Leslie Evelyn Solorzano lesolorzanov

## hex_color_to_rgba.py
# give Python access to Blender's functionality
import bpy

# extend Python's math functionality
import math


def hex_color_to_rgba(hex_color):
    # remove the leading '#' symbol
    hex_color = hex_color[1:]

## QuPath-Import qpdata files to project.groovy
/**
 * Import images from .qpdata files into a new project in QuPath v0.2.x.
 *
 * The purpose of this is to help recover data from files that were saved outside a project.
 * It may not work for all images, but should work for most 'straightforward' examples (i.e. a single image per image file).
 *
 * If your .qpdata files are already part of a v0.1.2 project, use 'File -> Project... -> Import images from v0.1.2' instead.
 * If your .qpdata files are already part of a v0.2.0 project, use 'File -> Project... -> Add images' and add the .qpproj file instead.
 *
 * Warning! This hasn't been very extensively tested (I always use projects from the start...).

## spherespiral.pde
// Processing code by Etienne JACOB
// motion blur template by beesandbombs
// opensimplexnoise code in another tab might be necessary
// --> code here : https://gist.github.com/Bleuje/fce86ef35b66c4a2b6a469b27163591e

int[][] result;
float t, c;

float ease(float p) {
  return 3*p*p - 2*p*p*p;

## multiple-ssh-keys-git.adoc

      
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                Configure multiple SSH Keys for Git
              
          
    Use Multiple SSH Keys for Git host websites (Github, Gitlab)


This is guide about how to configure multiple SSH keys for some Git host
websites such as Github, Gitlab, among others.


Creating SSH keys


Create SSH directory:


## !Changing colors in QuPath
Collections of scripts to alter object colors harvested mainly from Pete, but also picked up from the forums
TOC

Change IF channel color.groovy - Change the LUT for individual channels. Does not work with OpenSlide servers (check Image tab).

Change colors by subclass.groovy - Detection object color adjustment when using subclasses.

Change subcellular detection color - Hugely useful when working with subcellular detections as, by default, they are a derived class
and cannot be altered directly through the Annotation tab interface.

## crop_resize.py
from scipy import interpolate

def crop_and_resample_2darray(arr, x_crop, y_crop, resample, *args, **kwargs):
    """Crop a 2darray and resize the data"""

    len_x_crop = x_crop[1]-x_crop[0]
    len_y_crop = y_crop[1]-y_crop[0]

    arr_crop = arr[x_crop[0]:x_crop[1], y_crop[0]:y_crop[1]]
    f = interpolate.interp2d(np.arange(len_y_crop),

## imagenet1000_clsidx_to_labels.txt
{0: 'tench, Tinca tinca',
 1: 'goldfish, Carassius auratus',
 2: 'great white shark, white shark, man-eater, man-eating shark, Carcharodon carcharias',
 3: 'tiger shark, Galeocerdo cuvieri',
 4: 'hammerhead, hammerhead shark',
 5: 'electric ray, crampfish, numbfish, torpedo',
 6: 'stingray',
 7: 'cock',
 8: 'hen',
 9: 'ostrich, Struthio camelus',

## index.html
<!DOCTYPE html>
<html>
<head>
  <meta charset="utf-8">
  <title>D3 Drawing</title>
  <script src="https://cdn.jsdelivr.net/d3js/3.5.9/d3.min.js"></script>
</head>
<body>
  <h3>Draw a polygon :D</h3>
  <script>

## orthoregress.py
# Copyright (c) 2013, Robin Wilson
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#     * Redistributions of source code must retain the above copyright
#       notice, this list of conditions and the following disclaimer.
#     * Redistributions in binary form must reproduce the above copyright
#       notice, this list of conditions and the following disclaimer in the
#       documentation and/or other materials provided with the distribution.

## imageViewer.html
<html>
<head>
<script src="http://code.jquery.com/jquery-1.11.0.min.js"></script>
</head>
<body>
	<img id="viewer" src="" width="800px"/>
	<div id="info"> </div>
<script>
$(function() {
	# give Python access to Blender's functionality
	import bpy

	# extend Python's math functionality
	import math


	def hex_color_to_rgba(hex_color):
	# remove the leading '#' symbol
	hex_color = hex_color[1:]
	/**
	* Import images from .qpdata files into a new project in QuPath v0.2.x.
	*
	* The purpose of this is to help recover data from files that were saved outside a project.
	* It may not work for all images, but should work for most 'straightforward' examples (i.e. a single image per image file).
	*
	* If your .qpdata files are already part of a v0.1.2 project, use 'File -> Project... -> Import images from v0.1.2' instead.
	* If your .qpdata files are already part of a v0.2.0 project, use 'File -> Project... -> Add images' and add the .qpproj file instead.
	*
	* Warning! This hasn't been very extensively tested (I always use projects from the start...).
	// Processing code by Etienne JACOB
	// motion blur template by beesandbombs
	// opensimplexnoise code in another tab might be necessary
	// --> code here : https://gist.github.com/Bleuje/fce86ef35b66c4a2b6a469b27163591e

	int[][] result;
	float t, c;

	float ease(float p) {
	return 3pp - 2pp*p;
	Collections of scripts to alter object colors harvested mainly from Pete, but also picked up from the forums
	TOC

	Change IF channel color.groovy - Change the LUT for individual channels. Does not work with OpenSlide servers (check Image tab).

	Change colors by subclass.groovy - Detection object color adjustment when using subclasses.

	Change subcellular detection color - Hugely useful when working with subcellular detections as, by default, they are a derived class
	and cannot be altered directly through the Annotation tab interface.
	from scipy import interpolate

	def crop_and_resample_2darray(arr, x_crop, y_crop, resample, args, *kwargs):
	"""Crop a 2darray and resize the data"""

	len_x_crop = x_crop[1]-x_crop[0]
	len_y_crop = y_crop[1]-y_crop[0]

	arr_crop = arr[x_crop[0]:x_crop[1], y_crop[0]:y_crop[1]]
	f = interpolate.interp2d(np.arange(len_y_crop),
	{0: 'tench, Tinca tinca',
	1: 'goldfish, Carassius auratus',
	2: 'great white shark, white shark, man-eater, man-eating shark, Carcharodon carcharias',
	3: 'tiger shark, Galeocerdo cuvieri',
	4: 'hammerhead, hammerhead shark',
	5: 'electric ray, crampfish, numbfish, torpedo',
	6: 'stingray',
	7: 'cock',
	8: 'hen',
	9: 'ostrich, Struthio camelus',
	<!DOCTYPE html>
	<html>
	<head>
	<meta charset="utf-8">
	<title>D3 Drawing</title>
	<script src="https://cdn.jsdelivr.net/d3js/3.5.9/d3.min.js"></script>
	</head>
	<body>
	<h3>Draw a polygon :D</h3>
	<script>
	# Copyright (c) 2013, Robin Wilson
	# All rights reserved.
	#
	# Redistribution and use in source and binary forms, with or without
	# modification, are permitted provided that the following conditions are met:
	# * Redistributions of source code must retain the above copyright
	# notice, this list of conditions and the following disclaimer.
	# * Redistributions in binary form must reproduce the above copyright
	# notice, this list of conditions and the following disclaimer in the
	# documentation and/or other materials provided with the distribution.
	<html>
	<head>
	<script src="http://code.jquery.com/jquery-1.11.0.min.js"></script>
	</head>
	<body>
	<img id="viewer" src="" width="800px"/>
	<div id="info"> </div>
	<script>
	$(function() {