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| /* | |
| * Create a float image the size of a short image | |
| * This is an example of how to create an image of | |
| * a different type but same size as a given image | |
| */ | |
| FloatImageType::Pointer ppRecruitImage = FloatImageType::New(); | |
| //define origin and size the same as the input | |
| //get the biggest region (which usually is the whole image) |
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| def DrawTower(x,y,z,a): | |
| bpy.ops.mesh.primitive_cube_add(location=(x,y,z+1), rotation = (0,0,a)) | |
| bpy.ops.mesh.primitive_cylinder_add(location=(x,y,z+3), rotation = (0,0,a)) | |
| bpy.ops.mesh.primitive_cone_add(location=(x,y,z+5), rotation = (0,0,a)) | |
| def DrawTowers(n): | |
| for i in range (0,n): | |
| DrawTower(cos((2*pi*i)/n)*4,sin((2*pi*i)/n)*4,0,2*pi/n*i) | |
| def DrawTowersCircle(n,r,cx,cy): |
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| #Copy directory structure | |
| cd /path/to/directories && | |
| find . -type d -exec mkdir -p -- /path/to/backup/{} \; | |
| #copy files of certain extension | |
| #http://superuser.com/questions/299938/how-can-i-recursively-copy-files-by-file-extension-preserving-directory-structu | |
| cd /source/path | |
| find -type f -name \*.txt -exec install -D {} /dest/path/{} \; |
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| from PIL import Image | |
| import numpy | |
| im=Image.open('C:/Users/Administrator/Documents/Leslie/Uppsala/registered161101/crops/b1-2-0001-1757-1887-White Top Hat.tif') | |
| def makeMaterial(name, diffuse, specular, alpha): | |
| mat = bpy.data.materials.new(name) | |
| mat.diffuse_color = diffuse | |
| mat.diffuse_shader = 'LAMBERT' | |
| mat.diffuse_intensity = 1.0 |
lesolorzanov
/ screens.m
Created
January 9, 2017 11:05
Enhances spots and creates gimplike screen version
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| clear all; | |
| base=5; | |
| if(base==1) | |
| b3=imread('MAX_base_1_ch3.tif'); | |
| b4=imread('MAX_base_1_ch4.tif'); | |
| b5=imread('MAX_base_1_ch5.tif'); | |
| b6=imread('MAX_base_1_ch6.tif'); | |
| finalname='b1-color.tif'; |
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| close all | |
| clear all | |
| fname ='C:\Users\Administrator\Documents\Leslie\Uppsala\registered161101\crops\b1-2-0001-1757-1887-White Top Hat.tif'; | |
| info = imfinfo(fname); | |
| num_images = numel(info); | |
| w =info.Width; | |
| h= info.Height; |
lesolorzanov
/ iwild.html
Last active
May 27, 2019 16:49
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| <html> | |
| <head> | |
| <script src="https://d3js.org/d3.v4.min.js"></script> | |
| <script src="https://cdnjs.cloudflare.com/ajax/libs/p5.js/0.8.0/p5.js"></script> | |
| <script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js"></script> | |
| <script src="/home/leslie/Downloads/iWildCam_2019_iNat_Idaho.json"></script> | |
| <script src="/home/leslie/Downloads/iWildCam_2019_CCT_Bboxes.json"></script> | |
| <!-- Latest compiled and minified CSS --> | |
| <link rel="stylesheet" href="https://stackpath.bootstrapcdn.com/bootstrap/3.4.1/css/bootstrap.min.css" |
lesolorzanov
/ mergiwild.ipynb
Last active
May 31, 2019 17:39
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| location="/home/leslie/Documents/alphaamd/" | |
| imgs=["cells2little.png"] | |
| def drawboxesat(pdx, iw, ih, q): | |
| step=1/q | |
| for x in range(iw): | |
| for y in range(ih): | |
| intensity=pdx[(x,y)][0] | |
| if intensity==0: |
lesolorzanov
/ QuPathImportAnnotations.groovy
Last active
December 9, 2020 10:25
Importig Annotation path objects after classifying outside of QuPath
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| // Title: Importig Annotation path objects after classifying outside of QuPath | |
| // Author: Leslie Solorzano | |
| // Date: 9 dec 2020 | |
| import qupath.lib.objects.PathObjects | |
| import qupath.lib.roi.ROIs | |
| import qupath.lib.regions.ImagePlane | |
| import qupath.lib.io.GsonTools | |
| import qupath.lib.geom.Point2 | |
| import qupath.lib.objects.classes.PathClass |
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