketjoe_jupyter_1 | 2: #7 std::shared_ptr<spdlog::details::thread_pool> std::allocate_shared<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool> const&, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:706 (rocketjoed+0x122c1fe)
rocketjoe_jupyter_1 | 2: #8 std::shared_ptr<spdlog::details::thread_pool> std::make_shared<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:722 (rocketjoed+0x122b3de)
rocketjoe_jupyter_1 | 2: #9 spdlog::init_thread_pool(unsigned long, unsigned long, std::function<void ()>) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:78 (rocketjoed+0x122af71)
rocketjoe_jupyter_1 | 2: #10 spdlog::init_thread_pool(unsigned long, unsigned long) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:85 (rocketjoed+0x122b0b3)
rocketjoe_jupyter_1 | 2: #11 components::initialization_logger() ../components/log/log.cpp:32 (rocketjoed+0x122a4ec)
rocketjoe_jupyter_1 | 2: #12 main ../apps/rocketjoed/main.cpp:71 (rocketjoed+0xd11600)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2b783) in strncpy
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=64)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000810 by main thread:
rocketjoe_jupyter_1 | 2: #0 open64 <null> (libtsan.so.0+0x2de81)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0xdf106)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:34 (rocketjoed+0x11dabca)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:273 (rocketjoed+0xf5e8ce)
rocketjoe_jupyter_1 | 2: #4 main ../apps/rocketjoed/main.cpp:199 (rocketjoed+0xd130e6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000810 by thread T1:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 std::__shared_ptr<spdlog::async_logger, (__gnu_cxx::_Lock_policy)2>::~__shared_ptr() /usr/include/c++/8/bits/shared_ptr_base.h:1167 (rocketjoed+0xe899ef)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=66, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 void std::allocator_traits<std::allocator<spdlog::details::thread_pool> >::construct<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>&, spdlog::details::thread_pool*, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/alloc_traits.h:475 (rocketjoed+0x122fe7c)
rocketjoe_jupyter_1 | 2: #3 std::_Sp_counted_ptr_inplace<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, (__gnu_cxx::_Lock_policy)2>::_Sp_counted_ptr_inplace<unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:545 (rocketjoed+0x122eba5)
rocketjoe_jupyter_1 | 2: #4 std::__shared_count<(__gnu_cxx::_Lock_policy)2>::__shared_count<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(spdlog::details::thread_pool*&, std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:677 (rocketjoed+0x122dea2)
rocketjoe_jupyter_1 | 2: #5 std::__shared_ptr<spdlog::details::thread_pool, (__gnu_cxx::_Lock_policy)2>::__shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:1342 (rocketjoed+0x122d611)
rocketjoe_jupyter_1 | 2: #6 std::shared_ptr<spdlog::details::thread_pool>::shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:359 (rocketjoed+0x122ce59)
rocketjoe_jupyter_1 | 2: #7 std::shared_ptr<spdlog::details::thread_pool> std::allocate_shared<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool> const&, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:706 (rocketjoed+0x122c1fe)
rocketjoe_jupyter_1 | 2: #8 std::shared_ptr<spdlog::details::thread_pool> std::make_shared<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:722 (rocketjoed+0x122b3de)
rocketjoe_jupyter_1 | 2: #9 spdlog::init_thread_pool(unsigned long, unsigned long, std::function<void ()>) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:78 (rocketjoed+0x122af71)
rocketjoe_jupyter_1 | 2: #10 spdlog::init_thread_pool(unsigned long, unsigned long) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:85 (rocketjoed+0x122b0b3)
rocketjoe_jupyter_1 | 2: #11 components::initialization_logger() ../components/log/log.cpp:32 (rocketjoed+0x122a4ec)
rocketjoe_jupyter_1 | 2: #12 main ../apps/rocketjoed/main.cpp:71 (rocketjoed+0xd11600)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2de81) in __interceptor_open64
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 43063,
rocketjoe_jupyter_1 | 2: "hb_port": 48263,
rocketjoe_jupyter_1 | 2: "iopub_port": 34163,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "2ab76086-9e0b9ca60aade51fbad3a0b8",
rocketjoe_jupyter_1 | 2: "shell_port": 38895,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 49335,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=64)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400001000 by main thread:
rocketjoe_jupyter_1 | 2: #0 open64 <null> (libtsan.so.0+0x2de81)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0xdf106)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::detail::jupyter::shell::init_hooks(pybind11::object) ../components/python_sandbox/source/detail/jupyter/shell.cpp:33 (rocketjoed+0x1151565)
rocketjoe_jupyter_1 | 2: #3 void pybind11::detail::argument_loader<pybind11::object>::call_impl<void, void (*&)(pybind11::object), 0ul, pybind11::detail::void_type>(void (*&)(pybind11::object), std::integer_sequence<unsigned long, 0ul>, pybind11::detail::void_type&&) /root/.conan/data/pybind11/2.3.0/conan/stable/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/pybind11/cast.h:1931 (rocketjoed+0x11f5776)
rocketjoe_jupyter_1 | 2: #4 std::enable_if<std::is_void<void>::value, pybind11::detail::void_type>::type pybind11::detail::argument_loader<pybind11::object>::call<void, pybind11::detail::void_type, void (*&)(pybind11::object)>(void (*&)(pybind11::object)) && /root/.conan/data/pybind11/2.3.0/conan/stable/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/pybind11/cast.h:1913 (rocketjoed+0x11f0742)
rocketjoe_jupyter_1 | 2: #5 pybind11::cpp_function::initialize<void (*&)(pybind11::object), void, pybind11::object, pybind11::is_method>(void (*&)(pybind11::object), void (*)(pybind11::object), pybind11::is_method const&)::{lambda(pybind11::detail::function_call&)#3}::operator()(pybind11::detail::function_call&) const /root/.conan/data/pybind11/2.3.0/conan/stable/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/pybind11/pybind11.h:160 (rocketjoed+0x11e57b9)
rocketjoe_jupyter_1 | 2: #6 pybind11::cpp_function::initialize<void (*&)(pybind11::object), void, pybind11::object, pybind11::is_method>(void (*&)(pybind11::object), void (*)(pybind11::object), pybind11::is_method const&)::{lambda(pybind11::detail::function_call&)#3}::_FUN(pybind11::detail::function_call&) /root/.conan/data/pybind11/2.3.0/conan/stable/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/pybind11/pybind11.h:138 (rocketjoed+0x11e58a4)
rocketjoe_jupyter_1 | 2: #7 pybind11::cpp_function::dispatcher(_object*, _object*, _object*) /root/.conan/data/pybind11/2.3.0/conan/stable/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/pybind11/pybind11.h:625 (rocketjoed+0xf801ed)
rocketjoe_jupyter_1 | 2: #8 _PyMethodDef_RawFastCallKeywords <null> (libpython3.7m.so.1.0+0x274cda)
rocketjoe_jupyter_1 | 2: #9 pybind11::object pybind11::detail::object_api<pybind11::detail::accessor<pybind11::detail::accessor_policies::str_attr> >::operator()<(pybind11::return_value_policy)1, pybind11::arg_v>(pybind11::arg_v&&) const /root/.conan/data/pybind11/2.3.0/conan/stable/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/pybind11/cast.h:2108 (rocketjoed+0x1088a7a)
rocketjoe_jupyter_1 | 2: #10 rocketjoe::services::detail::jupyter::interpreter_impl::interpreter_impl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool, boost::uuids::uuid) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:515 (rocketjoed+0x104b4df)
rocketjoe_jupyter_1 | 2: #11 std::_MakeUniq<rocketjoe::services::detail::jupyter::interpreter_impl>::__single_object std::make_unique<rocketjoe::services::detail::jupyter::interpreter_impl, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool&, boost::uuids::uuid>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, zmq::socket_t&&, zmq::socket_t&&, boost::optional<zmq::socket_t>&&, zmq::socket_t&&, boost::optional<zmq::socket_t>&&, boost::optional<zmq::socket_t>&&, bool&, boost::uuids::uuid&&) <null> (rocketjoed+0x109494f)
rocketjoe_jupyter_1 | 2: #12 rocketjoe::services::detail::jupyter::pykernel::pykernel(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool, boost::uuids::uuid) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:1659 (rocketjoed+0x106c029)
rocketjoe_jupyter_1 | 2: #13 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:137 (rocketjoed+0xf5ae62)
rocketjoe_jupyter_1 | 2: #14 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:280 (rocketjoed+0xf5ed78)
rocketjoe_jupyter_1 | 2: #15 main ../apps/rocketjoed/main.cpp:199 (rocketjoed+0xd130e6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400001000 by thread T4:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 std::ostreambuf_iterator<char, std::char_traits<char> > boost::locale::util::base_num_format<char>::do_real_put<long>(std::ostreambuf_iterator<char, std::char_traits<char> >, std::ios_base&, char, long) const libs/locale/src/std/../util/numeric.hpp:125 (rocketjoed+0xee5844)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T4 'ZMQbg/IO/0' (tid=71, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 zmq::thread_t::start(void (*)(void*), void*, char const*) /home/conan/.conan/data/zmq/4.3.2/bincrafters/stable/build/9d43b0a6dcf99be58f9186c18969d7b3c0292752/sources_subfolder/src/thread.cpp:236 (rocketjoed+0x12712e9)
rocketjoe_jupyter_1 | 2: #2 zmq::socket_t::socket_t(zmq::context_t&, zmq::socket_type) <null> (rocketjoed+0xf861ef)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:105 (rocketjoed+0xf5a2af)
rocketjoe_jupyter_1 | 2: #4 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:280 (rocketjoed+0xf5ed78)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:199 (rocketjoed+0xd130e6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2de81) in __interceptor_open64
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: _______________________ test_rocketjoe_execute_request_2 _______________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fba95edfba8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7fba95e690f0>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7fba95e9eea0>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7fba95f57470>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_execute_request_2(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:91:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fba95edfba8>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 15:41:40.966] [__default__] [info] [pid 85 tid 85]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 15:41:40.966] [__default__] [info] [pid 85 tid 85] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-f190b501-50681b29cdf4d66d4ce5c5eb.json
rocketjoe_jupyter_1 | 2: [2020-06-25 15:41:40.966] [__default__] [info] [pid 85 tid 85] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 15:41:40.994] [__default__] [info] [pid 85 tid 85] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 15:41:40.994] [__default__] [info] [pid 85 tid 85] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 15:41:40.994] [__default__] [info] [pid 85 tid 85] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-f190b501-50681b29cdf4d66d4ce5c5eb.json
rocketjoe_jupyter_1 | 2: [2020-06-25 15:41:40.994] [__default__] [info] [pid 85 tid 85] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 15:41:41.881] [__default__] [info] [pid 85 tid 85] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=85)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002d0 by thread T1:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 std::__shared_ptr<spdlog::async_logger, (__gnu_cxx::_Lock_policy)2>::~__shared_ptr() /usr/include/c++/8/bits/shared_ptr_base.h:1167 (rocketjoed+0xe899ef)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002d0 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 main ../apps/rocketjoed/main.cpp:110 (rocketjoed+0xd120ac)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=87, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 void std::allocator_traits<std::allocator<spdlog::details::thread_pool> >::construct<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>&, spdlog::details::thread_pool*, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/alloc_traits.h:475 (rocketjoed+0x122fe7c)
rocketjoe_jupyter_1 | 2: #3 std::_Sp_counted_ptr_inplace<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, (__gnu_cxx::_Lock_policy)2>::_Sp_counted_ptr_inplace<unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:545 (rocketjoed+0x122eba5)
rocketjoe_jupyter_1 | 2: #4 std::__shared_count<(__gnu_cxx::_Lock_policy)2>::__shared_count<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(spdlog::details::thread_pool*&, std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:677 (rocketjoed+0x122dea2)
rocketjoe_jupyter_1 | 2: #5 std::__shared_ptr<spdlog::details::thread_pool, (__gnu_cxx::_Lock_policy)2>::__shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:1342 (rocketjoed+0x122d611)
rocketjoe_jupyter_1 | 2: #6 std::shared_ptr<spdlog::details::thread_pool>::shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:359 (rocketjoed+0x122ce59)
rocketjoe_jupyter_1 | 2: #7 std::shared_ptr<spdlog::details::thread_pool> std::allocate_shared<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool> const&, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:706 (rocketjoed+0x122c1fe)
rocketjoe_jupyter_1 | 2: #8 std::shared_ptr<spdlog::details::thread_pool> std::make_shared<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:722 (rocketjoed+0x122b3de)
rocketjoe_jupyter_1 | 2: #9 spdlog::init_thread_pool(unsigned long, unsigned long, std::function<void ()>) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:78 (rocketjoed+0x122af71)
rocketjoe_jupyter_1 | 2: #10 spdlog::init_thread_pool(unsigned long, unsigned long) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:85 (rocketjoed+0x122b0b3)
rocketjoe_jupyter_1 | 2: #11 components::initialization_logger() ../components/log/log.cpp:32 (rocketjoed+0x122a4ec)
rocketjoe_jupyter_1 | 2: #12 main ../apps/rocketjoed/main.cpp:71 (rocketjoed+0xd11600)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=85)
rocketjoe_jupyter_1 | 2: Read of size 1 at 0x7b0800001010 by main thread:
rocketjoe_jupyter_1 | 2: #0 strncpy <null> (libtsan.so.0+0x2b783)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0x81f63)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:27 (rocketjoed+0x11daacf)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:273 (rocketjoed+0xf5e8ce)
rocketjoe_jupyter_1 | 2: #4 main ../apps/rocketjoed/main.cpp:199 (rocketjoed+0xd130e6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0800001010 by thread T1 (mutexes: write M89):
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 __tzstring_len /build/glibc-vjB4T1/glibc-2.28/time/tzset.c:99 (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0xe51956)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Location is heap block of size 20 at 0x7b0800001000 allocated by thread T1:
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 __tzstring_len /build/glibc-vjB4T1/glibc-2.28/time/tzset.c:99 (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0xe51956)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M89 (0x555bcbc2d860) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0xcfb26f)
rocketjoe_jupyter_1 | 2: #2 std::mutex::lock() /usr/include/c++/8/bits/std_mutex.h:103 (rocketjoed+0xcfe203)
rocketjoe_jupyter_1 | 2: #3 std::lock_guard<std::mutex>::lock_guard(std::mutex&) /usr/include/c++/8/bits/std_mutex.h:162 (rocketjoed+0xd09fbd)
rocketjoe_jupyter_1 | 2: #4 spdlog::sinks::ansicolor_sink<spdlog::details::console_mutex>::set_formatter(std::unique_ptr<spdlog::formatter, std::default_delete<spdlog::formatter> >) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/sinks/ansicolor_sink-inl.h:84 (rocketjoed+0xe8a592)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:71 (rocketjoed+0xd11600)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=87, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 void std::allocator_traits<std::allocator<spdlog::details::thread_pool> >::construct<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>&, spdlog::details::thread_pool*, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/alloc_traits.h:475 (rocketjoed+0x122fe7c)
rocketjoe_jupyter_1 | 2: #3 std::_Sp_counted_ptr_inplace<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, (__gnu_cxx::_Lock_policy)2>::_Sp_counted_ptr_inplace<unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:545 (rocketjoed+0x122eba5)
rocketjoe_jupyter_1 | 2: #4 std::__shared_count<(__gnu_cxx::_Lock_policy)2>::__shared_count<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(spdlog::details::thread_pool*&, std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:677 (rocketjoed+0x122dea2)
rocketjoe_jupyter_1 | 2: #5 std::__shared_ptr<spdlog::details::thread_pool, (__gnu_cxx::_Lock_policy)2>::__shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:1342 (rocketjoed+0x122d611)
rocketjoe_jupyter_1 | 2: #6 std::shared_ptr<spdlog::details::thread_pool>::shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:359 (rocketjoed+0x122ce59)
rocketjoe_jupyter_1 | 2: #7 std::shared_ptr<spdlog::details::thread_pool> std::allocate_shared<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool> const&, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:706 (rocketjoed+0x122c1fe)
rocketjoe_jupyter_1 | 2: #8 std::shared_ptr<spdlog::details::thread_pool> std::make_shared<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:722 (rocketjoed+0x122b3de)
rocketjoe_jupyter_1 | 2: #9 spdlog::init_thread_pool(unsigned long, unsigned long, std::function<void ()>) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:78 (rocketjoed+0x122af71)
rocketjoe_jupyter_1 | 2: #10 spdlog::init_thread_pool(unsigned long, unsigned long) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:85 (rocketjoed+0x122b0b3)
rocketjoe_jupyter_1 | 2: #11 components::initialization_logger() ../components/log/log.cpp:32 (rocketjoed+0x122a4ec)
rocketjoe_jupyter_1 | 2: #12 main ../apps/rocketjoed/main.cpp:71 (rocketjoed+0xd11600)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2b783) in strncpy
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=85)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000810 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe2 <null> (libtsan.so.0+0x2f14e)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0xc4be1)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:34 (rocketjoed+0x11dabca)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:273 (rocketjoed+0xf5e8ce)
rocketjoe_jupyter_1 | 2: #4 main ../apps/rocketjoed/main.cpp:199 (rocketjoed+0xd130e6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000810 by thread T1:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 std::__shared_ptr<spdlog::async_logger, (__gnu_cxx::_Lock_policy)2>::~__shared_ptr() /usr/include/c++/8/bits/shared_ptr_base.h:1167 (rocketjoed+0xe899ef)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=87, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 void std::allocator_traits<std::allocator<spdlog::details::thread_pool> >::construct<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>&, spdlog::details::thread_pool*, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/alloc_traits.h:475 (rocketjoed+0x122fe7c)
rocketjoe_jupyter_1 | 2: #3 std::_Sp_counted_ptr_inplace<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, (__gnu_cxx::_Lock_policy)2>::_Sp_counted_ptr_inplace<unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:545 (rocketjoed+0x122eba5)
rocketjoe_jupyter_1 | 2: #4 std::__shared_count<(__gnu_cxx::_Lock_policy)2>::__shared_count<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(spdlog::details::thread_pool*&, std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:677 (rocketjoed+0x122dea2)
rocketjoe_jupyter_1 | 2: #5 std::__shared_ptr<spdlog::details::thread_pool, (__gnu_cxx::_Lock_policy)2>::__shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:1342 (rocketjoed+0x122d611)
rocketjoe_jupyter_1 | 2: #6 std::shared_ptr<spdlog::details::thread_pool>::shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:359 (rocketjoed+0x122ce59)
rocketjoe_jupyter_1 | 2: #7 std::shared_ptr<spdlog::details::thread_pool> std::allocate_shared<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool> const&, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:706 (rocketjoed+0x122c1fe)
rocketjoe_jupyter_1 | 2: #8 std::shared_ptr<spdlog::details::thread_pool> std::make_shared<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:722 (rocketjoed+0x122b3de)
rocketjoe_jupyter_1 | 2: #9 spdlog::init_thread_pool(unsigned long, unsigned long, std::function<void ()>) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:78 (rocketjoed+0x122af71)
rocketjoe_jupyter_1 | 2: #10 spdlog::init_thread_pool(unsigned long, unsigned long) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:85 (rocketjoed+0x122b0b3)
rocketjoe_jupyter_1 | 2: #11 components::initialization_logger() ../components/log/log.cpp:32 (rocketjoed+0x122a4ec)
rocketjoe_jupyter_1 | 2: #12 main ../apps/rocketjoed/main.cpp:71 (rocketjoed+0xd11600)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f14e) in __interceptor_pipe2
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 41755,
rocketjoe_jupyter_1 | 2: "hb_port": 47079,
rocketjoe_jupyter_1 | 2: "iopub_port": 39661,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "f09b34c2-ab9fe4b78247d3487779319d",
rocketjoe_jupyter_1 | 2: "shell_port": 56983,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 59969,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ______________________ test_rocketjoe_complete_request_1 _______________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fba95f54438>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7fba95e690f0>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7fba95e66158>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7fba95e5bdd8>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_complete_request_1(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:101:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fba95f54438>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 15:42:47.609] [__default__] [info] [pid 106 tid 106]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 15:42:47.609] [__default__] [info] [pid 106 tid 106] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-af314cbf-ecf28867ce09c9010d8abf94.json
rocketjoe_jupyter_1 | 2: [2020-06-25 15:42:47.610] [__default__] [info] [pid 106 tid 106] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 15:42:47.636] [__default__] [info] [pid 106 tid 106] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 15:42:47.637] [__default__] [info] [pid 106 tid 106] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 15:42:47.637] [__default__] [info] [pid 106 tid 106] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-af314cbf-ecf28867ce09c9010d8abf94.json
rocketjoe_jupyter_1 | 2: [2020-06-25 15:42:47.637] [__default__] [info] [pid 106 tid 106] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 15:42:48.504] [__default__] [info] [pid 106 tid 106] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=106)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b04000002b0 by thread T1:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 std::__shared_ptr<spdlog::async_logger, (__gnu_cxx::_Lock_policy)2>::~__shared_ptr() /usr/include/c++/8/bits/shared_ptr_base.h:1167 (rocketjoed+0xe899ef)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b04000002b0 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 bool boost::typeindex::operator==<boost::typeindex::stl_type_index, std::type_info>(boost::typeindex::type_index_facade<boost::typeindex::stl_type_index, std::type_info> const&, boost::typeindex::type_index_facade<boost::typeindex::stl_type_index, std::type_info> const&) <null> (rocketjoed+0xd50200)
rocketjoe_jupyter_1 | 2: #3 bool boost::typeindex::operator==<boost::typeindex::stl_type_index, std::type_info>(std::type_info const&, boost::typeindex::type_index_facade<boost::typeindex::stl_type_index, std::type_info> const&) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/type_index/type_index_facade.hpp:188 (rocketjoed+0xd48607)
rocketjoe_jupyter_1 | 2: #4 unsigned short const* boost::any_cast<unsigned short const>(boost::any*) /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/any.hpp:251 (rocketjoed+0xd3fafe)
rocketjoe_jupyter_1 | 2: #5 unsigned short const& boost::any_cast<unsigned short const&>(boost::any&) <null> (rocketjoed+0xd374f0)
rocketjoe_jupyter_1 | 2: #6 unsigned short const& boost::any_cast<unsigned short const&>(boost::any const&) <null> (rocketjoed+0xd2d458)
rocketjoe_jupyter_1 | 2: #7 unsigned short const& boost::program_options::variable_value::as<unsigned short>() const <null> (rocketjoed+0xd259d4)
rocketjoe_jupyter_1 | 2: #8 main ../apps/rocketjoed/main.cpp:110 (rocketjoed+0xd120d9)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=108, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 void std::allocator_traits<std::allocator<spdlog::details::thread_pool> >::construct<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>&, spdlog::details::thread_pool*, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/alloc_traits.h:475 (rocketjoed+0x122fe7c)
rocketjoe_jupyter_1 | 2: #3 std::_Sp_counted_ptr_inplace<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, (__gnu_cxx::_Lock_policy)2>::_Sp_counted_ptr_inplace<unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:545 (rocketjoed+0x122eba5)
rocketjoe_jupyter_1 | 2: #4 std::__shared_count<(__gnu_cxx::_Lock_policy)2>::__shared_count<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(spdlog::details::thread_pool*&, std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:677 (rocketjoed+0x122dea2)
rocketjoe_jupyter_1 | 2: #5 std::__shared_ptr<spdlog::details::thread_pool, (__gnu_cxx::_Lock_policy)2>::__shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:1342 (rocketjoed+0x122d611)
rocketjoe_jupyter_1 | 2: #6 std::shared_ptr<spdlog::details::thread_pool>::shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:359 (rocketjoed+0x122ce59)
rocketjoe_jupyter_1 | 2: #7 std::shared_ptr<spdlog::details::thread_pool> std::allocate_shared<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool> const&, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:706 (rocketjoed+0x122c1fe)
rocketjoe_jupyter_1 | 2: #8 std::shared_ptr<spdlog::details::thread_pool> std::make_shared<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:722 (rocketjoed+0x122b3de)
rocketjoe_jupyter_1 | 2: #9 spdlog::init_thread_pool(unsigned long, unsigned long, std::function<void ()>) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:78 (rocketjoed+0x122af71)
rocketjoe_jupyter_1 | 2: #10 spdlog::init_thread_pool(unsigned long, unsigned long) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:85 (rocketjoed+0x122b0b3)
rocketjoe_jupyter_1 | 2: #11 components::initialization_logger() ../components/log/log.cpp:32 (rocketjoed+0x122a4ec)
rocketjoe_jupyter_1 | 2: #12 main ../apps/rocketjoed/main.cpp:71 (rocketjoed+0xd11600)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=106)
rocketjoe_jupyter_1 | 2: Read of size 1 at 0x7b0800001010 by main thread:
rocketjoe_jupyter_1 | 2: #0 strncpy <null> (libtsan.so.0+0x2b783)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0x81f63)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:27 (rocketjoed+0x11daacf)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:273 (rocketjoed+0xf5e8ce)
rocketjoe_jupyter_1 | 2: #4 main ../apps/rocketjoed/main.cpp:199 (rocketjoed+0xd130e6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0800001010 by thread T1 (mutexes: write M89):
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 __tzstring_len /build/glibc-vjB4T1/glibc-2.28/time/tzset.c:99 (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0xe51956)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Location is heap block of size 20 at 0x7b0800001000 allocated by thread T1:
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 __tzstring_len /build/glibc-vjB4T1/glibc-2.28/time/tzset.c:99 (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0xe51956)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M89 (0x561924bc3860) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0xcfb26f)
rocketjoe_jupyter_1 | 2: #2 std::mutex::lock() /usr/include/c++/8/bits/std_mutex.h:103 (rocketjoed+0xcfe203)
rocketjoe_jupyter_1 | 2: #3 std::lock_guard<std::mutex>::lock_guard(std::mutex&) /usr/include/c++/8/bits/std_mutex.h:162 (rocketjoed+0xd09fbd)
rocketjoe_jupyter_1 | 2: #4 spdlog::sinks::ansicolor_sink<spdlog::details::console_mutex>::set_formatter(std::unique_ptr<spdlog::formatter, std::default_delete<spdlog::formatter> >) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/sinks/ansicolor_sink-inl.h:84 (rocketjoed+0xe8a592)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:71 (rocketjoed+0xd11600)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=108, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 void std::allocator_traits<std::allocator<spdlog::details::thread_pool> >::construct<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>&, spdlog::details::thread_pool*, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/alloc_traits.h:475 (rocketjoed+0x122fe7c)
rocketjoe_jupyter_1 | 2: #3 std::_Sp_counted_ptr_inplace<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, (__gnu_cxx::_Lock_policy)2>::_Sp_counted_ptr_inplace<unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:545 (rocketjoed+0x122eba5)
rocketjoe_jupyter_1 | 2: #4 std::__shared_count<(__gnu_cxx::_Lock_policy)2>::__shared_count<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(spdlog::details::thread_pool*&, std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:677 (rocketjoed+0x122dea2)
rocketjoe_jupyter_1 | 2: #5 std::__shared_ptr<spdlog::details::thread_pool, (__gnu_cxx::_Lock_policy)2>::__shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:1342 (rocketjoed+0x122d611)
rocketjoe_jupyter_1 | 2: #6 std::shared_ptr<spdlog::details::thread_pool>::shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:359 (rocketjoed+0x122ce59)
rocketjoe_jupyter_1 | 2: #7 std::shared_ptr<spdlog::details::thread_pool> std::allocate_shared<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool> const&, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:706 (rocketjoed+0x122c1fe)
rocketjoe_jupyter_1 | 2: #8 std::shared_ptr<spdlog::details::thread_pool> std::make_shared<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:722 (rocketjoed+0x122b3de)
rocketjoe_jupyter_1 | 2: #9 spdlog::init_thread_pool(unsigned long, unsigned long, std::function<void ()>) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:78 (rocketjoed+0x122af71)
rocketjoe_jupyter_1 | 2: #10 spdlog::init_thread_pool(unsigned long, unsigned long) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:85 (rocketjoed+0x122b0b3)
rocketjoe_jupyter_1 | 2: #11 components::initialization_logger() ../components/log/log.cpp:32 (rocketjoed+0x122a4ec)
rocketjoe_jupyter_1 | 2: #12 main ../apps/rocketjoed/main.cpp:71 (rocketjoed+0xd11600)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2b783) in strncpy
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=106)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000810 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe2 <null> (libtsan.so.0+0x2f14e)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0xc4be1)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:34 (rocketjoed+0x11dabca)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:273 (rocketjoed+0xf5e8ce)
rocketjoe_jupyter_1 | 2: #4 main ../apps/rocketjoed/main.cpp:199 (rocketjoed+0xd130e6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000810 by thread T1:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 std::__shared_ptr<spdlog::async_logger, (__gnu_cxx::_Lock_policy)2>::~__shared_ptr() /usr/include/c++/8/bits/shared_ptr_base.h:1167 (rocketjoed+0xe899ef)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=108, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 void std::allocator_traits<std::allocator<spdlog::details::thread_pool> >::construct<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>&, spdlog::details::thread_pool*, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/alloc_traits.h:475 (rocketjoed+0x122fe7c)
rocketjoe_jupyter_1 | 2: #3 std::_Sp_counted_ptr_inplace<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, (__gnu_cxx::_Lock_policy)2>::_Sp_counted_ptr_inplace<unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:545 (rocketjoed+0x122eba5)
rocketjoe_jupyter_1 | 2: #4 std::__shared_count<(__gnu_cxx::_Lock_policy)2>::__shared_count<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(spdlog::details::thread_pool*&, std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:677 (rocketjoed+0x122dea2)
rocketjoe_jupyter_1 | 2: #5 std::__shared_ptr<spdlog::details::thread_pool, (__gnu_cxx::_Lock_policy)2>::__shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:1342 (rocketjoed+0x122d611)
rocketjoe_jupyter_1 | 2: #6 std::shared_ptr<spdlog::details::thread_pool>::shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:359 (rocketjoed+0x122ce59)
rocketjoe_jupyter_1 | 2: #7 std::shared_ptr<spdlog::details::thread_pool> std::allocate_shared<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool> const&, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:706 (rocketjoed+0x122c1fe)
rocketjoe_jupyter_1 | 2: #8 std::shared_ptr<spdlog::details::thread_pool> std::make_shared<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:722 (rocketjoed+0x122b3de)
rocketjoe_jupyter_1 | 2: #9 spdlog::init_thread_pool(unsigned long, unsigned long, std::function<void ()>) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:78 (rocketjoed+0x122af71)
rocketjoe_jupyter_1 | 2: #10 spdlog::init_thread_pool(unsigned long, unsigned long) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:85 (rocketjoed+0x122b0b3)
rocketjoe_jupyter_1 | 2: #11 components::initialization_logger() ../components/log/log.cpp:32 (rocketjoed+0x122a4ec)
rocketjoe_jupyter_1 | 2: #12 main ../apps/rocketjoed/main.cpp:71 (rocketjoed+0xd11600)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f14e) in __interceptor_pipe2
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 48671,
rocketjoe_jupyter_1 | 2: "hb_port": 45875,
rocketjoe_jupyter_1 | 2: "iopub_port": 42699,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "d22493db-258247f34a8846b07927ce3d",
rocketjoe_jupyter_1 | 2: "shell_port": 47437,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 59771,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=106)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400001000 by main thread (mutexes: write M905):
rocketjoe_jupyter_1 | 2: #0 open64 <null> (libtsan.so.0+0x2de81)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libsqlite3.so.0+0x47e6d)
rocketjoe_jupyter_1 | 2: #2 pybind11::object pybind11::detail::object_api<pybind11::detail::accessor<pybind11::detail::accessor_policies::str_attr> >::operator()<(pybind11::return_value_policy)1, pybind11::arg_v>(pybind11::arg_v&&) const /root/.conan/data/pybind11/2.3.0/conan/stable/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/pybind11/cast.h:2108 (rocketjoed+0x1088a7a)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::detail::jupyter::interpreter_impl::interpreter_impl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool, boost::uuids::uuid) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:515 (rocketjoed+0x104b4df)
rocketjoe_jupyter_1 | 2: #4 std::_MakeUniq<rocketjoe::services::detail::jupyter::interpreter_impl>::__single_object std::make_unique<rocketjoe::services::detail::jupyter::interpreter_impl, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool&, boost::uuids::uuid>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, zmq::socket_t&&, zmq::socket_t&&, boost::optional<zmq::socket_t>&&, zmq::socket_t&&, boost::optional<zmq::socket_t>&&, boost::optional<zmq::socket_t>&&, bool&, boost::uuids::uuid&&) <null> (rocketjoed+0x109494f)
rocketjoe_jupyter_1 | 2: #5 rocketjoe::services::detail::jupyter::pykernel::pykernel(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool, boost::uuids::uuid) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:1659 (rocketjoed+0x106c029)
rocketjoe_jupyter_1 | 2: #6 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:137 (rocketjoed+0xf5ae62)
rocketjoe_jupyter_1 | 2: #7 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:280 (rocketjoed+0xf5ed78)
rocketjoe_jupyter_1 | 2: #8 main ../apps/rocketjoed/main.cpp:199 (rocketjoed+0xd130e6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400001000 by thread T4:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 std::ostreambuf_iterator<char, std::char_traits<char> > boost::locale::util::base_num_format<char>::do_real_put<long>(std::ostreambuf_iterator<char, std::char_traits<char> >, std::ios_base&, char, long) const libs/locale/src/std/../util/numeric.hpp:125 (rocketjoed+0xee5844)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M905 (0x7b0c00001748) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_init <null> (libtsan.so.0+0x2c5ad)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libsqlite3.so.0+0x29379)
rocketjoe_jupyter_1 | 2: #2 pybind11::object pybind11::detail::object_api<pybind11::detail::accessor<pybind11::detail::accessor_policies::str_attr> >::operator()<(pybind11::return_value_policy)1, pybind11::arg_v>(pybind11::arg_v&&) const /root/.conan/data/pybind11/2.3.0/conan/stable/package/5ab84d6acfe1f23c4fae0ab88f26e3a396351ac9/include/pybind11/cast.h:2108 (rocketjoed+0x1088a7a)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::detail::jupyter::interpreter_impl::interpreter_impl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool, boost::uuids::uuid) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:515 (rocketjoed+0x104b4df)
rocketjoe_jupyter_1 | 2: #4 std::_MakeUniq<rocketjoe::services::detail::jupyter::interpreter_impl>::__single_object std::make_unique<rocketjoe::services::detail::jupyter::interpreter_impl, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool&, boost::uuids::uuid>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, zmq::socket_t&&, zmq::socket_t&&, boost::optional<zmq::socket_t>&&, zmq::socket_t&&, boost::optional<zmq::socket_t>&&, boost::optional<zmq::socket_t>&&, bool&, boost::uuids::uuid&&) <null> (rocketjoed+0x109494f)
rocketjoe_jupyter_1 | 2: #5 rocketjoe::services::detail::jupyter::pykernel::pykernel(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool, boost::uuids::uuid) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:1659 (rocketjoed+0x106c029)
rocketjoe_jupyter_1 | 2: #6 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:137 (rocketjoed+0xf5ae62)
rocketjoe_jupyter_1 | 2: #7 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:280 (rocketjoed+0xf5ed78)
rocketjoe_jupyter_1 | 2: #8 main ../apps/rocketjoed/main.cpp:199 (rocketjoed+0xd130e6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T4 'ZMQbg/IO/0' (tid=113, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 zmq::thread_t::start(void (*)(void*), void*, char const*) /home/conan/.conan/data/zmq/4.3.2/bincrafters/stable/build/9d43b0a6dcf99be58f9186c18969d7b3c0292752/sources_subfolder/src/thread.cpp:236 (rocketjoed+0x12712e9)
rocketjoe_jupyter_1 | 2: #2 zmq::socket_t::socket_t(zmq::context_t&, zmq::socket_type) <null> (rocketjoed+0xf861ef)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:105 (rocketjoed+0xf5a2af)
rocketjoe_jupyter_1 | 2: #4 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:280 (rocketjoed+0xf5ed78)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:199 (rocketjoed+0xd130e6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2de81) in __interceptor_open64
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ______________________ test_rocketjoe_complete_request_2 _______________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fba95eb3c18>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7fba95e690f0>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7fba95473268>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7fba95f9bba8>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_complete_request_2(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:111:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeout=startup_timeout)
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fba95eb3c18>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2: except ioloop.TimeoutError:
rocketjoe_jupyter_1 | 2: raise TimeoutError("Kernel client wasn't ready in {} seconds"
rocketjoe_jupyter_1 | 2: > .format(timeout))
rocketjoe_jupyter_1 | 2: E TimeoutError: Kernel client wasn't ready in 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:410: TimeoutError
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stdout call -----------------------------
rocketjoe_jupyter_1 | 2: [2020-06-25 15:43:54.016] [__default__] [info] [pid 127 tid 127]
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2: ______ _ _ ___
rocketjoe_jupyter_1 | 2: | ___ \ | | | | |_ |
rocketjoe_jupyter_1 | 2: | |_/ /___ ___| | _____| |_ | | ___ ___
rocketjoe_jupyter_1 | 2: | // _ \ / __| |/ / _ \ __| | |/ _ \ / _ \
rocketjoe_jupyter_1 | 2: | |\ \ (_) | (__| < __/ |_/\__/ / (_) | __/
rocketjoe_jupyter_1 | 2: \_| \_\___/ \___|_|\_\___|\__\____/ \___/ \___|
rocketjoe_jupyter_1 | 2: -------------------------------------------------
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: [2020-06-25 15:43:54.017] [__default__] [info] [pid 127 tid 127] Command Args : /app/build/bin/rocketjoed , --jupyter_kernel , --jupyter_connection , /root/.local/share/jupyter/runtime/kernel-9913c20a-328f3bdf3cf583251d576392.json
rocketjoe_jupyter_1 | 2: [2020-06-25 15:43:54.017] [__default__] [info] [pid 127 tid 127] jupyter kernel mode
rocketjoe_jupyter_1 | 2: [2020-06-25 15:43:54.045] [__default__] [info] [pid 127 tid 127] processing env python start
rocketjoe_jupyter_1 | 2: [2020-06-25 15:43:54.045] [__default__] [info] [pid 127 tid 127] Mode : 2
rocketjoe_jupyter_1 | 2: [2020-06-25 15:43:54.045] [__default__] [info] [pid 127 tid 127] jupyter connection path : /root/.local/share/jupyter/runtime/kernel-9913c20a-328f3bdf3cf583251d576392.json
rocketjoe_jupyter_1 | 2: [2020-06-25 15:43:54.045] [__default__] [info] [pid 127 tid 127] processing env python finish
rocketjoe_jupyter_1 | 2: [2020-06-25 15:43:54.896] [__default__] [info] [pid 127 tid 127] jupyter kernel mode
rocketjoe_jupyter_1 | 2: ----------------------------- Captured stderr call -----------------------------
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=127)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000050 by thread T1:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 std::__shared_ptr<spdlog::async_logger, (__gnu_cxx::_Lock_policy)2>::~__shared_ptr() /usr/include/c++/8/bits/shared_ptr_base.h:1167 (rocketjoed+0xe899ef)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000050 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 boost::filesystem::path const& boost::any_cast<boost::filesystem::path const&>(boost::any&) <null> (rocketjoed+0xd38315)
rocketjoe_jupyter_1 | 2: #3 boost::filesystem::path const& boost::any_cast<boost::filesystem::path const&>(boost::any const&) <null> (rocketjoed+0xd2e1bb)
rocketjoe_jupyter_1 | 2: #4 boost::filesystem::path const& boost::program_options::variable_value::as<boost::filesystem::path>() const <null> (rocketjoed+0xd26acc)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:181 (rocketjoed+0xd12e7d)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=129, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 void std::allocator_traits<std::allocator<spdlog::details::thread_pool> >::construct<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>&, spdlog::details::thread_pool*, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/alloc_traits.h:475 (rocketjoed+0x122fe7c)
rocketjoe_jupyter_1 | 2: #3 std::_Sp_counted_ptr_inplace<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, (__gnu_cxx::_Lock_policy)2>::_Sp_counted_ptr_inplace<unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:545 (rocketjoed+0x122eba5)
rocketjoe_jupyter_1 | 2: #4 std::__shared_count<(__gnu_cxx::_Lock_policy)2>::__shared_count<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(spdlog::details::thread_pool*&, std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:677 (rocketjoed+0x122dea2)
rocketjoe_jupyter_1 | 2: #5 std::__shared_ptr<spdlog::details::thread_pool, (__gnu_cxx::_Lock_policy)2>::__shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:1342 (rocketjoed+0x122d611)
rocketjoe_jupyter_1 | 2: #6 std::shared_ptr<spdlog::details::thread_pool>::shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:359 (rocketjoed+0x122ce59)
rocketjoe_jupyter_1 | 2: #7 std::shared_ptr<spdlog::details::thread_pool> std::allocate_shared<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool> const&, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:706 (rocketjoed+0x122c1fe)
rocketjoe_jupyter_1 | 2: #8 std::shared_ptr<spdlog::details::thread_pool> std::make_shared<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:722 (rocketjoed+0x122b3de)
rocketjoe_jupyter_1 | 2: #9 spdlog::init_thread_pool(unsigned long, unsigned long, std::function<void ()>) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:78 (rocketjoed+0x122af71)
rocketjoe_jupyter_1 | 2: #10 spdlog::init_thread_pool(unsigned long, unsigned long) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:85 (rocketjoed+0x122b0b3)
rocketjoe_jupyter_1 | 2: #11 components::initialization_logger() ../components/log/log.cpp:32 (rocketjoed+0x122a4ec)
rocketjoe_jupyter_1 | 2: #12 main ../apps/rocketjoed/main.cpp:71 (rocketjoed+0xd11600)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=127)
rocketjoe_jupyter_1 | 2: Read of size 1 at 0x7b0800001010 by main thread:
rocketjoe_jupyter_1 | 2: #0 strncpy <null> (libtsan.so.0+0x2b783)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0x81f63)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:27 (rocketjoed+0x11daacf)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:273 (rocketjoed+0xf5e8ce)
rocketjoe_jupyter_1 | 2: #4 main ../apps/rocketjoed/main.cpp:199 (rocketjoed+0xd130e6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0800001010 by thread T1 (mutexes: write M89):
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 __tzstring_len /build/glibc-vjB4T1/glibc-2.28/time/tzset.c:99 (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0xe51956)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Location is heap block of size 20 at 0x7b0800001000 allocated by thread T1:
rocketjoe_jupyter_1 | 2: #0 malloc <null> (libtsan.so.0+0x2b1a3)
rocketjoe_jupyter_1 | 2: #1 __tzstring_len /build/glibc-vjB4T1/glibc-2.28/time/tzset.c:99 (libc.so.6+0xb620e)
rocketjoe_jupyter_1 | 2: #2 spdlog::details::os::localtime(long const&) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/details/os-inl.h:99 (rocketjoed+0xe51956)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Mutex M89 (0x55560fa9c860) created at:
rocketjoe_jupyter_1 | 2: #0 pthread_mutex_lock <null> (libtsan.so.0+0x3d62b)
rocketjoe_jupyter_1 | 2: #1 __gthread_mutex_lock /usr/include/x86_64-linux-gnu/c++/8/bits/gthr-default.h:748 (rocketjoed+0xcfb26f)
rocketjoe_jupyter_1 | 2: #2 std::mutex::lock() /usr/include/c++/8/bits/std_mutex.h:103 (rocketjoed+0xcfe203)
rocketjoe_jupyter_1 | 2: #3 std::lock_guard<std::mutex>::lock_guard(std::mutex&) /usr/include/c++/8/bits/std_mutex.h:162 (rocketjoed+0xd09fbd)
rocketjoe_jupyter_1 | 2: #4 spdlog::sinks::ansicolor_sink<spdlog::details::console_mutex>::set_formatter(std::unique_ptr<spdlog::formatter, std::default_delete<spdlog::formatter> >) /tmp/c3ipr/pr_1651_2_4_33/.conan/data/spdlog/1.5.0/_/_/build/793be5fbe1f922af87730a97e0369a0659eb4032/source_subfolder/include/spdlog/sinks/ansicolor_sink-inl.h:84 (rocketjoed+0xe8a592)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:71 (rocketjoed+0xd11600)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=129, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 void std::allocator_traits<std::allocator<spdlog::details::thread_pool> >::construct<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>&, spdlog::details::thread_pool*, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/alloc_traits.h:475 (rocketjoed+0x122fe7c)
rocketjoe_jupyter_1 | 2: #3 std::_Sp_counted_ptr_inplace<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, (__gnu_cxx::_Lock_policy)2>::_Sp_counted_ptr_inplace<unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:545 (rocketjoed+0x122eba5)
rocketjoe_jupyter_1 | 2: #4 std::__shared_count<(__gnu_cxx::_Lock_policy)2>::__shared_count<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(spdlog::details::thread_pool*&, std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:677 (rocketjoed+0x122dea2)
rocketjoe_jupyter_1 | 2: #5 std::__shared_ptr<spdlog::details::thread_pool, (__gnu_cxx::_Lock_policy)2>::__shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:1342 (rocketjoed+0x122d611)
rocketjoe_jupyter_1 | 2: #6 std::shared_ptr<spdlog::details::thread_pool>::shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:359 (rocketjoed+0x122ce59)
rocketjoe_jupyter_1 | 2: #7 std::shared_ptr<spdlog::details::thread_pool> std::allocate_shared<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool> const&, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:706 (rocketjoed+0x122c1fe)
rocketjoe_jupyter_1 | 2: #8 std::shared_ptr<spdlog::details::thread_pool> std::make_shared<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:722 (rocketjoed+0x122b3de)
rocketjoe_jupyter_1 | 2: #9 spdlog::init_thread_pool(unsigned long, unsigned long, std::function<void ()>) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:78 (rocketjoed+0x122af71)
rocketjoe_jupyter_1 | 2: #10 spdlog::init_thread_pool(unsigned long, unsigned long) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:85 (rocketjoed+0x122b0b3)
rocketjoe_jupyter_1 | 2: #11 components::initialization_logger() ../components/log/log.cpp:32 (rocketjoed+0x122a4ec)
rocketjoe_jupyter_1 | 2: #12 main ../apps/rocketjoed/main.cpp:71 (rocketjoed+0xd11600)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2b783) in strncpy
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=127)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400000810 by main thread:
rocketjoe_jupyter_1 | 2: #0 open64 <null> (libtsan.so.0+0x2de81)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libpython3.7m.so.1.0+0xdf106)
rocketjoe_jupyter_1 | 2: #2 rocketjoe::services::python_sandbox::detail::add_jupyter(pybind11::module&, rocketjoe::services::python_sandbox::detail::context_manager*) ../components/python_sandbox/source/detail/jupyter.cpp:34 (rocketjoed+0x11dabca)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:273 (rocketjoed+0xf5e8ce)
rocketjoe_jupyter_1 | 2: #4 main ../apps/rocketjoed/main.cpp:199 (rocketjoed+0xd130e6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400000810 by thread T1:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 std::__shared_ptr<spdlog::async_logger, (__gnu_cxx::_Lock_policy)2>::~__shared_ptr() /usr/include/c++/8/bits/shared_ptr_base.h:1167 (rocketjoed+0xe899ef)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T1 (tid=129, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 std::thread::_M_start_thread(std::unique_ptr<std::thread::_State, std::default_delete<std::thread::_State> >, void (*)()) <null> (libstdc++.so.6+0xbbdb4)
rocketjoe_jupyter_1 | 2: #2 void std::allocator_traits<std::allocator<spdlog::details::thread_pool> >::construct<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>&, spdlog::details::thread_pool*, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/alloc_traits.h:475 (rocketjoed+0x122fe7c)
rocketjoe_jupyter_1 | 2: #3 std::_Sp_counted_ptr_inplace<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, (__gnu_cxx::_Lock_policy)2>::_Sp_counted_ptr_inplace<unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:545 (rocketjoed+0x122eba5)
rocketjoe_jupyter_1 | 2: #4 std::__shared_count<(__gnu_cxx::_Lock_policy)2>::__shared_count<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(spdlog::details::thread_pool*&, std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:677 (rocketjoed+0x122dea2)
rocketjoe_jupyter_1 | 2: #5 std::__shared_ptr<spdlog::details::thread_pool, (__gnu_cxx::_Lock_policy)2>::__shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr_base.h:1342 (rocketjoed+0x122d611)
rocketjoe_jupyter_1 | 2: #6 std::shared_ptr<spdlog::details::thread_pool>::shared_ptr<std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::_Sp_alloc_shared_tag<std::allocator<spdlog::details::thread_pool> >, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:359 (rocketjoed+0x122ce59)
rocketjoe_jupyter_1 | 2: #7 std::shared_ptr<spdlog::details::thread_pool> std::allocate_shared<spdlog::details::thread_pool, std::allocator<spdlog::details::thread_pool>, unsigned long&, unsigned long&, std::function<void ()>&>(std::allocator<spdlog::details::thread_pool> const&, unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:706 (rocketjoed+0x122c1fe)
rocketjoe_jupyter_1 | 2: #8 std::shared_ptr<spdlog::details::thread_pool> std::make_shared<spdlog::details::thread_pool, unsigned long&, unsigned long&, std::function<void ()>&>(unsigned long&, unsigned long&, std::function<void ()>&) /usr/include/c++/8/bits/shared_ptr.h:722 (rocketjoed+0x122b3de)
rocketjoe_jupyter_1 | 2: #9 spdlog::init_thread_pool(unsigned long, unsigned long, std::function<void ()>) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:78 (rocketjoed+0x122af71)
rocketjoe_jupyter_1 | 2: #10 spdlog::init_thread_pool(unsigned long, unsigned long) /root/.conan/data/spdlog/1.5.0/_/_/package/793be5fbe1f922af87730a97e0369a0659eb4032/include/spdlog/async.h:85 (rocketjoed+0x122b0b3)
rocketjoe_jupyter_1 | 2: #11 components::initialization_logger() ../components/log/log.cpp:32 (rocketjoed+0x122a4ec)
rocketjoe_jupyter_1 | 2: #12 main ../apps/rocketjoed/main.cpp:71 (rocketjoed+0xd11600)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2de81) in __interceptor_open64
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: {
rocketjoe_jupyter_1 | 2: "control_port": 39881,
rocketjoe_jupyter_1 | 2: "hb_port": 44365,
rocketjoe_jupyter_1 | 2: "iopub_port": 38583,
rocketjoe_jupyter_1 | 2: "ip": "127.0.0.1",
rocketjoe_jupyter_1 | 2: "key": "f606c9ba-e3b121289d40e1508fa9ae96",
rocketjoe_jupyter_1 | 2: "shell_port": 38861,
rocketjoe_jupyter_1 | 2: "signature_scheme": "hmac-sha256",
rocketjoe_jupyter_1 | 2: "stdin_port": 36525,
rocketjoe_jupyter_1 | 2: "transport": "tcp"
rocketjoe_jupyter_1 | 2: }
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: WARNING: ThreadSanitizer: data race (pid=127)
rocketjoe_jupyter_1 | 2: Write of size 8 at 0x7b0400001800 by main thread:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 boost::locale::basic_format<char>::write(std::ostream&) const /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/locale/format.hpp:270 (rocketjoed+0x10a06c2)
rocketjoe_jupyter_1 | 2: #3 boost::locale::basic_format<char>::str[abi:cxx11](std::locale const&) const /root/.conan/data/boost/1.71.0/conan/stable/package/ec6d2f0b8a7d83d86e12e4a9ff9ee8b2d4fa6099/include/boost/locale/format.hpp:255 (rocketjoed+0x108b3e3)
rocketjoe_jupyter_1 | 2: #4 rocketjoe::services::detail::jupyter::session::construct_message(std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > >) ../components/python_sandbox/source/detail/jupyter/session.cpp:454 (rocketjoed+0x113d928)
rocketjoe_jupyter_1 | 2: #5 rocketjoe::services::detail::jupyter::interpreter_impl::publish_status(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long, unsigned long, double, std::allocator, nlohmann::adl_serializer>) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:758 (rocketjoed+0x1051ce7)
rocketjoe_jupyter_1 | 2: #6 rocketjoe::services::detail::jupyter::interpreter_impl::interpreter_impl(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool, boost::uuids::uuid) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:576 (rocketjoed+0x104d67f)
rocketjoe_jupyter_1 | 2: #7 std::_MakeUniq<rocketjoe::services::detail::jupyter::interpreter_impl>::__single_object std::make_unique<rocketjoe::services::detail::jupyter::interpreter_impl, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool&, boost::uuids::uuid>(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&&, zmq::socket_t&&, zmq::socket_t&&, boost::optional<zmq::socket_t>&&, zmq::socket_t&&, boost::optional<zmq::socket_t>&&, boost::optional<zmq::socket_t>&&, bool&, boost::uuids::uuid&&) <null> (rocketjoed+0x109494f)
rocketjoe_jupyter_1 | 2: #8 rocketjoe::services::detail::jupyter::pykernel::pykernel(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, zmq::socket_t, zmq::socket_t, boost::optional<zmq::socket_t>, zmq::socket_t, boost::optional<zmq::socket_t>, boost::optional<zmq::socket_t>, bool, boost::uuids::uuid) ../components/python_sandbox/source/detail/jupyter/pykernel.cpp:1659 (rocketjoed+0x106c029)
rocketjoe_jupyter_1 | 2: #9 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:137 (rocketjoed+0xf5ae62)
rocketjoe_jupyter_1 | 2: #10 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:280 (rocketjoed+0xf5ed78)
rocketjoe_jupyter_1 | 2: #11 main ../apps/rocketjoed/main.cpp:199 (rocketjoed+0xd130e6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Previous write of size 8 at 0x7b0400001800 by thread T4:
rocketjoe_jupyter_1 | 2: #0 pipe <null> (libtsan.so.0+0x2f069)
rocketjoe_jupyter_1 | 2: #1 <null> <null> (libubsan.so.1+0x1b24d)
rocketjoe_jupyter_1 | 2: #2 std::ostreambuf_iterator<char, std::char_traits<char> > boost::locale::util::base_num_format<char>::do_real_put<long>(std::ostreambuf_iterator<char, std::char_traits<char> >, std::ios_base&, char, long) const libs/locale/src/std/../util/numeric.hpp:125 (rocketjoed+0xee5844)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: Thread T4 'ZMQbg/IO/0' (tid=134, running) created by main thread at:
rocketjoe_jupyter_1 | 2: #0 pthread_create <null> (libtsan.so.0+0x2be1b)
rocketjoe_jupyter_1 | 2: #1 zmq::thread_t::start(void (*)(void*), void*, char const*) /home/conan/.conan/data/zmq/4.3.2/bincrafters/stable/build/9d43b0a6dcf99be58f9186c18969d7b3c0292752/sources_subfolder/src/thread.cpp:236 (rocketjoed+0x12712e9)
rocketjoe_jupyter_1 | 2: #2 zmq::socket_t::socket_t(zmq::context_t&, zmq::socket_type) <null> (rocketjoed+0xf861ef)
rocketjoe_jupyter_1 | 2: #3 rocketjoe::services::python_sandbox_t::jupyter_kernel_init() ../components/python_sandbox/source/python_sandbox.cpp:105 (rocketjoed+0xf5a2af)
rocketjoe_jupyter_1 | 2: #4 rocketjoe::services::python_sandbox_t::init() ../components/python_sandbox/source/python_sandbox.cpp:280 (rocketjoed+0xf5ed78)
rocketjoe_jupyter_1 | 2: #5 main ../apps/rocketjoed/main.cpp:199 (rocketjoed+0xd130e6)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: SUMMARY: ThreadSanitizer: data race (/usr/lib/x86_64-linux-gnu/libtsan.so.0+0x2f069) in __interceptor_pipe
rocketjoe_jupyter_1 | 2: ==================
rocketjoe_jupyter_1 | 2: _____________________ test_rocketjoe_is_complete_request_1 _____________________
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <jupyter_kernel_mgmt.client.BlockingKernelClient object at 0x7fba95e42550>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def wait_for_ready(self, timeout=None):
rocketjoe_jupyter_1 | 2: loop = self.loop_client.ioloop
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: > loop.run_sync(lambda: self.loop_client.wait_for_ready(), timeout=timeout)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/client.py:407:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self = <tornado.platform.asyncio.AsyncIOMainLoop object at 0x7fba95e690f0>
rocketjoe_jupyter_1 | 2: func = <function BlockingKernelClient.wait_for_ready.<locals>.<lambda> at 0x7fba9545da60>
rocketjoe_jupyter_1 | 2: timeout = 60
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run_sync(self, func: Callable, timeout: float = None) -> Any:
rocketjoe_jupyter_1 | 2: """Starts the `IOLoop`, runs the given function, and stops the loop.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The function must return either an awaitable object or
rocketjoe_jupyter_1 | 2: ``None``. If the function returns an awaitable object, the
rocketjoe_jupyter_1 | 2: `IOLoop` will run until the awaitable is resolved (and
rocketjoe_jupyter_1 | 2: `run_sync()` will return the awaitable's result). If it raises
rocketjoe_jupyter_1 | 2: an exception, the `IOLoop` will stop and the exception will be
rocketjoe_jupyter_1 | 2: re-raised to the caller.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: The keyword-only argument ``timeout`` may be used to set
rocketjoe_jupyter_1 | 2: a maximum duration for the function. If the timeout expires,
rocketjoe_jupyter_1 | 2: a `tornado.util.TimeoutError` is raised.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: This method is useful to allow asynchronous calls in a
rocketjoe_jupyter_1 | 2: ``main()`` function::
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: async def main():
rocketjoe_jupyter_1 | 2: # do stuff...
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: if __name__ == '__main__':
rocketjoe_jupyter_1 | 2: IOLoop.current().run_sync(main)
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 4.3
rocketjoe_jupyter_1 | 2: Returning a non-``None``, non-awaitable value is now an error.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: .. versionchanged:: 5.0
rocketjoe_jupyter_1 | 2: If a timeout occurs, the ``func`` coroutine will be cancelled.
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: """
rocketjoe_jupyter_1 | 2: future_cell = [None] # type: List[Optional[Future]]
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def run() -> None:
rocketjoe_jupyter_1 | 2: try:
rocketjoe_jupyter_1 | 2: result = func()
rocketjoe_jupyter_1 | 2: if result is not None:
rocketjoe_jupyter_1 | 2: from tornado.gen import convert_yielded
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: result = convert_yielded(result)
rocketjoe_jupyter_1 | 2: except Exception:
rocketjoe_jupyter_1 | 2: fut = Future() # type: Future[Any]
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: future_set_exc_info(fut, sys.exc_info())
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: if is_future(result):
rocketjoe_jupyter_1 | 2: future_cell[0] = result
rocketjoe_jupyter_1 | 2: else:
rocketjoe_jupyter_1 | 2: fut = Future()
rocketjoe_jupyter_1 | 2: future_cell[0] = fut
rocketjoe_jupyter_1 | 2: fut.set_result(result)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: self.add_future(future_cell[0], lambda future: self.stop())
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: self.add_callback(run)
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def timeout_callback() -> None:
rocketjoe_jupyter_1 | 2: # If we can cancel the future, do so and wait on it. If not,
rocketjoe_jupyter_1 | 2: # Just stop the loop and return with the task still pending.
rocketjoe_jupyter_1 | 2: # (If we neither cancel nor wait for the task, a warning
rocketjoe_jupyter_1 | 2: # will be logged).
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if not future_cell[0].cancel():
rocketjoe_jupyter_1 | 2: self.stop()
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: timeout_handle = self.add_timeout(self.time() + timeout, timeout_callback)
rocketjoe_jupyter_1 | 2: self.start()
rocketjoe_jupyter_1 | 2: if timeout is not None:
rocketjoe_jupyter_1 | 2: self.remove_timeout(timeout_handle)
rocketjoe_jupyter_1 | 2: assert future_cell[0] is not None
rocketjoe_jupyter_1 | 2: if future_cell[0].cancelled() or not future_cell[0].done():
rocketjoe_jupyter_1 | 2: > raise TimeoutError("Operation timed out after %s seconds" % timeout)
rocketjoe_jupyter_1 | 2: E tornado.util.TimeoutError: Operation timed out after 60 seconds
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/tornado/ioloop.py:531: TimeoutError
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: During handling of the above exception, another exception occurred:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: benchmark = <pytest_benchmark.fixture.BenchmarkFixture object at 0x7fba95e48358>
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: def test_rocketjoe_is_complete_request_1(benchmark) -> None:
rocketjoe_jupyter_1 | 2: > with jupyter_kernel_mgmt.run_kernel_blocking('spec/rocketjoe') as kc:
rocketjoe_jupyter_1 | 2:
rocketjoe_jupyter_1 | 2: test/test_jupyter_kernel.py:121:
rocketjoe_jupyter_1 | 2: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
rocketjoe_jupyter_1 | 2: /usr/lib/python3.7/contextlib.py:112: in __enter__
rocketjoe_jupyter_1 | 2: return next(self.gen)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:74: in run_kernel_blocking
rocketjoe_jupyter_1 | 2: km, kc = start_kernel_blocking(name, **kwargs)
rocketjoe_jupyter_1 | 2: /usr/local/lib/python3.7/dist-packages/jupyter_kernel_mgmt/hl.py:57: in start_kernel_blocking
rocketjoe_jupyter_1 | 2: kc.wait_for_ready(timeo
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