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May 20, 2014 12:55
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Building boost on OS X Mavericks without patches - failure.
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| Fetching package metadata: .... | |
| Solving package specifications: . | |
| The following packages will be linked: | |
| package | build | |
| ---------------------------|----------------- | |
| bzip2-1.0.6 | 0 hard-link | |
| openssl-1.0.1g | 0 hard-link | |
| python-2.7.6 | 1 hard-link | |
| readline-6.2 | 2 hard-link | |
| sqlite-3.8.4.1 | 0 hard-link | |
| tk-8.5.15 | 0 hard-link | |
| zlib-1.2.7 | 1 hard-link | |
| Linking packages ... | |
| [ COMPLETE ] |##################################################| 100% | |
| BUILD START: boost-1.55.0-py27_1 | |
| Source cache directory is: /Users/RichLewis/anaconda/conda-bld/src_cache | |
| Found source in cache: boost_1_55_0.tar.bz2 | |
| source tree in: /Users/RichLewis/anaconda/conda-bld/work/boost_1_55_0 | |
| + export 'CFLAGS=-m64 -pipe -O2 -march=x86-64 -fPIC -shared' | |
| + CFLAGS='-m64 -pipe -O2 -march=x86-64 -fPIC -shared' | |
| + export 'CXXFLAGS=-m64 -pipe -O2 -march=x86-64 -fPIC -shared' | |
| + CXXFLAGS='-m64 -pipe -O2 -march=x86-64 -fPIC -shared' | |
| + mkdir -vp /Users/RichLewis/anaconda/envs/_build/bin | |
| + ./bootstrap.sh --prefix=/Users/RichLewis/anaconda/envs/_build/ | |
| -n Building Boost.Build engine with toolset darwin... | |
| tools/build/v2/engine/bin.macosxx86_64/b2 | |
| -n Detecting Python version... | |
| 2.7 | |
| -n Detecting Python root... | |
| /Users/RichLewis/anaconda/envs/_build | |
| -n Unicode/ICU support for Boost.Regex?... | |
| not found. | |
| Generating Boost.Build configuration in project-config.jam... | |
| Bootstrapping is done. To build, run: | |
| ./b2 | |
| To adjust configuration, edit 'project-config.jam'. | |
| Further information: | |
| - Command line help: | |
| ./b2 --help | |
| - Getting started guide: | |
| http://www.boost.org/more/getting_started/unix-variants.html | |
| - Boost.Build documentation: | |
| http://www.boost.org/boost-build2/doc/html/index.html | |
| + sed -i.bak '-es/^using python.*;//' ./project-config.jam | |
| ++ /Users/RichLewis/anaconda/envs/_build/bin/python -c 'from distutils import sysconfig; print (sysconfig.get_python_inc(0, '\''/Users/RichLewis/anaconda/envs/_build'\''))' | |
| + PY_INC=/Users/RichLewis/anaconda/envs/_build/include/python2.7 | |
| + echo 'using python' | |
| + echo ' : 2.7' | |
| + echo ' : /Users/RichLewis/anaconda/envs/_build/bin/python' | |
| + echo ' : /Users/RichLewis/anaconda/envs/_build/include/python2.7' | |
| + echo ' : /Users/RichLewis/anaconda/envs/_build/lib' | |
| + echo ' ;' | |
| + ./b2 -q install --debug-configuration -j8 | |
| notice: found boost-build.jam at /Users/RichLewis/anaconda/conda-bld/work/boost_1_55_0/boost-build.jam | |
| notice: loading Boost.Build from /Users/RichLewis/anaconda/conda-bld/work/boost_1_55_0/tools/build/v2 | |
| notice: Searching '/etc' '/Users/RichLewis' '/Users/RichLewis/anaconda/conda-bld/work/boost_1_55_0/tools/build/v2' '/usr/share/boost-build' '/Users/RichLewis/anaconda/conda-bld/work/boost_1_55_0/tools/build/v2/kernel' '/Users/RichLewis/anaconda/conda-bld/work/boost_1_55_0/tools/build/v2/util' '/Users/RichLewis/anaconda/conda-bld/work/boost_1_55_0/tools/build/v2/build' '/Users/RichLewis/anaconda/conda-bld/work/boost_1_55_0/tools/build/v2/tools' '/Users/RichLewis/anaconda/conda-bld/work/boost_1_55_0/tools/build/v2/contrib' '/Users/RichLewis/anaconda/conda-bld/work/boost_1_55_0/tools/build/v2/.' for site-config configuration file 'site-config.jam'. | |
| notice: Loading site-config configuration file 'site-config.jam' from '/Users/RichLewis/anaconda/conda-bld/work/boost_1_55_0/tools/build/v2'. | |
| notice: Searching '/Users/RichLewis' '/Users/RichLewis/anaconda/conda-bld/work/boost_1_55_0/tools/build/v2' '/usr/share/boost-build' '/Users/RichLewis/anaconda/conda-bld/work/boost_1_55_0/tools/build/v2/kernel' '/Users/RichLewis/anaconda/conda-bld/work/boost_1_55_0/tools/build/v2/util' '/Users/RichLewis/anaconda/conda-bld/work/boost_1_55_0/tools/build/v2/build' '/Users/RichLewis/anaconda/conda-bld/work/boost_1_55_0/tools/build/v2/tools' '/Users/RichLewis/anaconda/conda-bld/work/boost_1_55_0/tools/build/v2/contrib' '/Users/RichLewis/anaconda/conda-bld/work/boost_1_55_0/tools/build/v2/.' for user-config configuration file 'user-config.jam'. | |
| notice: Loading user-config configuration file 'user-config.jam' from '/Users/RichLewis/anaconda/conda-bld/work/boost_1_55_0/tools/build/v2'. | |
| notice: Searching '.' for project-config configuration file 'project-config.jam'. | |
| notice: Loading project-config configuration file 'project-config.jam' from '.'. | |
| notice: OSX version on this machine is 10.9.2 | |
| notice: will use 'g++' for darwin, condition <toolset>darwin-4.2.1 | |
| notice: using strip for <toolset>darwin-4.2.1 at /usr/bin/strip | |
| notice: using archiver for <toolset>darwin-4.2.1 at /usr/bin/libtool | |
| notice: [python-cfg] Configuring python... | |
| notice: [python-cfg] user-specified version: "2.7" | |
| notice: [python-cfg] user-specified cmd-or-prefix: "/Users/RichLewis/anaconda/envs/_build/bin/python" | |
| notice: [python-cfg] user-specified includes: "/Users/RichLewis/anaconda/envs/_build/include/python2.7" | |
| notice: [python-cfg] user-specified libraries: "/Users/RichLewis/anaconda/envs/_build/lib" | |
| notice: [python-cfg] Details of this Python configuration: | |
| notice: [python-cfg] interpreter command: "/Users/RichLewis/anaconda/envs/_build/bin/python" | |
| notice: [python-cfg] include path: "/Users/RichLewis/anaconda/envs/_build/include/python2.7" | |
| notice: [python-cfg] library path: "/Users/RichLewis/anaconda/envs/_build/lib" | |
| notice: [python-cfg] no framework directory found; using library path | |
| link.jam: No such file or directory | |
| notice: [zlib] Using pre-installed library | |
| notice: [zlib] Condition | |
| notice: iostreams: using prebuilt bzip2 | |
| Performing configuration checks | |
| - 32-bit : no | |
| - 64-bit : yes | |
| - arm : no | |
| - mips1 : no | |
| - power : no | |
| - sparc : no | |
| - x86 : yes | |
| - has_icu builds : no | |
| warning: Graph library does not contain MPI-based parallel components. | |
| note: to enable them, add "using mpi ;" to your user-config.jam | |
| - zlib : yes | |
| - iconv (libc) : no | |
| - iconv (separate) : yes | |
| - icu : no | |
| - icu (lib64) : no | |
| - compiler-supports-ssse3 : yes | |
| - lockfree boost::atomic_flag : no | |
| - compiler-supports-avx2 : no | |
| - gcc visibility : yes | |
| - long double support : yes | |
| warning: skipping optional Message Passing Interface (MPI) library. | |
| note: to enable MPI support, add "using mpi ;" to user-config.jam. | |
| note: to suppress this message, pass "--without-mpi" to bjam. | |
| note: otherwise, you can safely ignore this message. | |
| - zlib : yes | |
| Component configuration: | |
| - atomic : building | |
| - chrono : building | |
| - context : building | |
| - coroutine : building | |
| - date_time : building | |
| - exception : building | |
| - filesystem : building | |
| - graph : building | |
| - graph_parallel : building | |
| - iostreams : building | |
| - locale : building | |
| - log : building | |
| - math : building | |
| - mpi : building | |
| - program_options : building | |
| - python : building | |
| - random : building | |
| - regex : building | |
| - serialization : building | |
| - signals : building | |
| - system : building | |
| - test : building | |
| - thread : building | |
| - timer : building | |
| - wave : building | |
| ...patience... | |
| ...patience... | |
| ...patience... | |
| ...patience... | |
| ...found 31362 targets... | |
| ...updating 11809 targets... | |
| common.mkdir /Users/RichLewis/anaconda/envs/_build/include/boost | |
| common.mkdir bin.v2/libs/atomic | |
| common.mkdir bin.v2/libs/system/build/darwin-4.2.1/release | |
| common.mkdir bin.v2/libs/chrono | |
| common.mkdir bin.v2/libs/context/build | |
| common.mkdir bin.v2/libs/coroutine | |
| common.mkdir bin.v2/libs/date_time | |
| common.mkdir bin.v2/libs/filesystem | |
| common.mkdir bin.v2/libs/chrono/build | |
| common.mkdir bin.v2/libs/system/build/darwin-4.2.1/release/threading-multi | |
| common.mkdir bin.v2/libs/atomic/build | |
| common.copy /Users/RichLewis/anaconda/envs/_build/include/boost/aligned_storage.hpp | |
| common.mkdir bin.v2/libs/date_time/build | |
| common.mkdir bin.v2/libs/coroutine/build | |
| common.mkdir bin.v2/libs/context/build/darwin-4.2.1 | |
| common.copy /Users/RichLewis/anaconda/envs/_build/include/boost/any.hpp | |
| common.mkdir bin.v2/libs/atomic/build/darwin-4.2.1 | |
| common.mkdir bin.v2/libs/chrono/build/darwin-4.2.1 | |
| common.copy /Users/RichLewis/anaconda/envs/_build/include/boost/array.hpp | |
| common.mkdir bin.v2/libs/context/build/darwin-4.2.1/release | |
| common.mkdir bin.v2/libs/coroutine/build/darwin-4.2.1 | |
| common.mkdir bin.v2/libs/date_time/build/darwin-4.2.1 | |
| common.mkdir bin.v2/libs/chrono/build/darwin-4.2.1/release | |
| common.mkdir bin.v2/libs/atomic/build/darwin-4.2.1/release | |
| common.copy /Users/RichLewis/anaconda/envs/_build/include/boost/asio.hpp | |
| common.copy /Users/RichLewis/anaconda/envs/_build/include/boost/assert.hpp | |
| common.mkdir bin.v2/libs/date_time/build/darwin-4.2.1/release | |
| common.mkdir bin.v2/libs/atomic/build/darwin-4.2.1/release/threading-multi | |
| common.mkdir bin.v2/libs/chrono/build/darwin-4.2.1/release/threading-multi | |
| common.mkdir bin.v2/libs/coroutine/build/darwin-4.2.1/release | |
| common.mkdir bin.v2/libs/context/build/darwin-4.2.1/release/threading-multi | |
| common.mkdir bin.v2/libs/date_time/build/darwin-4.2.1/release/threading-multi | |
| common.copy /Users/RichLewis/anaconda/envs/_build/include/boost/assign.hpp | |
| common.copy /Users/RichLewis/anaconda/envs/_build/include/boost/atomic.hpp | |
| common.mkdir bin.v2/libs/context/build/darwin-4.2.1/release/threading-multi/asm | |
| common.mkdir bin.v2/libs/coroutine/build/darwin-4.2.1/release/threading-multi | |
| common.mkdir bin.v2/libs/date_time/build/darwin-4.2.1/release/threading-multi/gregorian | |
| common.mkdir bin.v2/libs/coroutine/build/darwin-4.2.1/release/threading-multi/detail | |
| darwin.compile.c++ bin.v2/libs/chrono/build/darwin-4.2.1/release/threading-multi/thread_clock.o | |
| darwin.compile.c++ bin.v2/libs/atomic/build/darwin-4.2.1/release/threading-multi/lockpool.o | |
| In file included from libs/atomic/src/lockpool.cpp:3: | |
| In file included from ./boost/atomic.hpp:12: | |
| In file included from ./boost/atomic/atomic.hpp:17: | |
| In file included from ./boost/atomic/detail/platform.hpp:22: | |
| ./boost/atomic/detail/gcc-atomic.hpp:961:64: error: no matching constructor for initialization of 'storage_type' (aka 'boost::atomics::detail::storage128_type') | |
| explicit base_atomic(value_type const& v) BOOST_NOEXCEPT : v_(0) | |
| ^ ~ | |
| ./boost/atomic/detail/gcc-atomic.hpp:932:28: note: candidate constructor (the implicit copy constructor) not viable: no known conversion from 'int' to 'const boost::atomics::detail::storage128_type' for 1st argument | |
| struct BOOST_ALIGNMENT(16) storage128_type | |
| ^ | |
| ./boost/atomic/detail/gcc-atomic.hpp:932:28: note: candidate constructor (the implicit default constructor) not viable: requires 0 arguments, but 1 was provided | |
| ./boost/atomic/detail/gcc-atomic.hpp:968:22: error: no viable conversion from 'int' to 'storage_type' (aka 'boost::atomics::detail::storage128_type') | |
| storage_type tmp = 0; | |
| ^ ~ | |
| ./boost/atomic/detail/gcc-atomic.hpp:932:28: note: candidate constructor (the implicit copy constructor) not viable: no known conversion from 'int' to 'const boost::atomics::detail::storage128_type &' for 1st argument | |
| struct BOOST_ALIGNMENT(16) storage128_type | |
| ^ | |
| ./boost/atomic/detail/gcc-atomic.hpp:983:22: error: no viable conversion from 'int' to 'storage_type' (aka 'boost::atomics::detail::storage128_type') | |
| storage_type tmp = 0; | |
| ^ ~ | |
| ./boost/atomic/detail/gcc-atomic.hpp:932:28: note: candidate constructor (the implicit copy constructor) not viable: no known conversion from 'int' to 'const boost::atomics::detail::storage128_type &' for 1st argument | |
| struct BOOST_ALIGNMENT(16) storage128_type | |
| ^ | |
| ./boost/atomic/detail/gcc-atomic.hpp:997:22: error: no viable conversion from 'int' to 'storage_type' (aka 'boost::atomics::detail::storage128_type') | |
| storage_type expected_s = 0, desired_s = 0; | |
| ^ ~ | |
| ./boost/atomic/detail/gcc-atomic.hpp:932:28: note: candidate constructor (the implicit copy constructor) not viable: no known conversion from 'int' to 'const boost::atomics::detail::storage128_type &' for 1st argument | |
| struct BOOST_ALIGNMENT(16) storage128_type | |
| ^ | |
| ./boost/atomic/detail/gcc-atomic.hpp:997:38: error: no viable conversion from 'int' to 'storage_type' (aka 'boost::atomics::detail::storage128_type') | |
| storage_type expected_s = 0, desired_s = 0; | |
| ^ ~ | |
| ./boost/atomic/detail/gcc-atomic.hpp:932:28: note: candidate constructor (the implicit copy constructor) not viable: no known conversion from 'int' to 'const boost::atomics::detail::storage128_type &' for 1st argument | |
| struct BOOST_ALIGNMENT(16) storage128_type | |
| ^ | |
| ./boost/atomic/detail/gcc-atomic.hpp:1013:22: error: no viable conversion from 'int' to 'storage_type' (aka 'boost::atomics::detail::storage128_type') | |
| storage_type expected_s = 0, desired_s = 0; | |
| ^ ~ | |
| ./boost/atomic/detail/gcc-atomic.hpp:932:28: note: candidate constructor (the implicit copy constructor) not viable: no known conversion from 'int' to 'const boost::atomics::detail::storage128_type &' for 1st argument | |
| struct BOOST_ALIGNMENT(16) storage128_type | |
| ^ | |
| ./boost/atomic/detail/gcc-atomic.hpp:1013:38: error: no viable conversion from 'int' to 'storage_type' (aka 'boost::atomics::detail::storage128_type') | |
| storage_type expected_s = 0, desired_s = 0; | |
| ^ ~ | |
| ./boost/atomic/detail/gcc-atomic.hpp:932:28: note: candidate constructor (the implicit copy constructor) not viable: no known conversion from 'int' to 'const boost::atomics::detail::storage128_type &' for 1st argument | |
| struct BOOST_ALIGNMENT(16) storage128_type | |
| ^ | |
| 7 errors generated. | |
| "g++" -ftemplate-depth-128 -O3 -finline-functions -Wno-inline -Wall -dynamic -gdwarf-2 -fexceptions -fPIC -DBOOST_ALL_NO_LIB=1 -DBOOST_ATOMIC_DYN_LINK=1 -DBOOST_ATOMIC_SOURCE -DNDEBUG -I"." -c -o "bin.v2/libs/atomic/build/darwin-4.2.1/release/threading-multi/lockpool.o" "libs/atomic/src/lockpool.cpp" | |
| ...failed darwin.compile.c++ bin.v2/libs/atomic/build/darwin-4.2.1/release/threading-multi/lockpool.o... | |
| ...skipped <p/Users/RichLewis/anaconda/envs/_build/lib>libboost_atomic.dylib for lack of <pbin.v2/libs/atomic/build/darwin-4.2.1/release/threading-multi>lockpool.o... | |
| ...on 100th target... | |
| ...on 200th target... | |
| darwin.compile.c++ bin.v2/libs/coroutine/build/darwin-4.2.1/release/threading-multi/detail/coroutine_context.o | |
| darwin.compile.c++ bin.v2/libs/coroutine/build/darwin-4.2.1/release/threading-multi/detail/standard_stack_allocator_posix.o | |
| libs/coroutine/src/detail/standard_stack_allocator_posix.cpp:59:15: warning: unused variable 'result' [-Wunused-variable] | |
| const int result = ::getrlimit( RLIMIT_STACK, & limit); | |
| ^ | |
| libs/coroutine/src/detail/standard_stack_allocator_posix.cpp:133:15: warning: unused variable 'result' [-Wunused-variable] | |
| const int result( ::mprotect( limit, detail::pagesize(), PROT_NONE) ); | |
| ^ | |
| 2 warnings generated. | |
| darwin.compile.c++ bin.v2/libs/coroutine/build/darwin-4.2.1/release/threading-multi/exceptions.o | |
| darwin.compile.c++ bin.v2/libs/system/build/darwin-4.2.1/release/threading-multi/error_code.o | |
| darwin.compile.c++ bin.v2/libs/chrono/build/darwin-4.2.1/release/threading-multi/process_cpu_clocks.o | |
| darwin.compile.c++ bin.v2/libs/chrono/build/darwin-4.2.1/release/threading-multi/chrono.o | |
| darwin.compile.c++ bin.v2/libs/date_time/build/darwin-4.2.1/release/threading-multi/gregorian/greg_month.o | |
| ...failed updating 1 target... | |
| ...skipped 1 target... | |
| ...updated 46 targets... | |
| Command failed: /bin/bash -x -e /Users/RichLewis/Git/conda-rdkit/boost/build.sh |
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