Created
July 1, 2021 15:22
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Save leipzig/4c5222e39755219e91cb3e3b05585f8b to your computer and use it in GitHub Desktop.
all the public tool descriptions from https://igor.sbgenomics.com/public/apps
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| - ABRA2: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/abra2-12-germline/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/abra2-12-somatic/2 | |
| - Admixture: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/admixture-1-3-0/4 | |
| - AmpliconQC: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-ampliconqc-amplicon-coverage/1 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-ampliconqc-coverage-heatmap/1 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-ampliconqc-mark-failed-amplicons/1 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-ampliconqc-merge-coverage-beds/1 | |
| - AnnotSV: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/annotsv-3-0-7-cwl1-1/4 | |
| - BAM readcount: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/somaticsniper-bam-readcount-v1-0-5-0/3 | |
| - BEDTools: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bedtools-coverage-2-25-0/10 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bedtools-genomecov-2-25-0/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bedtools-getfasta/2 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bedtools-intersect-2-25-0/13 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bedtools-merge-2-25-0/9 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bedtools-sort-2-25-0/6 | |
| - BUStools: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bustools-0-39-3/6 | |
| - BWA: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bwa-index-0-7-17/1 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bwa-mem-bundle-0-7-13/68 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bwa-mem-bundle-0-7-17/44 | |
| - Ballgown: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/ballgown-2-8-4/10 | |
| - BamTools: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bamtools-split-2-4-0/10 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bamtools-merge-2-4-0/20 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bamtools-index-2-4-0/30 | |
| - Bismark: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bismark-0-21-0/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bismark2bedgraph/2 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bismark2report/2 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bismark2summary/0 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bismark-bam2nuc-0-21-0/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bismark-bam2nuc-0-21-0/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bismark-bismark2bedgraph-0-21-0/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bismark-bismark2report-0-21-0/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bismark-bismark2summary-0-21-0/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bismark-coverage2cytosine-0-21-0/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bismark-deduplicate-0-21-0/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bismark-filter-non-conversion-0-21-0/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bismark-genome-preparation-0-21-0/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bismark-methylation-extractor-0-21-0/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bismark-nome-filtering-0-21-0/4 | |
| - BitMapperBS: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bitmapperbs-align-1-0-2-3/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bitmapperbs-index-1-0-2-3/6 | |
| - Bowtie2: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bowtie2-aligner/18 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bowtie2-indexer/4 | |
| - Bracken: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bracken-2-5/2 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bracken-build-2-5/2 | |
| - BreakDancer: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/breakdancer/17 | |
| - BreakSeq: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/breakseq-lite/5 | |
| - CNVnator: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/cnvnator-0-3-2/19 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/cnvnator2vcf/1 | |
| - Cas-OFFinder: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/cas-offinder-2-4/4 | |
| - Centrifuge: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/centrifuge-build/12 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/centrifuge-classifier-1/15 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/centrifuge-download/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/centrifuge-inspect/11 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/centrifuge-kreport/6 | |
| - Chimera: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/chimera-1-12-0/13 | |
| - ChimeraScan: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/chimerascan-gtf2genepred-0-4-5/7 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/chimerascan-index-0-4-5/9 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/chimerascan-make-html-0-4-5/6 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/chimerascan-run-0-4-5/13 | |
| - Circos: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/circos-0-68/12 | |
| - Comet: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/comet-2016-01/7 | |
| - Control-FREEC: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/control-freec-11-5/4 | |
| - CrossMap: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/crossmap/18 | |
| - Cufflinks: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/cuffdiff/6 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/cufflinks/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/cuffnorm/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/cuffquant/2 | |
| - CummeRbund: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/cummerbundqc/2 | |
| - Cutadapt: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/cutadapt-2-9/6 | |
| - DESeq2: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/deseq2-1-26-0/7 | |
| - DEXSeq: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/dexseq-1-36-0/2 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/dexseq-count-1-36-0/2 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/dexseq-dtu-1-36-0/2 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/dexseq-prepare-annotation-1-36-0/2 | |
| - DRIMSeq: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/drimseq-1-16-1/2 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/dexseq-dtu-1-36-0/2 | |
| - DeNovoGear: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/denovogear-0-5-4/3 | |
| - DeepVariant: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/deepvariant/3 | |
| - Delly: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/delly-0-7-8-call/8 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/delly-0-7-8-call-filter/8 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/delly-0-7-8-filter/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/delly-0-7-8-merge/6 | |
| - Delly2: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/delly2-0-7-1/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/delly2-add-reference-allele-0-7-1/1 | |
| - EPACTS: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/epacts-annotate-3-4-2/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/epacts-create-kinship-matrix-3-4-2/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/epacts-create-marker-group-file-3-4-2/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/epacts-groupwise-burden-test-3-4-2/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/epacts-plot-3-4-2/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/epacts-single-variant-test-3-4-2/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/epacts-zoom-plot-3-3-0/3 | |
| - Eautils: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/eautils-fastq-mcf-1-1-2/7 | |
| - Exomiser: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/exomiser-12-1-0-cwl1-1/2 | |
| - FastQC: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/fastqc-0-11-4/19 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/fastqc-0-11-9/5 | |
| - Fastp: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/fastp-0-20-1/8 | |
| - Flexbar: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/flexbar/6 | |
| - Freebayes: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/fbd/79 | |
| - GATK: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/gatk-4-0-applybqsr/27 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/gatk-applybqsr-4-1-0-0/20 | |
| - GRIDSS: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/gridss-1-8-0/7 | |
| - GffCompare: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/gffcompare-0-11-6/3 | |
| - HISAT2: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/hisat2-2-2-1/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/hisat2-build-2-2-1/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/hisat2-extractexons-2-2-1/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/hisat2-extractsnpshaplotypes-2-2-1/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/hisat2-extractsplicesites-2-2-1/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/hisat2-inspect-2-2-1/3 | |
| - HTSeq: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/htseq-count/5 | |
| - HUMAnN2: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/humann2/11 | |
| - IDR: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/idr-2-0-2/3 | |
| - IsoformSwitchAnalyzeR: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/isoformswitchanalyzer-1-12-0/2 | |
| - Kallisto: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/kallisto-bus-0-46-0/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/kallisto-h5dump-0-43-1/6 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/kallisto-index-0-46-0/6 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/kallisto-pseudo-0-46-0/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/kallisto-quant-0-46-0/4 | |
| - Kraken2: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/kraken2-2-0-9/6 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/kraken2-build-2-0-9/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/kraken2-inspect-2-0-9/4 | |
| - Lumpy: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/lumpy-express/3 | |
| - MACS: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/macs2/7 | |
| - MBASED: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/mbased/4 | |
| - MSIsensor: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/msisensor-msi-0-2/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/msisensor-scan-0-2/7 | |
| - Manta: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/manta-1-4-0/16 | |
| - MaxQuant: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/maxquant-1-6-5-0/6 | |
| - MethylDackel: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/methyldackel-extract-0-5-1/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/methyldackel-mbias-0-5-1/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/methyldackel-mergecontext-0-5-1/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/methyldackel-perread-0-5-1/4 | |
| - MultiQC: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/multiqc-1-9/2 | |
| - NanoPlot: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/nanoplot-1-33-0-cwl1-1/4 | |
| - Oncofuse: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/oncofuse-1-1-0/10 | |
| - OptiType: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/optitype-adjusted-1-2/14 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/optitype-1-2-cwl1-0/11 | |
| - PLINK: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/plink-1-90/2 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/plink-2-0/4 | |
| - PRSice-2: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/prsice-2-2-3-3-cwl1-1/4 | |
| - Picard: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/picard-addorreplacereadgroups-1-140/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/picard-bedtointervallist-2-21-6-cwl1-0/6 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/picard-buildbamindex-1-140/6 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/picard-calculatehsmetrics-1-140/2 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/picard-cleansam-1-140/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/picard-collectalignmentsummarymetrics-1-140/7 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/picard-collectalignmentsummarymetrics-2-21-6-cwl1-0/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/picard-collectgcbiasmetrics-1-140/7 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/picard-collecthsmetrics-2-21-6-cwl1-0/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/picard-collectgcbiasmetrics-1-140/7 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/picard-collecthsmetrics-2-21-6-cwl1-0/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/picard-collectinsertsizemetrics-1-140/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/picard-collectmultiplemetrics-2-21-6-cwl1-0/7 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/picard-collectrnaseqmetrics-1-140/5 | |
| - Pizzly: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/pizzly-0-37-3/15 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/pizzly-0-37-3-cwl-1-0/4 | |
| - RNA-SeQC: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/RNA-SeQC/9 | |
| - RSEM: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/rsem-calculate-expression-1-3-3/1 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/rsem-plot-model-1-3-3/1 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/rsem-prepare-reference-1-3-3/1 | |
| - RSeQC: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/rseqc-junction-saturation/0 | |
| - SAIGE: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/saige-createsparsegrm-0-39-cwl1-0/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/saige-step1-fitnullglmm-0-39-cwl1-0/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/saige-step2-spatests-0-39-cwl1-0/5 | |
| - SAMtools: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-collate-1-6/6 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-collate-1-9-cwl1-0/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-coverage-1-10-cwl1-0/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-depth-1-3/8 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-dict-1-6/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-dict-1-9-cwl1-0/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-faidx-1-6/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-faidx-1-9-cwl1-0/6 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-fasta-1-6/7 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-fasta-1-9-cwl1-0/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-fastq-1-8/4 | |
| - SBGTools: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-bedpe4oncofuse/6 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-chimerascan4circos/1 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-compressor-1-0/19 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-compressor-cwl1-0/10 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-convert-sra-bam-to-fastq/7 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-coverage/1 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-create-rsem-tpm-counts-matrix/40 | |
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| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-fasta-indices/27 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-fastqc-beautifier/1 | |
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| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-fastq-quality-adjuster/15 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-fastq-quality-converter/3 | |
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| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-fastq-split/7 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-filterfasta/1 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-flatten/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-flattenlists/7 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-gc-content/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-gc-coverage/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-genome-coverage/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-group-input/7 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-html2b64/12 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/loci-snapshoter/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-oncofuse4circos/12 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-pair-contigs/13 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-pair-fastqs-by-metadata/16 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-pass-contigs/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-pass-intervals/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-ped-file-creator/1 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-picard-gatherbamfiles-sorted/1 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-prepare-for-gsea/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-prepare-gatk-variantrecalibrator-resource/13 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-prepare-intervals/99 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/push-to-solvebio/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-report-renderer-2/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-samtools-mpileup-merge-out/15 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-splitfasta/2 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-text2html/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-ucsc-b37-bed-converter/1 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-unpack-fastqs-1-0/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-untar-fasta/12 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-vcf2json/1 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-vcf-reorder/1 | |
| - SHAPEIT: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/shapeit-4-4-2-1-cwl1-1/2 | |
| - SPP: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/spp-1-14/2 | |
| - SRA Toolkit: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sra-toolkit-fastq-dump-2-8-0/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sam-dump/0 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sra-fasterq-dump-v2-10-8/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sra-fastq-dump-v2-10-8/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sra-sam-dump-v2-10-8/3 | |
| - STAR: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/star-2-7-3a/10 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/star-genome-generate-2-7-3a/1 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/star-long-2-6-0c/8 | |
| - STAR-Fusion: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/star-fusion-v1-9-0/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/star-fusion-build-fusionfilter-dataset-v1-9-0/1 | |
| - Salmon: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/salmon-index-1-2-0/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/salmon-alevin-1-2-0/1 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/salmon-quant-alignment-1-2-0/2 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/salmon-quant-reads-1-2-0/2 | |
| - Sambamba: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sambamba-index-0-5-9/8 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sambamba-merge-0-5-9/20 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sambamba-sort-0-5-9/13 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sambamba-view-0-5-9/9 | |
| - SeqAn: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/microrazers/6 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/razers3/11 | |
| - Sleuth: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sleuth-0-30-0/2 | |
| - Sniffles: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sniffles-1-0-12b-cwl1-1/4 | |
| - SnpEff: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/snpeff-4-3/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/snpeff-4-3t-cwl1-0/10 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/snpsift-annotate-4-3/2 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/snpsift-annotate-4-3t-cwl1-0/7 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/snpsift-dbnsfp-4-3/2 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/snpsift-dbnsfp-4-3t-cwl-1-0/6 | |
| - SomaticSniper: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/somaticsniper-v1-0-5-0/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/somaticsniper-v1-0-5-0/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/somaticsniper-hc-filter-v1-0-5-0/1 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/somaticsniper-prepare-for-bam-readcount-v1-0-5-0/1 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/somaticsniper-snp-filter-v1-0-5-0/1 | |
| - SpectraST: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/tpp-spectrast-create-5-0-0/7 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/tpp-spectrast-search-5-0-0/7 | |
| - Strelka: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/strelka-1-0-15/5 | |
| - Strelka2: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/strelka2-germline-2-9-10/4 | |
| - StringTie: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/stringtie-2-1-3/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/stringtie-merge-2-1-3/3 | |
| - TPP: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/tpp-asapratiopeptideparser-5-0-0/12 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/tpp-asapratioproteinratioparser-5-0-0/6 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/tpp-asapratiopvalueparser-5-0-0/9 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/tpp-interactparser-5-0-0/9 | |
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| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/tpp-librapeptideparser-5-0-0/13 | |
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| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/tpp-peptideprophet-5-0-0/9 | |
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| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/tpp-xpresspeptideparser-5-0-0/9 | |
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| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/idconvert-5-0-0/4 | |
| - Tabix: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/tabix-bgzip-1-11/1 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/tabix-bgzip-1-9-cwl1-0/16 | |
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| - TopHat: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/tophat2/12 | |
| - Torrent Suite: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/tmap-index/10 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/tmap-map1/10 | |
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| - Trim Galore!: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/trim-galore-0-6-2/6 | |
| - Trimmomatic: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/trimmomatic-0-39/1 | |
| - Trinity: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/trinity-assembler-2-4-0/6 | |
| - UCSCTools: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bedgraphtobigwig-3-2-3/2 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bedtobigbed-3-2-3/3 | |
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| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bigwigtobedgraph-3-2-3/2 | |
| - UMI-tools: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/umi-tools-count-1-1-1-cwl1-1/2 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/umi-tools-count-tab-1-1-1-cwl1-1/2 | |
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| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/umi-tools-extract-1-1-1-cwl1-1/2 | |
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| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/umi-tools-whitelist-1-1-1-cwl1-1/3 | |
| - VBT ñ TrioAnalysis: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/mendelian-violation-detector-v1-0/6 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/variant-comparison-v1-0/9 | |
| - VCFtools: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/vcftools-concat-0-1-14/9 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/vcftools-convert/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/vcftools-hardy-0-1-14/3 | |
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| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/vcftools-isec-0-1-14/15 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/vcftools-merge-0-1-14/14 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/vcftools-sort-0-1-14/7 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/vcftools-subset-0-1-14/10 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/vcftools-venn2-0-1-14/17 | |
| - VarScan2: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/varscan2-copycaller-v2-3-9/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/varscan2-copynumber-v2-3-9/7 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/varscan2-filter-v2-3-9/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/varscan2-processsomatic-v2-3-9/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/varscan2-somatic-v2-3-9/11 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/varscan2-somaticfilter-v2-3-9/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/varscan2-somatic-v2-3-9-parallel/4 | |
| - X!Tandem: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/x-tandem-2013-06-15-1/7 | |
| - bcftools: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bcftools-annotate/7 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bcftools-call/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bcftools-cnv/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bcftools-concat/6 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bcftools-consensus/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bcftools-convert/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bcftools-csq/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bcftools-filter/6 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bcftools-gtcheck/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bcftools-index/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bcftools-isec/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bcftools-merge/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bcftools-mpileup/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bcftools-norm/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bcftools-query/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bcftools-reheader/7 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bcftools-roh/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bcftools-sort/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bcftools-stats/6 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/bcftools-view/7 | |
| - centrifuge: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/centrifuge-build/12 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/centrifuge-classifier-1/15 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/centrifuge-download/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/centrifuge-inspect/11 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/centrifuge-kreport/6 | |
| - cuteSV: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/cutesv-1-0-9/4 | |
| - eXpress: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/express/8 | |
| - eXtasy: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/extasy/1 | |
| - elPrep: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/elprep-sfm-4-1-6/8 | |
| - ensembl-vep: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/ensembl-vep-94-2/3 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/filter-vep-94-2/2 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/variant-effect-predictor-101-0-cwl1-0/5 | |
| - fastqvalidator: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/fastqvalidator-0-1-1/7 | |
| - goleft: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/indexcov-0-2-4-cwl1-1/3 | |
| - MSIsensor 0.2: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/msisensor-msi-0-2/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/msisensor-scan-0-2/7 | |
| - minimap2: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/minimap2-v2-17/6 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/minimap2-build-index-v2-17/5 | |
| - novoBreak: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/novobreak/7 | |
| - regenie: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/regenie-2-0-1-cwl1-1/4 | |
| - samtools: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-collate-1-6/6 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-collate-1-9-cwl1-0/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-coverage-1-10-cwl1-0/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-depth-1-3/8 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-dict-1-6/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-dict-1-9-cwl1-0/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-faidx-1-6/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-faidx-1-9-cwl1-0/6 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-fasta-1-6/7 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-fasta-1-9-cwl1-0/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-fastq-1-8/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-fastq-1-9-cwl1-0/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-fixmate-1-6/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-fixmate-1-9-cwl1-0/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-index-1-6/6 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-index-1-9-cwl1-0/6 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-markdup-1-6/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-markdup-1-9-cwl1-0/5 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-mpileup-1-6/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-mpileup-1-9-cwl1-0/6 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-sort-1-6/6 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-sort-1-9-cwl1-0/7 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-view-1-6/4 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/samtools-view-1-9-cwl1-0/6 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/sbg-samtools-mpileup-merge-out/15 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/reheader-1-3/5 | |
| - seq2HLA: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/seq2hla-2-3-cwl-1-0/6 | |
| - svf: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/smart-variant-filtering/4 | |
| - vcf2db: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/vcf2db-89f3a30d-cwl1-1/6 | |
| - vcfanno: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/vcfanno-0-3-2-cwl1-1/5 | |
| - xCell: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/xcell-analysis-1-3/4 | |
| - zUMIs: | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/zumis/8 | |
| - https://igor.sbgenomics.com/raw/admin/sbg-public-data/zumis-2-5-5/3 |
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