EasyBuild test report for easybuilders/easybuild-easyconfigs PR(s) #17604

easybuild_test_report_17604_easybuilders_preasybuild-easyconfigs_20233714-UTC-04-37-17.md

Test report for PR(s) easybuilders/easybuild-easyconfigs#17604

Test result

Build succeeded for 4 out of 4 (4 easyconfigs in total)

Overview of tested easyconfigs (in order)

• SUCCESS HH-suite-3.3.0-gompi-2022a.eb
• SUCCESS Kalign-3.3.5-GCCcore-11.3.0.eb
• SUCCESS OpenMM-8.0.0-foss-2022a-CUDA-11.7.0.eb
• SUCCESS AlphaFold-2.3.1-foss-2022a-CUDA-11.7.0.eb

Time info

• start: Fri, 14 Apr 2023 03:16:33 +0000 (UTC)
• end: Fri, 14 Apr 2023 04:37:17 +0000 (UTC)

EasyBuild info

• easybuild-framework version: 4.7.1.dev0-r9b480c8b7d4e7981feddd842efbb867dc053f388
• easybuild-easyblocks version: 4.7.1.dev0-rb201c21a816281431a2c60f184a965521b604d40
• command line:

eb --rebuild --trace --parallel=8 --robot=/user/brussel/101/vsc10122/src/easybuild-easyconfigs/easybuild/easyconfigs --tmp-logdir=/user/brussel/101/vsc10122/easybuild/install/zen2/log --tmpdir=/tmp --from-pr 17604 --upload-test-report --cuda-compute-capabilities=8.0

• full configuration (includes defaults):

--accept-eula-for=''
--accept-eula=''
--allow-loaded-modules='EasyBuild'
--buildpath='/user/brussel/101/vsc10122/easybuild/install/zen2/build'
--check-ebroot-env-vars='warn'
--cleanup-builddir
--cleanup-easyconfigs
--cleanup-tmpdir
--color='auto'
--container-type='singularity'
--containerpath='/user/brussel/101/vsc10122/easybuild/install/zen2/containers'
--cuda-compute-capabilities='8.0'
--default-opt-level='defaultopt'
--detect-loaded-modules='warn'
--disable-add-dummy-to-minimal-toolchains
--disable-add-system-to-minimal-toolchains
--disable-allow-modules-tool-mismatch
--disable-allow-use-as-root-and-accept-consequences
--disable-avail-cfgfile-constants
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-hooks
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-backup-patched-files
--disable-check-conflicts
--disable-check-contrib
--disable-check-eb-deps
--disable-check-github
--disable-check-style
--disable-consider-archived-easyconfigs
--disable-container-build-image
--disable-containerize
--disable-copy-ec
--disable-debug
--disable-debug-lmod
--disable-devel
--disable-dry-run
--disable-dry-run-short
--disable-dump-autopep8
--disable-dump-env-script
--disable-enforce-checksums
--disable-experimental
--disable-extended-dry-run
--disable-fetch
--disable-fix-deprecated-easyconfigs
--disable-force
--disable-group-writable-installdir
--disable-hidden
--disable-ignore-checksums
--disable-ignore-index
--disable-ignore-locks
--disable-ignore-osdeps
--disable-ignore-test-failure
--disable-info
--disable-insecure-download
--disable-install-github-token
--disable-install-latest-eb-release
--disable-job
--disable-last-log
--disable-list-toolchains
--disable-logtostdout
--disable-minimal-toolchains
--disable-missing-modules
--disable-module-depends-on
--disable-module-extensions
--disable-module-only
--disable-new-branch-github
--disable-new-pr
--disable-package
--disable-parallel-extensions-install
--disable-pretend
--disable-preview-pr
--disable-quiet
--disable-read-only-installdir
--disable-recursive-module-unload
--disable-regtest
--disable-remove-ghost-install-dirs
--disable-rpath
--disable-sanity-check-only
--disable-sequential
--disable-set-default-module
--disable-set-gid-bit
--disable-show-config
--disable-show-default-configfiles
--disable-show-default-moduleclasses
--disable-show-ec
--disable-show-full-config
--disable-show-system-info
--disable-skip
--disable-skip-extensions
--disable-skip-test-cases
--disable-skip-test-step
--disable-sticky-bit
--disable-terse
--disable-try-ignore-versionsuffixes
--disable-try-update-deps
--disable-unit-testing-mode
--disable-update-modules-tool-cache
--disable-use-existing-modules
--disable-verify-easyconfig-filenames
--env-for-shebang='/usr/bin/env'
--envvars-user-modules='HOME'
--extended-dry-run-ignore-errors
--filter-rpath-sanity-libs='libcuda.so,libcuda.so.1,libnvidia-ml.so,libnvidia-ml.so.1'
--fixed-installdir-naming-scheme
--from-pr='17604'
--generate-devel-module
--git-working-dirs-path='/user/brussel/101/vsc10122/src/EB'
--github-user='lexming'
--ignore-dirs='.git,.svn'
--include-easyblocks-from-pr=''
--include-easyblocks=''
--include-module-naming-schemes=''
--include-toolchains=''
--index-max-age='604800'
--installpath='/user/brussel/101/vsc10122/easybuild/install/zen2'
--job-backend='GC3Pie'
--job-eb-cmd='eb'
--job-max-jobs='0'
--job-max-walltime='24'
--job-output-dir='/theia/scratch/brussel/101/vsc10122/easybuild/easybuild-easyconfigs/easybuild/easyconfigs'
--job-polling-interval='30.0'
--lib-lib64-symlink
--lib64-fallback-sanity-check
--lib64-lib-symlink
--local-var-naming-check='warn'
--logfile-format='easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'
--map-toolchains
--max-fail-ratio-adjust-permissions='0.5'
--minimal-build-env='CC:gcc,CXX:g++'
--module-naming-scheme='EasyBuildMNS'
--module-syntax='Lua'
--moduleclasses='base,ai,astro,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,quantum,phys,system,toolchain,tools,vis'
--modules-tool-version-check
--modules-tool='Lmod'
--mpi-tests
--output-format='txt'
--output-style='auto'
--package-naming-scheme='EasyBuildPNS'
--package-release='1'
--package-tool-options=''
--package-tool='fpm'
--package-type='rpm'
--packagepath='/user/brussel/101/vsc10122/easybuild/install/zen2/packages'
--parallel='8'
--pr-target-account='easybuilders'
--pr-target-branch='develop'
--pre-create-installdir
--prefix='/user/brussel/101/vsc10122/easybuild/install/zen2'
--rebuild
--repository='FileRepository'
--repositorypath='/user/brussel/101/vsc10122/easybuild/install/zen2/ebfiles_repo'
--robot-paths='/user/brussel/101/vsc10122/src/easybuild-easyconfigs/easybuild/easyconfigs:'
--robot='/user/brussel/101/vsc10122/src/easybuild-easyconfigs/easybuild/easyconfigs:/theia/scratch/brussel/101/vsc10122/easybuild/easybuild-easyconfigs/easybuild/easyconfigs'
--show-progress-bar
--silence-deprecation-warnings=''
--sourcepath='/user/brussel/101/vsc10122/easybuild/install/zen2/sources'
--strict='warn'
--subdir-modules='modules'
--subdir-software='software'
--suffix-modules-path='all'
--tmp-logdir='/user/brussel/101/vsc10122/easybuild/install/zen2/log'
--tmpdir='/tmp'
--trace
--upload-test-report
--use-ccache='False'
--use-f90cache='False'
--wait-on-lock-interval='60'
--wait-on-lock-limit='0'

System info

• core count: 8
• cpu arch: x86_64
• cpu arch name: zen2
• cpu model: AMD EPYC 7282 16-Core Processor
• cpu speed: 2794.697
• cpu vendor: AMD
• gcc version: Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper; Target: x86_64-redhat-linux; Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux; Thread model: posix; gcc version 4.8.5 20150623 (Red Hat 4.8.5-44) (GCC) ;
• glibc version: 2.17
• hostname: node402.hydra.os
• os name: CentOS Linux
• os type: Linux
• os version: 7.9.2009
• platform name: x86_64-unknown-linux
• python version: 3.6.8 (default, Nov 16 2020, 16:55:22) ; [GCC 4.8.5 20150623 (Red Hat 4.8.5-44)]
• system gcc path: /bin/gcc
• system python path: /user/brussel/101/vsc10122/.local/venv/eb/bin/python
• total memory: 257572

List of loaded modules

• (none)

Environment

BASH_FUNC_ml() = () {  eval "$($LMOD_DIR/ml_cmd "$@")"
}
BASH_FUNC_module() = () {  if [ -z "${LMOD_SH_DBG_ON+x}" ]; then
 case "$-" in 
 *v*x*)
 __lmod_sh_dbg='vx'
 ;;
 *v*)
 __lmod_sh_dbg='v'
 ;;
 *x*)
 __lmod_sh_dbg='x'
 ;;
 esac;
 fi;
 if [ -n "${__lmod_sh_dbg:-}" ]; then
 set +$__lmod_sh_dbg;
 echo "Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output" 1>&2;
 fi;
 eval "$($LMOD_CMD shell "$@")" && eval "$(${LMOD_SETTARG_CMD:-:} -s sh)";
 __lmod_my_status=$?;
 if [ -n "${__lmod_sh_dbg:-}" ]; then
 echo "Shell debugging restarted" 1>&2;
 set -$__lmod_sh_dbg;
 fi;
 unset __lmod_sh_dbg;
 return $__lmod_my_status
}
CUDA_DEVICE_ORDER = PCI_BUS_ID
CUDA_VISIBLE_DEVICES = 0
EASYBUILD_GITHUB_USER = lexming
EASYBUILD_GIT_WORKING_DIRS_PATH = /user/brussel/101/vsc10122/src/EB
EASYBUILD_PREFIX = /user/brussel/101/vsc10122/easybuild/install/zen2
EB_SCRIPT_PATH = /user/brussel/101/vsc10122/.local/venv/eb/bin/eb
EDITOR = nvim
ENVIRONMENT = BATCH
FANCYLOGGER_IGNORE_MPI4PY = 1
GTK_USE_PORTAL = 1
HISTCONTROL = ignoredups
HISTSIZE = 8000
HOME = /user/brussel/101/vsc10122
HOSTNAME = node402
INTEL_LICENSE_FILE = /apps/brussel/licenses/intel.lic
JOBCLI_IGNORE_SUBMITFILTER = 1
LANG = en_US.UTF-8
LC_ALL = en_US.UTF-8
LESSOPEN = ||/usr/bin/lesspipe.sh %s
LMOD_CMD = /usr/share/lmod/lmod/libexec/lmod
LMOD_DIR = /usr/share/lmod/lmod/libexec
LMOD_PKG = /usr/share/lmod/lmod
LMOD_ROOT = /usr/share/lmod
LMOD_SETTARG_FULL_SUPPORT = no
LMOD_SYSTEM_NAME = hydra-zen2-ib
LMOD_VERSION = 8.7.19
LOGNAME = vsc10122
LS_COLORS = 
MAIL = /var/spool/mail/vsc10122
MANPATH = :
MODULEPATH = /user/brussel/101/vsc10122/easybuild/install/zen2/modules/all:/apps/brussel/CO7/zen2-ib/modules/2022a/all:/apps/brussel/CO7/zen2-ib/modules/2021b/all:/apps/brussel/CO7/zen2-ib/modules/2021a/all:/apps/brussel/CO7/zen2-ib/modules/2020b/all:/apps/brussel/CO7/zen2-ib/modules/2020a/all::/etc/modulefiles/vsc
MODULESHOME = /usr/share/lmod/lmod
PATH = /user/brussel/101/vsc10122/.local/venv/eb/bin:/bin:/sbin
PBS_NODEFILE = /tmp/YEnZWBi8U2
PBS_QUEUE = ampere_gpu
PWD = /theia/scratch/brussel/101/vsc10122/easybuild/easybuild-easyconfigs/easybuild/easyconfigs
PYTHONOPTIMIZE = 1
SHELL = /bin/bash
SHLVL = 2
SLURMD_NODENAME = node402
SLURM_CLUSTERS = hydra
SLURM_CLUSTER_NAME = hydra
SLURM_CONF = /var/spool/slurm/slurmd/conf-cache/slurm.conf
SLURM_CPUS_ON_NODE = 8
SLURM_EXPORT_ENV = HOME,USER,TERM,PATH=/bin:/sbin
SLURM_GET_USER_ENV = 1
SLURM_GPUS = 1
SLURM_GPUS_ON_NODE = 1
SLURM_GTIDS = 0
SLURM_JOBID = 8130623
SLURM_JOB_ACCOUNT = bvo00005
SLURM_JOB_CPUS_PER_NODE = 8
SLURM_JOB_GID = 2510122
SLURM_JOB_GPUS = 1
SLURM_JOB_ID = 8130623
SLURM_JOB_NAME = EB-test-17604
SLURM_JOB_NODELIST = node402
SLURM_JOB_NUM_NODES = 1
SLURM_JOB_PARTITION = ampere_gpu
SLURM_JOB_QOS = normal
SLURM_JOB_UID = 2510122
SLURM_JOB_USER = vsc10122
SLURM_LOCALID = 0
SLURM_MEM_PER_NODE = 65536
SLURM_NNODES = 1
SLURM_NODEID = 0
SLURM_NODELIST = node402
SLURM_NODE_ALIASES = (null)
SLURM_NPROCS = 8
SLURM_NTASKS = 8
SLURM_PMIX_DIRECT_CONN = true
SLURM_PMIX_DIRECT_CONN_EARLY = true
SLURM_PMIX_DIRECT_CONN_UCX = true
SLURM_PRIO_PROCESS = 0
SLURM_PROCID = 0
SLURM_SUBMIT_DIR = /theia/scratch/brussel/101/vsc10122/easybuild/easybuild-easyconfigs/easybuild/easyconfigs
SLURM_SUBMIT_HOST = login2.cerberus.os
SLURM_TASKS_PER_NODE = 8
SLURM_TASK_PID = 2057
SLURM_TOPOLOGY_ADDR = others.node402
SLURM_TOPOLOGY_ADDR_PATTERN = switch.node
SLURM_WORKING_CLUSTER = hydra:master02.hydra.os:6817:9472:109
STARSHIP_SESSION_KEY = 1660020277199228
STARSHIP_SHELL = bash
TERM = xterm-256color
TMPDIR = /tmp
UCX_TLS = dc,cuda,sm,self
USER = vsc10122
VIRTUAL_ENV = /user/brussel/101/vsc10122/.local/venv/eb
VISUAL = nvim
VSCPROFILELOADED = 1
VSC_ARCH_LOCAL = zen2
VSC_ARCH_SUFFIX = -ib
VSC_DATA = /data/brussel/101/vsc10122
VSC_DATA_VO = /data/brussel/vo/000/bvo00005
VSC_DATA_VO_BRUSSEL = /data/brussel/vo/000/bvo00005
VSC_DATA_VO_USER = /data/brussel/vo/000/bvo00005/vsc10122
VSC_DATA_VO_USER_BRUSSEL = /data/brussel/vo/000/bvo00005/vsc10122
VSC_DEFAULT_CLUSTER_MODULE = hydra
VSC_HOME = /user/brussel/101/vsc10122
VSC_INSTITUTE = brussel
VSC_INSTITUTE_CLUSTER = hydra
VSC_INSTITUTE_LOCAL = brussel
VSC_OS_LOCAL = CO7
VSC_SCRATCH = /scratch/brussel/101/vsc10122
VSC_SCRATCH_CLUSTER = /local
VSC_SCRATCH_NODE = /local
VSC_SCRATCH_SITE = /scratch/brussel/101/vsc10122
VSC_SCRATCH_THEIA = /theia/scratch/brussel/101/vsc10122
VSC_SCRATCH_THEIA_VO = /theia/scratch/brussel/vo/000/bvo00005
VSC_SCRATCH_THEIA_VO_USER = /theia/scratch/brussel/vo/000/bvo00005/vsc10122
VSC_SCRATCH_VO = /scratch/brussel/vo/000/bvo00005
VSC_SCRATCH_VO_USER = /scratch/brussel/vo/000/bvo00005/vsc10122
VSC_VO = bvo00005
VSC_VO_BRUSSEL = bvo00005
WORKDIR = /scratch/brussel/101/vsc10122
XDG_RUNTIME_DIR = /run/user/2510122
XDG_SESSION_ID = c179967
_ = /user/brussel/101/vsc10122/.local/venv/eb/bin/python
_ModuleTable001_ = 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
_ModuleTable002_ = 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
_ModuleTable003_ = bW9kdWxlZmlsZXMvdnNjIiwKfQo=
_ModuleTable_Sz_ = 3
__LMOD_REF_COUNT_MODULEPATH = /user/brussel/101/vsc10122/easybuild/install/zen2/modules/all:1;/apps/brussel/CO7/zen2-ib/modules/2022a/all:1;/apps/brussel/CO7/zen2-ib/modules/2021b/all:1;/apps/brussel/CO7/zen2-ib/modules/2021a/all:1;/apps/brussel/CO7/zen2-ib/modules/2020b/all:1;/apps/brussel/CO7/zen2-ib/modules/2020a/all:1;/etc/modulefiles/vsc:1