blasr from smrtanalysis 2.2.0 used to map channel_110_readv_9_template read from http://figshare.com/articles/A_P_aeruginosa_serotype_defining_single_read_from_our_first_Oxford_Nanopore_run/1052996 to Genbank entry AF498417

blasr_from_smrtanalysis_2.2.0_on_channel_110_read_9_template

$ blasr channel_110_read_9_template.fasta AF498417.fasta -m 0
    nMatch: 4151
 nMisMatch: 578
      nIns: 452
      nDel: 898
      %sim: 68.2843
     Score: -10537
         Query: channel_110_read_9_template
        Target: gi|20560066|gb|AF498417.1|
         Model: a hybrid of global/local non-affine alignment
     Raw score: -10537
        Map QV: 254
  Query strand: 0
 Target strand: 0
   QueryRange: 3 -> 5184 of 8476
  TargetRange: 9100 -> 14727 of 14734
    3  GGAAA---G-TGCTT-G-CAAGTCTTG-A-CCCCATGTTTC-C-AGA-C-
       |||||   | ||||| | *|||||||| | ***|||||||| | ||| |
 9100  GGAAAGTGGTTGCTTCGTGAAGTCTTGTATAGGCATGTTTCGCGAGAGCT

   41  GA-CGAGCAG--C--GGAGGGATTTTCCGTT-C-G--T-AG-TTGGCGT-
       *| *||||*|  |  |*||||*||||||||| | |  | *| ||||| |
 9150  CATAGAGCGGCCCAAGAAGGGGTTTTCCGTTCCTGTCTCCGATTGGC-TG

   79  CTCGGCGCCTATGAGACAGGGAACCTACCG-TGAAT-GCTGCTCCAT-A-
       ***||| |||*||| | |  | | *| **| ||||| ||||||**|| |
 9199  AGAGGC-CCTCTGA-A-A--G-A-GT-GGGCTGAATCGCTGCTTGATGAG

  125  -G-CG--TTGAGGCAAG-AGGTTA----G-TA--A--ATCCT-C-CCGGA
        | ||  ||*| ||||| ||||||    | ||  |  *|**| | |*|||
 9241  CGACGCCTTCA-GCAAGAAGGTTATTTGGATAGTAGGTTGATACGCAGGA

  159  --TGGATA--A-TA-ATGCCGCGGGGAGCCAGGA-CACTC---A-GCCTA
         |||| |  | *| *||  |||||*||*|*||| |||||   | ||||*
 9290  TCTGGA-ACGACCACTTG--GCGGGAAGGCGGGACCACTCAAGACGCCTC

  198  T-GAATGTT-TGGCCTGTTCCCA-CGTGGTTGGATCGGT-AAGA--AC--
       | ||*|||| |  |*||||||*| ||||||||||   || |*||  ||
 9337  TGGAGTGTTCT--CATGTTCCAAGCGTGGTTGGA---GTCATGACCACAG

  240  CAAAA-TTAT-C-CGT-ACTA-----CATGAGGCTTGT-GGCACGTGGC-
       *|||| |||| | ||| | ||     |*|||*|***|| ||| *|| ||
 9382  TAAAAGTTATCCACGTGA-TAGCCGGCCTGAAGAAAGTCGGC-GGT-GCT

  279  -AGCTAATGCTCAAGGCGGTTGGT-GAAGACTC--AATGGCGGACTTAG-
        ||||||||||||| |||||||*| | ||||||  |||||||| |  ||
 9429  GAGCTAATGCTCAA-GCGGTTGATCG-AGACTCAAAATGGCGG-C--AGT

  324  GAAGAGTTCCCATAC-TTCTAATTA-TTCATGTCT-TCTGGTGTATTGGT
       | | | || |*| || ||| *|||| ||||   || ||| | *|*|||||
 9474  G-A-A-TT-CGA-ACATTC-GATTATTTCA---CTGTCT-G-ATCTTGGT

  371  GAGTTTGGGCAAGATCTGATT---GCTAG--TA-CTGTTGGT-TGCTGTG
       |||||||||||*|*|||||||   |||*|  || ||||||*| |||| ||
 9513  GAGTTTGGGCAGGGTCTGATTGAGGCTGGTATATCTGTTGATGTGCT-TG

  414  GCGGTAT-A-AT-GATGAGGGAAATG---CGGCAT--TAACGTCGT-TGA
       ||   || | *| |||||||||*|||   ||| *|  | *|*|||| |||
 9562  GC---ATGACCTCGATGAGGGATATGCCTCGG-GTGCT-CCTTCGTCTGA

  455  TCTGGATATTTC-T-TTAGGAGG--CG-----GTCAAAAACATGGATGTA
       |*|||||||||| | **||||||  ||     ||| *|||||||||||||
 9607  TATGGATATTTCGTGAAAGGAGGCCCGATATAGTC-CAAACATGGATGTA

  496  --ATTCCGATCTTCTTGAT-CATTAG-TG-C-G-AT---C--AATTGGCA
         |||||||||||||||*| *|||*| || | | ||   |  *||||||
 9656  TCATTCCGATCTTCTTGGTGGATTGGCTGCCAGAATGGCCGGTATTGGC-

  534  GGG------TGGGGAGTCGCCCTGAACGTGGGTGA--GGC--GAGGGCAG
       |||      ||||||||   || |*||  |***||  **|  ||||||*|
 9705  GGGATTATATGGGGAGT---CC-GCAC--GACCGACCTTCAAGAGGGCGG

  574  C-AGAATACGACT-TTCTCTG-ACGGAAAATGT-T-ACTGGCTATCC--A
       | |||*||||||| |||| *| ||||||**||| | *||||||||||  |
 9749  CAAGAGTACGACTGTTCT-GGTACGGAAGGTGTGTGCCTGGCTATCCGGA

  617  TTCTT--C-AGATATATTG--T-C-CC-CC-AGG-CT--AGG-GCTACCG
       |||||  | |*||||||||  | | || || ||| ||  ||| |||  |
 9798  TTCTTGCCAAAATATATTGTTTGCGCCGCCGAGGCCTCAAGGCGCT--C-

  654  GCGCGA-TGCTGTCTAGGCT-C--GGCAAGCAGGATCCTCCTGGTC-GT-
       *|*| | |||||| | |||| |  *||||||||||   |*|||||| *|
 9845  ACAC-ATTGCTGT-T-GGCTACAACGCAAGCAGGA---TGCTGGTCATTC

  698  CCAACTCCGTTTGC-A-CTTA-TAGCCCTGC-GGC-ATGGAGCGCATC-G
       ||||  |*|||| | | ||*| |*| ||||| ||| |**|| || |*| |
 9889  CCAA--CGGTTT-CGATCTCACTCG-CCTGCAGGCGACCGA-CG-AACAG

  742  CGGT---CAATGAGGAATGGAGCTGGC--AGAGACGAGC-ATCAGT--TG
       ||||   |*||*||||*||||||||||  ||||*|*||| || | |  ||
 9933  CGGTCCGCTATCAGGAGTGGAGCTGGCATAGAGGCCAGCGAT-A-TCGTG

  784  AGTCCCAGTC--GGACGAGATTCTAGCAGAGGT-CGGGATC-TGCTTCC-
       |*|**|||||  || | ||||||*| | **||| **||||| |||||||
 9981  ATTGGCAGTCTAGG-C-AGATTCCA-C-CCGGTAAAGGATCATGCTTCCT

  829  -T-TC-CAGCT-TAGGTCTGCTGGAACT---CGTTATGC-CACTTGAAGT
        | || ||||| **||||||||||  ||   ||||||*| |*|||||||
10027  TTGTCGCAGCTGCCGGTCTGCTGG--CTCCACGTTATTCGCGCTTGAAG-

  871  TTTCTTTTGATCTCCAAC-GGAGCTGCTGTCAT-C-ATGCTGAAGTTGCA
       |||||||||  *|***|| ||||||||||||*| | |||||||| |||||
10074  TTTCTTTTG--GTGGGACGGGAGCTGCTGTCTTCCAATGCTGAA-TTGCA

  918  TAG----AT-GAGGC-ACCTCATATTAGGGGGAGCGCTTTAATCACTGCT
       **|    || ||*|| |||***|| |  |*||||||| ||*||| |||||
10121  GCGCCTCATCGAAGCTACCGGGTA-T--GCGGAGCGC-TTCATC-CTGCT

  962  TGGCAGA-CAGCAAGATCTA--TTGGTTGCT-TGGCAGCCCATGGATATC
       ||| ||| |*|||||||*||  ||*| || | ||**|| |||||||||||
10166  TGG-AGAGCGGCAAGATGTAGCTTCG-TG-TCTGAAAG-CCATGGATATC

 1008  TTCTGTCTGCGGTCTCGCAC-CAGGGATTCCCCAATG-TCTT--AG-AGC
       ||||||||||**|||||||| *||||||||||||||| ||||  *| |||
10212  TTCTGTCTGCATTCTCGCACGGAGGGATTCCCCAATGTTCTTGGTGAAGC

 1053  CAT-G-AATGGGATTGCCTTGTA-T-GCACTG--GT-TAGGATGC--ATT
       ||| | *|||||||||||||||| | *|||||  || **||||||  *||
10262  CATGGCCATGGGATTGCCTTGTATTACCACTGATGTGGGGGATGCGGCTT

 1094  ATTTGGCTCGGT------TG-GTCGTCGTTCGGGCGCGCTTTAGGGTCC-
       |||| |||*|||      *| ||||||||||   || ||*|| ||*|||
10312  ATTT-GCTAGGTAACGACGGTGTCGTCGTTC---CG-GCCTT-GGATCCG

 1136  AATGC-CTC--C-AAGGTAT-GTAGAAGTAC-CATTCCGTTGGAT-T---
       ||||| |||  | ||||||| | ||*| | | ||||*|||||||| |
10356  AATGCGCTCGGCAAAGGTATCG-AGGA-T-CTCATTGCGTTGGATGTCGA

 1176  GGGTCGTCGGGCACTTGTGGTAAGG-T-C-CGAC--AGGATTTA-TAACG
       |||||||||||||| | ||||*||| | | *|||  |||||||| |  ||
10403  GGGTCGTCGGGCAC-T-TGGTGAGGCTGCAAGACAGAGGATTTACT--CG

 1220  CAACTGC-CCAT--CCTAGTG---CTCAGCG-TTCATGAGTCT-CA--G-
        ||||*| |*||  || ||||   ||||||| ||||||||||| *|  |
10449  -AACTTCACGATGGCC-AGTGCCTCTCAGCGTTTCATGAGTCTGTATCGC

 1259  G----TCTGTGT-GTAAGAAAAGCTT-AC--GC-TGCAGGTTATGTTTAG
       |    ||| ||| **||||||||||| ||  || ||*||||||||||| |
10497  GACATTCT-TGTAAAAAGAAAAGCTTGACGAGCTTGAAGGTTATGTTT-G

 1300  CCT----C-CATC--GGAATTCGC-TGAAGCC-GTATTGTTGATG--A-T
         |    | ||||  |||*||*|| ||||||| ||||||||||||  | |
10545  --TAAAACGCATCGAGGAGTTTGCATGAAGCCGGTATTGTTGATGATAGT

 1338  -AAC--TCC-G--TTCTTCATGTCTCACCGTTTACCGGTC-CTGTCGGAG
        |||  *|| |  ||||||||||||||||||||||||||| |||||||||
10593  GAACGACCCGGCTTTCTTCATGTCTCACCGTTTACCGGTCGCTGTCGGAG

 1381  -CCAGCA-AC--G--TGCA-ATA-A-A-AACTA-AAGTACT-CT-A---A
        |||||| *|  |  |*|| *|| | | **|*| |*|**|| *| |   *
10643  CCCAGCAGGCTGGTTTCCAGGTACATATCGCCACACGCCCTGGTGACGCG

 1415  GTG-AAAAGATCGTCTCCTCCAGGTTTTCTGCACCTGATCTG-ATT-CCA
       ||| |||||||||||||| |*||||||||||||  |*|  || ||| |||
10693  GTGAAAAAGATCGTCTCC-CAAGGTTTTCTGCA--TCA--TGAATTGCCA

 1462  CTGTTCCCGCAGCCG-AAAAAT-C-ATTTCAAGTGGC-GTA--TGC-G--
       ||| |||*|*|||*| |||||| | *|||| || *|| |||  ||| |
10738  CTG-TCCAGAAGCGGAAAAAATCCTTTTTC-AG-AGCTGTATCTGCTGAC

 1503  -TATGTC--CCACC-TTT-TGGAGATTGC--AATAG-TG-TTTACACCTG
        ||||||  *|*|| ||| ||||||||||  **| | || ||||||||||
10785  TTATGTCTGGCGCCTTTTGTGGAGATTGCGGCCT-GATGTTTTACACCTG

 1544  GTTA--AGT-AAGCCGGTAGTAGTGC--TGG-AGTA-C-CC-TAAG-GTG
       ||||  | | |||||||||  | | |  ||| *||| | || *|*| *||
10834  GTTACCA-TCAAGCCGGTA--A-T-CTATGGCGGTATCGCCGCACGCTTG

 1584  GCGCCGGTGAAAGAGAATCGTGGCGGCCGTTT-CAGACGTGG-TTCG--T
       ||||||||| |||*|**||||||||||||||| |*|||*||| ||||  |
10879  GCGCCGGTG-AAGGGGGTCGTGGCGGCCGTTTCCGGACTTGGTTTCGTTT

 1630  TCATGAGGCGGAGGGTCTGAA-G-CT--GCG-TTCGGTTTACTGTGTCGC
       ||||  |||**|||||||||| | ||  ||| ||| | |**|||||||||
10928  TCAT--GGCCAAGGGTCTGAAGGCCTGCGCGTTTC-G-TGCCTGTGTCGC

 1675  CTGGCTTTATCGGCGACCGTT-GGAAAG-AAAAGTTGCGTGTCATCTTTC
       |||||||||||||||**|*|| ||*||| |||||||||||||||||||||
10974  CTGGCTTTATCGGCGGGCTTTGGGCAAGAAAAAGTTGCGTGTCATCTTTC

 1723  --AATCCGCGATCGTACGGCTGGTGTA-G-G-TAGTAATGGGTAGCTGAT
         ||||| |||| | |  *| || | | | | | |  || *|  ||  *|
11024  AAAATCC-CGAT-G-A--TC-GG-G-ACGCGCT-G--AT-CG--GC--CT

 1768  GGGTGGGACAAGGGCGTATAGCGGCCCTTTTG--AATTGCGTTCCTGATT
       ||||         ||| ||     |*||||||  ||*|*|| ||||||||
11058  GGGT---------GCG-AT-----CACTTTTGAAAAGTCCG-TCCTGATT

 1816  CGCGGTTCCCGTATAGTACTC-GATCTCAG----AGCCGGCTAGACAGG-
       ||||||||**|**|*| || | || |*|||    |||||||   *|*||
11092  CGCGGTTCGGGGGTCG-AC-CTGA-CGCAGTACCAGCCGGC---CCCGGA

 1860  -AG--CCGAAAACGCCATTATTAC-CTAGTCCCGGC-C--TTG--C--GG
        ||  ||| |||||||**|**| | | |*|**|||| |  |||  |  ||
11136  AAGCCCCG-AAACGCCGGTGGT-CAC-ATTGGCGGCTCGGTTGCTCAGGG

 1899  -C-GGGGTGTGCTGG-ATTCGTCGAAAGGCGGCAAATGA-GCTTA-G--G
        | *||||||||||| |||||||| || ||||||||| | *|||| |  |
11183  ACAAGGGTGTGCTGGAATTCGTCG-AA-GCGGCAAAT-ATCCTTAGGCAG

 1942  CGCATGC---CCGGCACA-TTTC--GTGGGATATGGGAGTCATGGGAGTA
       |||| ||   |||||||| ||||  *| ||   |*||||*|*| ||| |*
11230  CGCA-GCGTACCGGCACATTTTCAACT-GG---TCGGAGACCT-GGA-TC

 1986  GAGCGATGAAGCCGTC-CCATGGGTCGAGGCGTTGGCC-AACCAGA----
       **| |  ||| || *| ||| |**|||||*|| |  || |||*|||
11273  CTG-G--GAA-CC-CCACCA-GTATCGAGCCG-T--CCGAACTAGAGCGT

 2030  ----G-ATC-----CA--AT---GTG---TGAG---TCTCCAGGAGTAAC
           | |*|     ||  ||   |||   || |   ||*|||||| ||*|
11314  TGGCGTAGCGAGGGCACGATCGAGTGTCTTG-GTTATCGCCAGGA-TATC

 2059  -C--CCGTCTTCACCCGTTCCCAGCCT-G-CTTTCTTACTTCTTAT--TG
        |  |*||||||*|||||||*|| **| | |*||||**||||||||  ||
11362  GCGTCTGTCTTCGCCCGTTCGCA-TATAGTCGTTCTGCCTTCTTATCGTG

 2102  -A-GGCGT-C-GAGCGACGTGACTTC-ACGCGTCGGCTGGGTTCGGGCGT
        | |||*| | *|| |*|*||  *|| |*||||||||   ||*|||||||
11411  AAGGGCTTCCTAAG-GTCCTG--GTCGAGGCGTCGGC---GTGCGGGCGT

 2147  GCATTGGTCTTGGTAGACGATCTGA-G-A-GGGGGT-CTAGGATGCAACC
       ||   ||  || || ||||| |*|| | | *|||*| |**||||||||*|
11455  GC---GG--TT-GT-GACGA-CCGATGTACCGGGTTGCCGGGATGCAATC

 2193  CAGGCTGATGTTACGGGCCT--TAACGTG-CGGTTAGTCGTG-TTATGCT
       ||||||||||||||||||||  |  |||| ||| | | |||| ||*||||
11497  CAGGCTGATGTTACGGGCCTGCT--CGTGCCGG-T-G-CGTGATTCTGCT

 2239  GCTCTGGCGGATGCCATTCA-CGTCTGCTT-AGTCG-CGGA-TTGCGCAA
       |||||||||||||||||||| |||||**|| ||||| |*|| ||||||||
11542  GCTCTGGCGGATGCCATTCAGCGTCTTATTGAGTCGCCAGAGTTGCGCAA

 2285  GGAGCAATGGGGAGATGCT--G-AAGCGTTGGCAG-GTC--G--TTTGCA
       |*||  || |||||*||||  | *||||||||||| | |  |  |||||*
11592  GAAG--AT-GGGAGCTGCTGGGCGAGCGTTGGCAGAG-CGTGATTTTGCG

 2327  ATCCCATA-TATCGTCCAACA--ACC---A-ACTTCT-GGGCA-TAGGGA
       || |*|*| ||||||||||||  |||   | |*||*| ||||| ||||||
11638  AT-CGAAAGTATCGTCCAACAGCACCTGGATATTTATCGGGCACTAGGGA

 2368  GC---GCTTGA--CG-CA-AATGTAATTGAT-AC---AG-AAACGGATTC
       ||   ||||||  || || ||||| ||||*| ||   *| ||*||||||
11687  GCGGAGCTTGACGCGACATAATGT-ATTGGTAACGGGGGCAACCGGATT-

 2406  CAT-GAGTATCACGCTGGTTATTAAATAGTCTCTGTTCTTCCGGGCAATG
       ||| | |***|*||||||    |*|||||||||||||||||||||| | |
11735  CATCG-GGGCCGCGCTGG----TCAATAGTCTCTGTTCTTCCGGGC-A-G

 2455  ATA-AAGATTT-GACATTAGG-G-CG-C--A-A--TGGGGCCTGG-CACG
        || |||*||| |*|  **|| | || |  | |  |||||||||| |*||
11778  -TACAAGGTTTGGGC--CGGGTGCCGCCGAAGAGGTGGGGCCTGGCCTCG

 2494  ACCAAGAAT-C-CCCTTGCTTC---CTG-A-T-GGCAGTTCTGTTGTCTG
       |  **|**| | ||||||||||   *|| | | |||||||||||||||||
11825  A--GGGGTTACTCCCTTGCTTCTGGGTGAACTGGGCAGTTCTGTTGTCTG

 2536  GGATCCCGTA--CAACCGATACGGTGATGTGTTGTCGTGTGTCATTGC-C
       |||| *||*|  |**|| || |   |||**|  || | || ||||||| |
11873  GGAT-GCGGAGTCGGCC-AT-C---GATACG--GT-G-GT-TCATTGCGC

 2583  -GCCTTACAGTGTCATCGAATAACGACAGCGCGA-TGCTTAGGTA-AGGA
        ||| **| ||| ||| |  |*|*|  ||||*|| *||*|**| | **|
11912  TGCC-CGC-GTG-CAT-G--TCATG--AGCGAGACGGCCTCCG-ATCCG-

 2630  C-CGTCGAGGTCCCCAAAG-C-ACGTTC-GGGAGA-GCTTGAGTCTAGGA
       | |||||||*|||*|||*| | |||||| ||| || *||||| |||
11952  CTCGTCGAGTTCCGCAAGGCCAACGTTCAGGG-GACACTTGA-TCT----

 2675  GGTCCC-GG-GGAAG-A---GGGGGCG-GC-GCGTTCCTGTC-TTA--A-
       || ||| || ||**| |   *||||*| || |||||*| *|| |||  |
11996  GG-CCCGGGAGGCCGTATCCCGGGGAGTGCGGCGTTTC-ATCTTTATCAG

 2713  -TAGAT--AGGTC-ATCTG-GAGGG-AGTG-G-ACGGATTCGGGCC--T-
        |*|||  ||||| || *| ||||| |*|| | *|||  ||||*||  |
12044  CTCGATAAAGGTCAAT-GGCGAGGGAACTGAGCCCGG--TCGGCCCTATA

 2752  CTGC--ACCGTCTAGCCCCAATCATGTGCG-TACCTA-ACCG-TTCC-AT
       ||||  ||*||| *| |||||||*||| || |*|||| **|| |||| |*
12091  CTGCGGACAGTC-CG-CCCAATCCTGT-CGATCCCTATGGCGTTTCCAAA

 2796  CGGAAAGCGGAGC-AG-GCTATTGGAT-T--AAGAAGA-A-C-AACTGGA
       |||*||||||||| || |||||||||| |  **||||| | | *||||||
12138  CGGGAAGCGGAGCAAGCGCTATTGGATCTGGCGGAAGAGACCGGACTGGA

 2838  AG-T-TGA--AT--GAAC-ATTC-GGCTTTATGGTCCCCCA----TTATA
       *| | |||  ||  ||*| *|*| || ||||||||   |||    |*| |
12188  GGTTGTGATCATCCGACCGGTCCTGG-TTTATGGT---CCAGGGGTCA-A

 2876  GGCCAACGTACA-A-CAT-CTGCGCTGGCTGAAGGGCGAGGGGGCGGAC-
       |||||||||||| | ||| *||||||||||||||*||| |*|*|| **|
12233  GGCCAACGTACAGACCATGATGCGCTGGCTGAAGCGCG-GCGTGC-CCCT

 2922  GCGTGCTAAACACTA--CAGACCTAAATC--AGTAGTCTGGTGTCACTGG
       *|*| |||****|||  |  |  | ||||  *|||||||||||||*|| |
12281  CCCT-CTAGGGGCTATTC--A--T-AATCGGCGTAGTCTGGTGTCGCT-G

 2968  GACTATCTTCTTGTC-A-CTCATCA--ACCTGCATCGAGCATCCATCAAT
       || ||  *||||||| | |||||||  |||||||||||||||||**|  |
12324  GA-TA--ATCTTGTCGACCTCATCATCACCTGCATCGAGCATCCGGC--T

 3014  -CGGTCGGGCAAATTTTCTATAGTTAGC-AAAGT--GGA-ATTT----C-
        |||||||||||*||||| *|*||*||| |**||  ||| *|||    |
12369  GCGGTCGGGCAAGTTTTC-CTCGTAAGCGACGGTGAGGATCTTTCCACCA

 3054  GCGAGTGCTGCTGCGGAG-ATCGGATAGGGCCTTAGGGCACAATAGGCGC
       *|||||  |||||||||| ||*||| *|*||||| ||||*|  | **|||
12418  CCGAGT--TGCTGCGGAGAATGGGA-CGCGCCTT-GGGCGC--T-CCCGC

 3103  -GGCCAATGCTG-CTGTT-CCGCCAGTT--ACTTAGTTAAGGGCGGGGTA
        *|||  ||||| ||||| |||||||||  | |**||**|  ||||*| |
12461  TCGCC--TGCTGCCTGTTCCCGCCAGTTGGA-TCGGTGCA--GCGGCG-A

 3148  GAGCAGCGT-TGGACTAGGCAGGCATTTAG--C-CCGCCTGTTAGAC--C
        |  || *| ||*|| |||||||||||| |  | ||||||| | | |  |
12505  -A--AG-TTCTGAAC-AGGCAGGCATTT-GCTCGCCGCCTG-T-G-CGGC

 3192  TAATTGCAAGTC-A-AACCTGAAAA-CCGCC-AGTACTTGGCTGGAC-CG
       |*|||||||||| | |*|*|||||| ||||| |||*||||||||||| |
12546  TCATTGCAAGTCGATATCATGAAAACCCGCCAAGTGCTTGGCTGGACTC-

 3237  C-CCGGTA-GGGT--A-CAGGCA-T---GCAAA----CCGCTCTTTCCTG
       | |||||| ||||  | |||||| |   |*|||    |||||||||||||
12595  CGCCGGTAGGGGTGGACCAGGCATTGGAGAAAACCGCCCGCTCTTTCCTG

 3274  GATC-TCGATGATGAATCTATGGTTGTTTG-T-CAAGC-ATTG-CGAGTA
       |||| *|*|||||||||||||||||| ||| | |**|| *||| || *|
12645  GATCGCCAATGATGAATCTATGGTTG-TTGTTGCCGGCGGTTGCCG-CT-

 3319  ATTTTCGCTGCTGTCT--CCTAAG-CGTCTT-CCCCCTTCAACGAAATTT
        *||||*||||||| |  ||   | ||*||| |*||*||  |||**| ||
12692  -CTTTCCCTGCTGT-TGACC---GCCGGCTTGCGCCGTT--ACGCGA-TT

 3365  G-CCGCAGCTTGATCGA--T-CACAATGCCCCATG-TCT--CTAGGTGCC
       | |||||||||||||||  | |*||||||*|*|*| |||  |*|||||||
12734  GCCCGCAGCTTGATCGATGTACCCAATGCTCGAAGTTCTCACCAGGTGCC

 3408  --CTCC-----GGAGCATGTGGCGACT-T--TAAC-GTCCTTAAT-CTGG
         |*||     ||*|| *|||*|| || |  | *| *|||||**| ||||
12784  GACGCCTAGGGGGGGC-GGTGTCG-CTATCGT-GCTCTCCTTCCTGCTGG

 3446  CAGTGCTGCTTGCGGCAATATTGGGCTAAGTG-GA-TGGATC---CCACT
       ||||||||||||||||*|||||||||***||| *| *|||||   |||||
12831  CAGTGCTGCTTGCGGCGATATTGGGCGCGGTGAAACCGGATCTGGCCACT

 3491  -G-ATCACT-GGGGC-GG-ACTGTGGGATCGCATCTTGCTGGGCTTCCAC
        | ||| || ||||| || | | ||||||||||  |||||||||||||*|
12881  GGTATC-CTGGGGGCGGGTA-T-TGGGATCGCA--TTGCTGGGCTTCCTC

 3536  TA--ATC-TGGCCATATCCCTGCCCGTTGGCGTTTGCTCGGCGGCCATTT
       *|  ||| ||||||||||*|||||||||||||||||||   |||||| ||
12926  GACGATCATGGCCATATCGCTGCCCGTTGGCGTTTGCT---CGGCCA-TT

 3583  TAG-CGCTGCTTCCT-GATG-TGGTAC--G--TGGAGGGTTGCCTGCATT
       |*| ||*|||||*|| |*|| | ||||  |  ||||||*|||||||||||
12972  TCGCCGGTGCTTGCTGGCTGCT-GTACTGGCTTGGAGGTTTGCCTGCATT

 3626  GGCC--TTTC-GCCTTGTGGTCG---TGGGGT-AG-T-G-C-CATAGCTG
       ||||  |||| ||||||||||||   |||||| *| | | | ||||||||
13021  GGCCTTTTTCGGCCTTGTGGTCGATCTGGGGTGGGTTGGACACATAGCTG

 3665  C-CCGTTCTATCT-G---GGATCG-TAAATCTCT--AA-TTCAT---C--
       | *|||||||||| |   |||| | |*|||||||  || |||||   |
13071  CGGCGTTCTATCTGGTATGGAT-GCTCAATCTCTACAATTTCATGGACGG

 3701  TATCAATGGGATTGCCACCGTTGAGGC--------TGTGCGTTGGC-CTG
       ||||*||||||||||||*|||||||||        ||||||||||| |||
13120  TATCGATGGGATTGCCAGCGTTGAGGCTGTGTGTGTGTGCGTTGGCGCTG

 3742  -CGTG--GGT--TGGTCATATCCT-TAAGG-TCCGATGAGGCATCCGA-G
        |*||  *||  |||||| *|**| | ||| |||||||||||||||*| |
13170  CCCTGCTTGTCGTGGTCA-GTGGTGT-AGGTTCCGATGAGGCATCCCAGG

 3784  GCGTTTCTTGGCCTCGGCGGCGCT--TAGG-A-TAGAAGTGACGGGATTC
       |||  | ||||  |*|||||||||  | || | **|**||||||||*|||
13218  GCG--T-TTGG--TTGGCGGCGCTGCT-GGCAGCCGCGGTGACGGGGTTC

 3830  C-TTTCTGGAATATT-TCT-ATGC-TAGATCTTCAT-GGGGAT--TAGTA
       | |||||||||| || *|| *||| **||||||||| ||||||  |*|||
13262  CTTTTCTGGAAT-TTCCCTCCTGCGCGGATCTTCATGGGGGATGCTGGTA

 3873  --AG-TT-TTGGGATG-TA--A----TGCCCTTTCCCTGC-AGCCG-ATG
         *| || ||||| *| ||  |    ||*||||||||||| ||||| |||
13311  GCGGTTTCTTGGG-GGTTATCATTGGTGGCCTTTCCCTGCAAGCCGCATG

 3910  GCATTATCGCCGCAACTTTCCGTCTGGGGTCT-ACT-ATCCTGCT-CCGA
       |  *|*||||||||*|  | |*|||||||| | *|| |||||||| **|*
13360  G--GTCTCGCCGCAGC--T-CTTCTGGGGT-TGGCTCATCCTGCTGGGGG

 3957  TATTCGACT-TTGATGCCTA-CATGGCTCTTGTTGC-CC--TTGCTGCGG
       ||||| |*| |||||||| | |*||*| |||||||| ||  |||||||||
13404  TATTC-ATTGTTGATGCC-ACCCTGAC-CTTGTTGCGCCGGTTGCTGCGG

 4002  CTCGG-GA-AAGGGGTTATGAGGCATCATCGCAGTCACCCA-ACGA-TCT
          || || || ||*||||||||| *||||||||||||*|| ||*| |*|
13451  ---GGAGACAA-GGTTTATGAGGC-GCATCGCAGTCACGCATACCAGTAT

 4048  GCTTCTCGTCATTACGGGCG---TCGTCCTGTTACCTATCG-A-TCCGGA
       ||||||||||||||||||||   ||*|||||||||| *|*| | | *|||
13496  GCTTCTCGTCATTACGGGCGTCATCTTCCTGTTACC-CTGGCAGT-GGGA

 4093  GGCATCAACATCTTCTGGTTGTT-AAAC---CA-T--AT-T---A-AAAG
       ||||||||||||||||||||||| **||   || |  *| |   | ***|
13544  GGCATCAACATCTTCTGGTTGTTGCCACTGGCACTGCTTGTCGCAGCGGG

 4131  GAA-ATCGACGGGATCGATTGATTTTGTT-ATTGGCTACTTAACTCTGGC
       ||| ||||||||*|| |*||| *|||||| |||||||||*|**|||||||
13594  GAAGATCGACGGCAT-GCTTG-CTTTGTTGATTGGCTACCTGCCTCTGGC

 4179  GTTCCT-GAAAACCG-TTTAA-GCC-GAGTTATGGAATCGGA-GCACATG
       |||||| |****||| ||||| ||| ||||**|||||||  | ||*| ||
13642  GTTCCTGGCGCTCCGTTTTAAGGCCGGAGTCCTGGAATC--ACGCGC-TG

 4224  C---AATGTCCCGG-TCCCT-GAAGCACAAAGG-CGGATTTT-C-GGAAC
       |   |||||||||| |**|| ||*||*|  *|| | |||||| | |||||
13689  CTTGAATGTCCCGGTTGGCTGGAGGCGC--GGGAC-GATTTTCCGGGAAC

 4266  -T-TAGCTCTGAAAGGAATGTGCGA-CGATGATCAGTAATGGTAGTAACT
        | || *|*||||||||||||||*| ||||||||||| |  || |  |||
13736  GTATA-ATATGAAAGGAATGTGCAAGCGATGATCAGT-A--GT-G--ACT

 4313  A-TGCCGGA-CGCGTGA-TTCGATT-TAG-A--GTACTTGCC--ATC-AG
       | |||| || *|||||| ||*|*|| **| |  |||*|||||  |*| ||
13779  ACTGCC-GATAGCGTGATTTGGGTTCCGGAATGGTATTTGCCAGACCAAG

 4353  G-AATGGACTTG-CCAGA-TTGTTCGGGTGGATGCAGGTG-AGTGAA--G
       | ||||||| || ||*|| ||||||||||||||||*|||| ||||||  |
13828  GAAATGGAC-TGCCCGGACTTGTTCGGGTGGATGCGGGTGCAGTGAAGGG

 4397  AACTTACTGATGGGATGTTGG-TAAGGTATTGCGT-GACG-CTACCTGGA
       **||*|*|*||*||||||||| |||   *|||||| |||| || |||
13877  GGCTGATTAATAGGATGTTGGATAA---CTTGCGTGGACGCCT-CCT---

 4444  GGGGGATTGCCGCG-C-CC-GAA--GCATTCTTTGTC-GATTGCTTAGAC
         |||||||||||| | || |||  ||||||  | || |*||||   |||
13920  --GGGATTGCCGCGCCGCCAGAAGCGCATTC--T-TCAGGTTGC---GAC

 4488  GGGATATCAACCT-G-GT-GCGTTC----TGCCTGGCTTTTAACC--GT-
        |||*|||**||| | || ||*|||    ||*||||| |||  ||  ||
13962  -GGACATCGGCCTGGTGTGGCTTTCATTGTGGCTGGC-TTT--CCTGGTG

 4528  C-TCCTCGAGCAAGACACCGAAGACATGATCGATCCCGTTC--GGA-AAC
       | | |||  |   | ||||||||||||||||||| ||||||  ||| *||
14008  CGT-CTC--G---G-CACCGAAGACATGATCGAT-CCGTTCGGGGATCAC

 4574  CCCT-GAT-TTC-TAGCACCGCCTATAAACCGCCAT-CCG-ACTTCATCC
       *||| |*| ||| ||||**|||||*| ||||||||| ||| *||||||||
14050  GCCTGGCTGTTCATAGCGGCGCCTCT-AACCGCCATCCCGCTCTTCATCC

 4619  -ATTCGGCATGTACCGGGCGGTGAATGCTACCACCTAGCG-AACGA--CC
        *||||||||||||||||||||| |||| *|*|||| |*| |||||  ||
14099  GCTTCGGCATGTACCGGGCGGTG-ATGC-GCTACCT-GGGCAACGACGCC

 4665  GTGATGACGGCCAGATCGCC-A-GCGGTCA-CATTTCTAAGACT--TGCT
       *|*||  | | | ||||||| | ||*|||| ||||||***| ||  |*||
14146  CTTAT--C-G-C-GATCGCCAAGGCCGTCACCATTTCCGCG-CTGGTCCT

 4710  -TCG-TGCT-G--TACTGGTACC-CAT-CCC-TAATAAGTGAT-CCCCGT
        ||| |||| |  |||||||||| | | ||| ******|||*| ||||||
14190  GTCGTTGCTGGTCTACTGGTACCGC-TCCCCGCCGGCGGTGGTGCCCCGT

 4751  T-CCTGGTGTTCATC-ACTGGT-GTT-ACCATGCATGCCTGATC--C--A
       | |||||||||||*| |||||| ||| |*||||| || ||||||  |  *
14239  TCCCTGGTGTTCAACTACTGGTGGTTGAGCATGC-TG-CTGATCGGCGGC

 4793  TTGCG--TGGCACATGCGCC--TAATTCAT-CGAGACTGGTA--CTGCTG
       |||||  |||| ||||||||  ||*||||| *|*||||||||  ||||||
14287  TTGCGTCTGGC-CATGCGCCAGTATTTCATGGGCGACTGGTACTCTGCTG

 4836  TGCAGTTCGGTAGAGAATGATGGGTTTCTTTACCATCACGCGC-GGATGG
       ||||| |||||     |**|    ||||  |  ||*| ||| | ||||||
14336  TGCAG-TCGGT-----ACCA----TTTC--T--CAAC-CGC-CAGGATGG

 4885  -ATGCCCAGGGTGAATA-CTAT-GAG-GAGGAC-G--GGCAACCAGTTGG
        *|||||||||||**|| |||| |*| |*||*| |  |||||||||||||
14370  CCTGCCCAGGGTGGCTATCTATGGCGCGGGGGCGGCCGGCAACCAGTTGG

 4928  -TGCCGGCATTGCATTCTCATTC--GCGATGCGTCTAGT-CCGTTCAT--
        || ||||||||| *||||**||  ||||||||||**|| *|||||||
14420  TTG-CGGCATTGC-GTCTCGGTCGGGCGATGCGTCCGGTGGCGTTCATCG

 4972  ACCAT--C---C--A-CGGCAAGCTGATACAT---AAGTCTGC--G--TA
       |**||  |   |  | ||*|||*|*|*| |||   **||||||  |  ||
14468  ATGATGACAAGCAGATCGCCAACCGGGT-CATCGCCGGTCTGCGGGTCTA

 5007  TAGCCGCCAAGCATAT-CGCCA-ATGATC-A-G-GCTAC---CTAG-G-A
       || ||||||||||||| ||||| |||||| | | |  ||   |  | | |
14517  TA-CCGCCAAGCATATCCGCCAGATGATCGACGAG--ACGGGC--GCGCA

 5047  -GA--TTCTCCTGGGGCGATTCATTTTGATAAAT--AGTAAAGCACCG-G
        ||  |||||||  ||||||||*||**| **|*|  *|****||*||| |
14562  GGAGGTTCTCCT--GGCGATTCCTTCCG-CCACTCGGGCCCGGCGCCGAG

 5091  A-ATTCGC-AGT--CTAACGAGCCGTT-----TAAGAAAC--G-G-A--A
       | ||||*| |||  ||  *||||||||     |  | *||  | | |  |
14609  AGATTCTCGAGTCCCT--GGAGCCGTTCCCGCT--G-CACGTGCGCAGCA

 5126  AG---GG----A-GGA--AGAGAAAG-GAAAGTC-GGTAC-A--T---CG
       *|   ||    | |||  *| |**|| |   |*| ||| | |  |   ||
14654  TGCCCGGCTTCATGGACCTG-GCCAGCG---GCCGGGT-CAAGGTGGACG

 5158  ACCTGCAGGAGACTCGAC--C-CTGACCT
       ||||||||||| *|*|||  | |||||||
14699  ACCTGCAGGAG-GTGGACATCGCTGACCT