Created
December 15, 2023 11:59
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Attempt at a minimal conda env for the lesson "Snakemake for Bioinformatics"
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| # attempt at making a minimal conda env for the lesson "Snakemake for Bioinformatics" | |
| # https://carpentries-incubator.github.io/snakemake-novice-bioinformatics | |
| name: snakemake_lesson | |
| channels: | |
| - conda-forge | |
| - bioconda | |
| - defaults | |
| dependencies: | |
| - bioconda::rename | |
| - conda-forge:coreutils | |
| - fastqc | |
| - fastx_toolkit | |
| - gnuplot | |
| - graphicsmagick | |
| - graphviz | |
| - kallisto | |
| - multiqc | |
| - salmon=1.4.0 | |
| - snakemake=5 |
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Works for my 2017 MacBook Pro.