Created
June 17, 2024 16:34
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(partial) EasyBuild log for failed build of /tmp/eb-pg4acmy6/files_pr19497/n/NCO/NCO-5.1.9-foss-2023a.eb (PR(s) #19497)
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| == 2024-06-17 18:34:03,184 easyblock.py:314 INFO This is EasyBuild 5.0.0.dev0-rd0ab8a1379d0dd96aca5cd43a621ff7e2af6407b (framework: 5.0.0.dev0-r9cc376cd3f446c610f4da5886167c81c3e6a52aa, easyblocks: 5.0.0.dev0-rd0ab8a1379d0dd96aca5cd43a621ff7e2af6407b) on host node600.hydra.os. | |
| == 2024-06-17 18:34:03,184 easyblock.py:320 INFO This is easyblock ConfigureMake from module easybuild.easyblocks.generic.configuremake (/theia/scratch/brussel/101/vsc10122/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/configuremake.py) | |
| == 2024-06-17 18:34:03,184 easyblock.py:1047 INFO Build dir set to /user/brussel/101/vsc10122/easybuild/install/zen4/build/NCO/5.1.9/foss-2023a | |
| == 2024-06-17 18:34:03,184 easyblock.py:1104 INFO Software install dir set to /user/brussel/101/vsc10122/easybuild/install/zen4/software/NCO/5.1.9-foss-2023a | |
| == 2024-06-17 18:34:03,184 easyblock.py:1109 INFO Module install dir set to /user/brussel/101/vsc10122/easybuild/install/zen4/modules/all | |
| == 2024-06-17 18:34:03,184 easyblock.py:289 INFO Init completed for application name NCO version 5.1.9 | |
| == 2024-06-17 18:34:03,184 easyblock.py:4261 INFO Obtained application instance of for NCO (easyblock: ConfigureMake) | |
| == 2024-06-17 18:34:03,185 easyconfig.py:1683 INFO Generating template values... | |
| == 2024-06-17 18:34:03,185 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-06-17 18:34:03,185 mpi.py:298 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-06-17 18:34:03,185 easyconfig.py:1702 INFO Template values: arch='x86_64', bitbucket_account='nco', github_account='nco', module_name='NCO/5.1.9-foss-2023a', mpi_cmd_prefix='mpirun -n 1', name='NCO', nameletter='N', nameletterlower='n', namelower='nco', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='5.1.9', version_major='5', version_major_minor='5.1', version_minor='1', versionprefix='', versionsuffix='' | |
| == 2024-06-17 18:34:03,185 one.py:179 INFO Skipping reformatting value for parameter 'toolchain' | |
| == 2024-06-17 18:34:03,186 filetools.py:1913 INFO Creating directory /user/brussel/101/vsc10122/easybuild/install/zen4/log/reprod_20240617183403_869642 (parents: True, set_gid: False, sticky: False) | |
| == 2024-06-17 18:34:03,187 easyblock.py:4504 INFO Dumped easyconfig instance to /user/brussel/101/vsc10122/easybuild/install/zen4/log/reprod_20240617183403_869642/NCO-5.1.9-foss-2023a.eb | |
| == 2024-06-17 18:34:03,188 filetools.py:1913 INFO Creating directory /user/brussel/101/vsc10122/easybuild/install/zen4/log/reprod_20240617183403_869642/easyblocks (parents: True, set_gid: False, sticky: False) | |
| == 2024-06-17 18:34:03,189 filetools.py:2389 INFO /theia/scratch/brussel/101/vsc10122/easybuild/easybuild-easyblocks/easybuild/easyblocks/generic/configuremake.py copied to /user/brussel/101/vsc10122/easybuild/install/zen4/log/reprod_20240617183403_869642/easyblocks/configuremake.py | |
| == 2024-06-17 18:34:03,189 easyblock.py:4484 INFO Dumped easyblock configuremake.py required for reproduction to /user/brussel/101/vsc10122/easybuild/install/zen4/log/reprod_20240617183403_869642/easyblocks | |
| == 2024-06-17 18:34:03,189 easyblock.py:2238 INFO Number of iterations to perform for central part of installation procedure: 1 | |
| == 2024-06-17 18:34:03,189 build_log.py:272 INFO building and installing NCO/5.1.9-foss-2023a... | |
| == 2024-06-17 18:34:03,189 filetools.py:1996 INFO Lock /user/brussel/101/vsc10122/easybuild/install/zen4/software/.locks/_user_brussel_101_vsc10122_easybuild_install_zen4_software_NCO_5.1.9-foss-2023a.lock does not exist | |
| == 2024-06-17 18:34:03,190 filetools.py:1953 INFO Creating lock at /user/brussel/101/vsc10122/easybuild/install/zen4/software/.locks/_user_brussel_101_vsc10122_easybuild_install_zen4_software_NCO_5.1.9-foss-2023a.lock... | |
| == 2024-06-17 18:34:03,190 filetools.py:1913 INFO Creating directory /user/brussel/101/vsc10122/easybuild/install/zen4/software/.locks/_user_brussel_101_vsc10122_easybuild_install_zen4_software_NCO_5.1.9-foss-2023a.lock (parents: True, set_gid: False, sticky: False) | |
| == 2024-06-17 18:34:03,190 filetools.py:1962 INFO Lock created: /user/brussel/101/vsc10122/easybuild/install/zen4/software/.locks/_user_brussel_101_vsc10122_easybuild_install_zen4_software_NCO_5.1.9-foss-2023a.lock | |
| == 2024-06-17 18:34:03,190 build_log.py:272 INFO fetching files... | |
| == 2024-06-17 18:34:03,190 easyblock.py:3979 INFO Starting fetch step | |
| == 2024-06-17 18:34:03,190 easyconfig.py:1683 INFO Generating template values... | |
| == 2024-06-17 18:34:03,191 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-06-17 18:34:03,191 mpi.py:298 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-06-17 18:34:03,191 easyconfig.py:1702 INFO Template values: arch='x86_64', bitbucket_account='nco', builddir='/user/brussel/101/vsc10122/easybuild/install/zen4/build/NCO/5.1.9/foss-2023a', github_account='nco', installdir='/user/brussel/101/vsc10122/easybuild/install/zen4/software/NCO/5.1.9-foss-2023a', module_name='NCO/5.1.9-foss-2023a', mpi_cmd_prefix='mpirun -n 1', name='NCO', nameletter='N', nameletterlower='n', namelower='nco', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='5.1.9', version_major='5', version_major_minor='5.1', version_minor='1', versionprefix='', versionsuffix='' | |
| == 2024-06-17 18:34:03,191 easyblock.py:3987 INFO Running method fetch_step part of step fetch | |
| == 2024-06-17 18:34:03,191 easyblock.py:2360 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2024-06-17 18:34:03,191 easyblock.py:800 INFO Considering directory in which easyconfig file is located when searching for 5.1.9.tar.gz: /tmp/eb-pg4acmy6/files_pr19497/n/NCO | |
| == 2024-06-17 18:34:03,191 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /user/brussel/101/vsc10122/.local/venv/eb/bin/eb | |
| == 2024-06-17 18:34:03,191 tools.py:289 INFO Not considering /user/brussel/101/vsc10122/.local/venv/eb (no easybuild/easyconfigs subdir found) | |
| == 2024-06-17 18:34:03,192 tools.py:297 INFO Also considering installation prefix /rhea/scratch/brussel/101/vsc10122/python-venv/eb (via resolved path to 'eb')... | |
| == 2024-06-17 18:34:03,198 filetools.py:1913 INFO Creating directory /user/brussel/101/vsc10122/easybuild/install/zen4/sources/n/NCO (parents: True, set_gid: False, sticky: False) | |
| == 2024-06-17 18:34:03,788 filetools.py:818 INFO File size for https://github.com/nco/nco/archive/5.1.9.tar.gz: None | |
| == 2024-06-17 18:34:04,929 filetools.py:825 INFO Downloaded file 5.1.9.tar.gz from url https://github.com/nco/nco/archive/5.1.9.tar.gz to /user/brussel/101/vsc10122/easybuild/install/zen4/sources/n/NCO/5.1.9.tar.gz | |
| == 2024-06-17 18:34:04,929 filetools.py:857 INFO Successful download of file 5.1.9.tar.gz from url https://github.com/nco/nco/archive/5.1.9.tar.gz to path /user/brussel/101/vsc10122/easybuild/install/zen4/sources/n/NCO/5.1.9.tar.gz | |
| == 2024-06-17 18:34:04,929 easyblock.py:941 INFO Successfully downloaded source file 5.1.9.tar.gz from https://github.com/nco/nco/archive/5.1.9.tar.gz | |
| == 2024-06-17 18:34:04,929 easyblock.py:497 INFO Added sources: [{'name': '5.1.9.tar.gz', 'path': '/user/brussel/101/vsc10122/easybuild/install/zen4/sources/n/NCO/5.1.9.tar.gz', 'cmd': None, 'checksum': '9cd90345c1e3860a690b53fd6c08b721d631a646d169431927884c99841c34e9', 'finalpath': '/user/brussel/101/vsc10122/easybuild/install/zen4/build/NCO/5.1.9/foss-2023a'}] | |
| == 2024-06-17 18:34:04,929 easyblock.py:2403 INFO no patches provided | |
| == 2024-06-17 18:34:04,935 easyblock.py:2412 INFO sha256 checksum for /user/brussel/101/vsc10122/easybuild/install/zen4/sources/n/NCO/5.1.9.tar.gz: 9cd90345c1e3860a690b53fd6c08b721d631a646d169431927884c99841c34e9 | |
| == 2024-06-17 18:34:04,935 easyblock.py:2447 INFO Checking dirs that need to be created: ['/user/brussel/101/vsc10122/easybuild/install/zen4/software/NCO/5.1.9-foss-2023a', '/user/brussel/101/vsc10122/easybuild/install/zen4/modules/all/NCO', '/user/brussel/101/vsc10122/easybuild/install/zen4/modules/tools/NCO'] | |
| == 2024-06-17 18:34:04,935 filetools.py:1913 INFO Creating directory /user/brussel/101/vsc10122/easybuild/install/zen4/software/NCO/5.1.9-foss-2023a (parents: True, set_gid: False, sticky: False) | |
| == 2024-06-17 18:34:04,936 filetools.py:1913 INFO Creating directory /user/brussel/101/vsc10122/easybuild/install/zen4/modules/all/NCO (parents: True, set_gid: False, sticky: False) | |
| == 2024-06-17 18:34:04,936 filetools.py:1913 INFO Creating directory /user/brussel/101/vsc10122/easybuild/install/zen4/modules/tools/NCO (parents: True, set_gid: False, sticky: False) | |
| == 2024-06-17 18:34:04,939 configuremake.py:96 INFO config.guess version: 2023-08-22 (last updated: 2024-06-17T18:08:13.801038, SHA256 checksum: ec2577614252326f889df1de97b9a457c03a9a94811048563c211a44496d8ba3) | |
| == 2024-06-17 18:34:04,939 configuremake.py:151 INFO Found config.guess at /user/brussel/101/vsc10122/easybuild/install/zen4/sources/generic/eb_v5.0.0.dev0/ConfigureMake/config.guess | |
| == 2024-06-17 18:34:04,939 build_log.py:272 INFO ... (took 1 secs) | |
| == 2024-06-17 18:34:04,939 build_log.py:272 INFO creating build dir, resetting environment... | |
| == 2024-06-17 18:34:04,939 easyblock.py:3979 INFO Starting ready step | |
| == 2024-06-17 18:34:04,939 easyconfig.py:1683 INFO Generating template values... | |
| == 2024-06-17 18:34:04,940 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-06-17 18:34:04,940 mpi.py:298 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-06-17 18:34:04,940 easyconfig.py:1702 INFO Template values: arch='x86_64', bitbucket_account='nco', builddir='/user/brussel/101/vsc10122/easybuild/install/zen4/build/NCO/5.1.9/foss-2023a', github_account='nco', installdir='/user/brussel/101/vsc10122/easybuild/install/zen4/software/NCO/5.1.9-foss-2023a', module_name='NCO/5.1.9-foss-2023a', mpi_cmd_prefix='mpirun -n 1', name='NCO', nameletter='N', nameletterlower='n', namelower='nco', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='5.1.9', version_major='5', version_major_minor='5.1', version_minor='1', versionprefix='', versionsuffix='' | |
| == 2024-06-17 18:34:04,940 easyblock.py:3987 INFO Running method check_readiness_step part of step ready | |
| == 2024-06-17 18:34:04,940 easyblock.py:2257 INFO Setting parallelism: 4 | |
| == 2024-06-17 18:34:04,940 run.py:331 INFO Auto-enabling streaming output of '/usr/share/lmod/lmod/libexec/lmod python --terse list' command because logging to stdout is enabled | |
| == 2024-06-17 18:34:04,940 run.py:398 INFO Running shell command '/usr/share/lmod/lmod/libexec/lmod python --terse list' in /rhea/scratch/brussel/101/vsc10122/easybuild/easybuild-easyconfigs/easybuild/easyconfigs | |
| == 2024-06-17 18:34:05,071 run.py:498 INFO Output of '/usr/share/lmod/lmod/libexec/lmod ...' shell command (stdout only): | |
| import os | |
| os.environ["MODULEPATH"] = "/user/brussel/101/vsc10122/easybuild/install/zen4/modules/all:/apps/brussel/RL8/zen4/modules/2024a/all:/apps/brussel/RL8/zen4/modules/2023a/all:/apps/brussel/RL8/zen4/modules/2022a/all:/etc/modulefiles/vsc"; | |
| os.environ["_ModuleTable001_"] = "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"; | |
| os.environ["_ModuleTable002_"] = "ci9icnVzc2VsLzEwMS92c2MxMDEyMi9lYXN5YnVpbGQvaW5zdGFsbC96ZW40L21vZHVsZXMvYWxsOi9hcHBzL2JydXNzZWwvUkw4L3plbjQvbW9kdWxlcy8yMDI0YS9hbGw6L2FwcHMvYnJ1c3NlbC9STDgvemVuNC9tb2R1bGVzLzIwMjNhL2FsbDovYXBwcy9icnVzc2VsL1JMOC96ZW40L21vZHVsZXMvMjAyMmEvYWxsOi9ldGMvbW9kdWxlZmlsZXMvdnNjIiwKfQo="; | |
| os.environ["_ModuleTable_Sz_"] = "2"; | |
| _mlstatus = True | |
| == 2024-06-17 18:34:05,071 run.py:499 INFO Warnings and errors of '/usr/share/lmod/lmod/libexec/lmod ...' shell command (stderr only): | |
| No modules loaded | |
| == 2024-06-17 18:34:05,072 run.py:504 INFO Shell command completed successfully (see output above): /usr/share/lmod/lmod/libexec/lmod python --terse list | |
| == 2024-06-17 18:34:05,072 easyblock.py:3987 INFO Running method make_builddir part of step ready | |
| == 2024-06-17 18:34:05,073 filetools.py:1913 INFO Creating directory /user/brussel/101/vsc10122/easybuild/install/zen4/build/NCO/5.1.9/foss-2023a (parents: True, set_gid: False, sticky: False) | |
| == 2024-06-17 18:34:05,074 easyblock.py:3987 INFO Running method reset_env part of step ready | |
| == 2024-06-17 18:34:05,074 easyblock.py:3987 INFO Running method handle_iterate_opts part of step ready | |
| == 2024-06-17 18:34:05,075 easyconfig.py:1683 INFO Generating template values... | |
| == 2024-06-17 18:34:05,075 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-06-17 18:34:05,075 mpi.py:298 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-06-17 18:34:05,075 easyconfig.py:1702 INFO Template values: arch='x86_64', bitbucket_account='nco', builddir='/user/brussel/101/vsc10122/easybuild/install/zen4/build/NCO/5.1.9/foss-2023a', github_account='nco', installdir='/user/brussel/101/vsc10122/easybuild/install/zen4/software/NCO/5.1.9-foss-2023a', module_name='NCO/5.1.9-foss-2023a', mpi_cmd_prefix='mpirun -n 1', name='NCO', nameletter='N', nameletterlower='n', namelower='nco', parallel='4', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='5.1.9', version_major='5', version_major_minor='5.1', version_minor='1', versionprefix='', versionsuffix='' | |
| == 2024-06-17 18:34:05,075 build_log.py:272 INFO ... (took < 1 sec) | |
| == 2024-06-17 18:34:05,075 build_log.py:272 INFO unpacking... | |
| == 2024-06-17 18:34:05,075 easyblock.py:3979 INFO Starting source step | |
| == 2024-06-17 18:34:05,075 easyconfig.py:1683 INFO Generating template values... | |
| == 2024-06-17 18:34:05,076 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-06-17 18:34:05,076 mpi.py:298 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-06-17 18:34:05,076 easyconfig.py:1702 INFO Template values: arch='x86_64', bitbucket_account='nco', builddir='/user/brussel/101/vsc10122/easybuild/install/zen4/build/NCO/5.1.9/foss-2023a', github_account='nco', installdir='/user/brussel/101/vsc10122/easybuild/install/zen4/software/NCO/5.1.9-foss-2023a', module_name='NCO/5.1.9-foss-2023a', mpi_cmd_prefix='mpirun -n 1', name='NCO', nameletter='N', nameletterlower='n', namelower='nco', parallel='4', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='5.1.9', version_major='5', version_major_minor='5.1', version_minor='1', versionprefix='', versionsuffix='' | |
| == 2024-06-17 18:34:05,076 easyblock.py:3987 INFO Running method checksum_step part of step source | |
| == 2024-06-17 18:34:05,081 easyblock.py:2465 INFO Checksum verification for /user/brussel/101/vsc10122/easybuild/install/zen4/sources/n/NCO/5.1.9.tar.gz using 9cd90345c1e3860a690b53fd6c08b721d631a646d169431927884c99841c34e9 passed. | |
| == 2024-06-17 18:34:05,081 easyblock.py:3987 INFO Running method extract_step part of step source | |
| == 2024-06-17 18:34:05,081 easyblock.py:2577 INFO Unpacking source 5.1.9.tar.gz | |
| == 2024-06-17 18:34:05,081 run.py:331 INFO Auto-enabling streaming output of 'tar xzf /user/brussel/101/vsc10122/easybuild/install/zen4/sources/n/NCO/5.1.9.tar.gz' command because logging to stdout is enabled | |
| == 2024-06-17 18:34:05,081 run.py:341 INFO run_shell_cmd: Output of "tar xzf /user/brussel/101/vsc10122/easybuild/install/zen4/sources/n/NCO/5.1.9.tar.gz" will be logged to /tmp/eb-pg4acmy6/run-shell-cmd-output/tar-3sn8eoi_/out.txt | |
| == 2024-06-17 18:34:05,082 run.py:376 INFO Path to bash that will be used to run shell commands: /bin/bash | |
| == 2024-06-17 18:34:05,082 run.py:398 INFO Running shell command 'tar xzf /user/brussel/101/vsc10122/easybuild/install/zen4/sources/n/NCO/5.1.9.tar.gz' in /rhea/scratch/brussel/vo/000/bvo00005/vsc10122/easybuild/install/zen4/build/NCO/5.1.9/foss-2023a | |
| == 2024-06-17 18:34:05,473 run.py:501 INFO Output of 'tar ...' shell command (stdout + stderr): | |
| == 2024-06-17 18:34:05,474 run.py:504 INFO Shell command completed successfully (see output above): tar xzf /user/brussel/101/vsc10122/easybuild/install/zen4/sources/n/NCO/5.1.9.tar.gz | |
| == 2024-06-17 18:34:05,474 build_log.py:272 INFO ... (took < 1 sec) | |
| == 2024-06-17 18:34:05,474 build_log.py:272 INFO patching... | |
| == 2024-06-17 18:34:05,474 easyblock.py:3979 INFO Starting patch step | |
| == 2024-06-17 18:34:05,475 easyconfig.py:1683 INFO Generating template values... | |
| == 2024-06-17 18:34:05,475 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-06-17 18:34:05,475 mpi.py:298 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-06-17 18:34:05,475 easyconfig.py:1702 INFO Template values: arch='x86_64', bitbucket_account='nco', builddir='/user/brussel/101/vsc10122/easybuild/install/zen4/build/NCO/5.1.9/foss-2023a', github_account='nco', installdir='/user/brussel/101/vsc10122/easybuild/install/zen4/software/NCO/5.1.9-foss-2023a', module_name='NCO/5.1.9-foss-2023a', mpi_cmd_prefix='mpirun -n 1', name='NCO', nameletter='N', nameletterlower='n', namelower='nco', parallel='4', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='5.1.9', version_major='5', version_major_minor='5.1', version_minor='1', versionprefix='', versionsuffix='' | |
| == 2024-06-17 18:34:05,475 easyblock.py:3987 INFO Running method patch_step part of step patch | |
| == 2024-06-17 18:34:05,475 build_log.py:272 INFO ... (took < 1 sec) | |
| == 2024-06-17 18:34:05,475 build_log.py:272 INFO preparing... | |
| == 2024-06-17 18:34:05,475 easyblock.py:3979 INFO Starting prepare step | |
| == 2024-06-17 18:34:05,475 easyconfig.py:1683 INFO Generating template values... | |
| == 2024-06-17 18:34:05,476 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-06-17 18:34:05,476 mpi.py:298 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-06-17 18:34:05,476 easyconfig.py:1702 INFO Template values: arch='x86_64', bitbucket_account='nco', builddir='/user/brussel/101/vsc10122/easybuild/install/zen4/build/NCO/5.1.9/foss-2023a', github_account='nco', installdir='/user/brussel/101/vsc10122/easybuild/install/zen4/software/NCO/5.1.9-foss-2023a', module_name='NCO/5.1.9-foss-2023a', mpi_cmd_prefix='mpirun -n 1', name='NCO', nameletter='N', nameletterlower='n', namelower='nco', parallel='4', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='5.1.9', version_major='5', version_major_minor='5.1', version_minor='1', versionprefix='', versionsuffix='' | |
| == 2024-06-17 18:34:05,476 easyblock.py:3987 INFO Running method prepare_step part of step prepare | |
| == 2024-06-17 18:34:05,477 modules.py:611 INFO Checking whether Bison/3.8.2-GCCcore-12.3.0 exists... | |
| == 2024-06-17 18:34:05,477 modules.py:616 INFO Module Bison/3.8.2-GCCcore-12.3.0 exists (found in list of available modules) | |
| == 2024-06-17 18:34:05,477 modules.py:639 INFO Result for existence check of Bison/3.8.2-GCCcore-12.3.0 module: True | |
| == 2024-06-17 18:34:05,477 modules.py:611 INFO Checking whether flex/2.6.4-GCCcore-12.3.0 exists... | |
| == 2024-06-17 18:34:05,477 modules.py:616 INFO Module flex/2.6.4-GCCcore-12.3.0 exists (found in list of available modules) | |
| == 2024-06-17 18:34:05,477 modules.py:639 INFO Result for existence check of flex/2.6.4-GCCcore-12.3.0 module: True | |
| == 2024-06-17 18:34:05,477 modules.py:611 INFO Checking whether UDUNITS/2.2.28-GCCcore-12.3.0 exists... | |
| == 2024-06-17 18:34:05,477 modules.py:616 INFO Module UDUNITS/2.2.28-GCCcore-12.3.0 exists (found in list of available modules) | |
| == 2024-06-17 18:34:05,477 modules.py:639 INFO Result for existence check of UDUNITS/2.2.28-GCCcore-12.3.0 module: True | |
| == 2024-06-17 18:34:05,477 modules.py:611 INFO Checking whether expat/2.5.0-GCCcore-12.3.0 exists... | |
| == 2024-06-17 18:34:05,477 modules.py:616 INFO Module expat/2.5.0-GCCcore-12.3.0 exists (found in list of available modules) | |
| == 2024-06-17 18:34:05,477 modules.py:639 INFO Result for existence check of expat/2.5.0-GCCcore-12.3.0 module: True | |
| == 2024-06-17 18:34:05,477 modules.py:611 INFO Checking whether ANTLR/2.7.7-GCCcore-12.3.0-Java-11 exists... | |
| == 2024-06-17 18:34:05,477 modules.py:616 INFO Module ANTLR/2.7.7-GCCcore-12.3.0-Java-11 exists (found in list of available modules) | |
| == 2024-06-17 18:34:05,477 modules.py:639 INFO Result for existence check of ANTLR/2.7.7-GCCcore-12.3.0-Java-11 module: True | |
| == 2024-06-17 18:34:05,477 modules.py:611 INFO Checking whether libdap/3.20.11-GCCcore-12.3.0 exists... | |
| == 2024-06-17 18:34:05,478 modules.py:619 INFO Module libdap/3.20.11-GCCcore-12.3.0 not found in list of available modules, checking via 'module show'... | |
| == 2024-06-17 18:34:05,478 run.py:331 INFO Auto-enabling streaming output of '/usr/share/lmod/lmod/libexec/lmod python show libdap/3.20.11-GCCcore-12.3.0' command because logging to stdout is enabled | |
| == 2024-06-17 18:34:05,478 run.py:398 INFO Running shell command '/usr/share/lmod/lmod/libexec/lmod python show libdap/3.20.11-GCCcore-12.3.0' in /rhea/scratch/brussel/vo/000/bvo00005/vsc10122/easybuild/install/zen4/build/NCO/5.1.9/foss-2023a/nco-5.1.9 | |
| == 2024-06-17 18:34:08,882 run.py:498 INFO Output of '/usr/share/lmod/lmod/libexec/lmod ...' shell command (stdout only): | |
| import os | |
| os.environ["MODULEPATH"] = "/user/brussel/101/vsc10122/easybuild/install/zen4/modules/all:/apps/brussel/RL8/zen4/modules/2024a/all:/apps/brussel/RL8/zen4/modules/2023a/all:/apps/brussel/RL8/zen4/modules/2022a/all:/etc/modulefiles/vsc"; | |
| os.environ["_ModuleTable001_"] = "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"; | |
| os.environ["_ModuleTable002_"] = "ci9icnVzc2VsLzEwMS92c2MxMDEyMi9lYXN5YnVpbGQvaW5zdGFsbC96ZW40L21vZHVsZXMvYWxsOi9hcHBzL2JydXNzZWwvUkw4L3plbjQvbW9kdWxlcy8yMDI0YS9hbGw6L2FwcHMvYnJ1c3NlbC9STDgvemVuNC9tb2R1bGVzLzIwMjNhL2FsbDovYXBwcy9icnVzc2VsL1JMOC96ZW40L21vZHVsZXMvMjAyMmEvYWxsOi9ldGMvbW9kdWxlZmlsZXMvdnNjIiwKfQo="; | |
| os.environ["_ModuleTable_Sz_"] = "2"; | |
| _mlstatus = True | |
| == 2024-06-17 18:34:08,882 run.py:499 INFO Warnings and errors of '/usr/share/lmod/lmod/libexec/lmod ...' shell command (stderr only): | |
| == 2024-06-17 18:34:08,882 run.py:504 INFO Shell command completed successfully (see output above): /usr/share/lmod/lmod/libexec/lmod python show libdap/3.20.11-GCCcore-12.3.0 | |
| == 2024-06-17 18:34:08,882 modules.py:632 INFO Module libdap/3.20.11-GCCcore-12.3.0 not found via module avail/show, checking whether it is a wrapper | |
| == 2024-06-17 18:34:08,883 modules.py:639 INFO Result for existence check of libdap/3.20.11-GCCcore-12.3.0 module: False | |
| == 2024-06-17 18:34:08,883 modules.py:611 INFO Checking whether GSL/2.7-GCC-12.3.0 exists... | |
| == 2024-06-17 18:34:08,883 modules.py:616 INFO Module GSL/2.7-GCC-12.3.0 exists (found in list of available modules) | |
| == 2024-06-17 18:34:08,884 modules.py:639 INFO Result for existence check of GSL/2.7-GCC-12.3.0 module: True | |
| == 2024-06-17 18:34:08,884 modules.py:611 INFO Checking whether netCDF/4.9.2-gompi-2023a exists... | |
| == 2024-06-17 18:34:08,884 modules.py:616 INFO Module netCDF/4.9.2-gompi-2023a exists (found in list of available modules) | |
| == 2024-06-17 18:34:08,884 modules.py:639 INFO Result for existence check of netCDF/4.9.2-gompi-2023a module: True | |
| == 2024-06-17 18:34:08,884 modules.py:611 INFO Checking whether ESMF/8.6.0-foss-2023a exists... | |
| == 2024-06-17 18:34:08,884 modules.py:619 INFO Module ESMF/8.6.0-foss-2023a not found in list of available modules, checking via 'module show'... | |
| == 2024-06-17 18:34:08,884 run.py:331 INFO Auto-enabling streaming output of '/usr/share/lmod/lmod/libexec/lmod python show ESMF/8.6.0-foss-2023a' command because logging to stdout is enabled | |
| == 2024-06-17 18:34:08,884 run.py:398 INFO Running shell command '/usr/share/lmod/lmod/libexec/lmod python show ESMF/8.6.0-foss-2023a' in /rhea/scratch/brussel/vo/000/bvo00005/vsc10122/easybuild/install/zen4/build/NCO/5.1.9/foss-2023a/nco-5.1.9 | |
| == 2024-06-17 18:34:11,912 run.py:498 INFO Output of '/usr/share/lmod/lmod/libexec/lmod ...' shell command (stdout only): | |
| import os | |
| os.environ["MODULEPATH"] = "/user/brussel/101/vsc10122/easybuild/install/zen4/modules/all:/apps/brussel/RL8/zen4/modules/2024a/all:/apps/brussel/RL8/zen4/modules/2023a/all:/apps/brussel/RL8/zen4/modules/2022a/all:/etc/modulefiles/vsc"; | |
| os.environ["_ModuleTable001_"] = "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"; | |
| os.environ["_ModuleTable002_"] = "ci9icnVzc2VsLzEwMS92c2MxMDEyMi9lYXN5YnVpbGQvaW5zdGFsbC96ZW40L21vZHVsZXMvYWxsOi9hcHBzL2JydXNzZWwvUkw4L3plbjQvbW9kdWxlcy8yMDI0YS9hbGw6L2FwcHMvYnJ1c3NlbC9STDgvemVuNC9tb2R1bGVzLzIwMjNhL2FsbDovYXBwcy9icnVzc2VsL1JMOC96ZW40L21vZHVsZXMvMjAyMmEvYWxsOi9ldGMvbW9kdWxlZmlsZXMvdnNjIiwKfQo="; | |
| os.environ["_ModuleTable_Sz_"] = "2"; | |
| _mlstatus = True | |
| == 2024-06-17 18:34:11,912 run.py:499 INFO Warnings and errors of '/usr/share/lmod/lmod/libexec/lmod ...' shell command (stderr only): | |
| == 2024-06-17 18:34:11,912 run.py:504 INFO Shell command completed successfully (see output above): /usr/share/lmod/lmod/libexec/lmod python show ESMF/8.6.0-foss-2023a | |
| == 2024-06-17 18:34:11,913 modules.py:632 INFO Module ESMF/8.6.0-foss-2023a not found via module avail/show, checking whether it is a wrapper | |
| == 2024-06-17 18:34:11,914 modules.py:639 INFO Result for existence check of ESMF/8.6.0-foss-2023a module: False | |
| == 2024-06-17 18:34:11,973 build_log.py:176 ERROR EasyBuild encountered an error (at easybuild/easybuild-framework/easybuild/base/exceptions.py:126 in __init__): Missing modules for dependencies (use --robot?): libdap/3.20.11-GCCcore-12.3.0, ESMF/8.6.0-foss-2023a (at easybuild/easybuild-framework/easybuild/tools/toolchain/toolchain.py:553 in _check_dependencies) | |
| == 2024-06-17 18:34:11,974 build_log.py:272 INFO ... (took 6 secs) | |
| == 2024-06-17 18:34:11,974 filetools.py:2004 INFO Removing lock /user/brussel/101/vsc10122/easybuild/install/zen4/software/.locks/_user_brussel_101_vsc10122_easybuild_install_zen4_software_NCO_5.1.9-foss-2023a.lock... | |
| == 2024-06-17 18:34:11,974 filetools.py:384 INFO Path /user/brussel/101/vsc10122/easybuild/install/zen4/software/.locks/_user_brussel_101_vsc10122_easybuild_install_zen4_software_NCO_5.1.9-foss-2023a.lock successfully removed. | |
| == 2024-06-17 18:34:11,974 filetools.py:2008 INFO Lock removed: /user/brussel/101/vsc10122/easybuild/install/zen4/software/.locks/_user_brussel_101_vsc10122_easybuild_install_zen4_software_NCO_5.1.9-foss-2023a.lock | |
| == 2024-06-17 18:34:11,974 easyblock.py:329 INFO Closing log for application name NCO version 5.1.9 |
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