Laurent Gautier lgautier

## multiproc_lab.py
import argparse
import multiprocessing as mp
import uuid
import rpy2.rinterface as ri
import rpy2.rinterface_lib.embedded

R_ID_TAG = '_rpy2_R_id_'


def print_setup(args):

## rpy2-ld-library-path.sh
export LD_LIBRARY_PATH=$(python -m rpy2.situation LD_LIBRARY_PATH):${LD_LIBRARY_PATH}

## demo_benchmark_mashingp.sh
#!/bin/sh

echo
echo '---------------'
echo ' test w/ FASTA '
echo '---------------'

testchrom=chr1.fa.gz

if [ ! -f "${testchrom}" ]; then

## dplyr.ipynb

      
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## rpy2_stap_example
power <- function(x, n) {
  # a not-so-useful reimplementation
  x ^ n
}

square <- function(x) {
  x^2
}

cube <- function(x) {

## ipysetup.py
# This is a setup snippet for an ipython notebook.
# It requires the presence of variable 'setup_digest',
# defined in the cell controlling the setup.
if 'setup_digest' not in locals():
    import rpy2
    %load_ext rpy2.ipython

    # pigheaded / slow rpy2 developpers,
    # customize away:
    from rpy2.robjects.conversion import ri2py

## rmagic_singledispatch
{
 "metadata": {
  "name": "",
  "signature": "sha256:cd75955d68d7ca272ff32886ce865002acb49b25f2e1cfba237539e70925eeda"
 },
 "nbformat": 3,
 "nbformat_minor": 0,
 "worksheets": [
  {
   "cells": [

## gist:955e14077322480803e2
{
 "metadata": {
  "name": "",
  "signature": "sha256:e814b7d85c1dc274b3c62ca6849951326dee84fa31b999f9735064f46fb45a7a"
 },
 "nbformat": 3,
 "nbformat_minor": 0,
 "worksheets": [
  {
   "cells": [

## gist:5426275
{
 "metadata": {
  "name": "Untitled0"
 },
 "nbformat": 3,
 "nbformat_minor": 0,
 "worksheets": [
  {
   "cells": [

## rpy2_ggplot2
{
 "metadata": {
  "name": "Untitled0"
 },
 "nbformat": 3,
 "nbformat_minor": 0,
 "worksheets": [
  {
   "cells": [
    {
	import argparse
	import multiprocessing as mp
	import uuid
	import rpy2.rinterface as ri
	import rpy2.rinterface_lib.embedded

	R_ID_TAG = '_rpy2_R_id_'


	def print_setup(args):
	#!/bin/sh

	echo
	echo '---------------'
	echo ' test w/ FASTA '
	echo '---------------'

	testchrom=chr1.fa.gz

	if [ ! -f "${testchrom}" ]; then
	power <- function(x, n) {
	# a not-so-useful reimplementation
	x ^ n
	}

	square <- function(x) {
	x^2
	}

	cube <- function(x) {
	# This is a setup snippet for an ipython notebook.
	# It requires the presence of variable 'setup_digest',
	# defined in the cell controlling the setup.
	if 'setup_digest' not in locals():
	import rpy2
	%load_ext rpy2.ipython

	# pigheaded / slow rpy2 developpers,
	# customize away:
	from rpy2.robjects.conversion import ri2py
	{
	"metadata": {
	"name": "",
	"signature": "sha256:cd75955d68d7ca272ff32886ce865002acb49b25f2e1cfba237539e70925eeda"
	},
	"nbformat": 3,
	"nbformat_minor": 0,
	"worksheets": [
	{
	"cells": [
	{
	"metadata": {
	"name": "",
	"signature": "sha256:e814b7d85c1dc274b3c62ca6849951326dee84fa31b999f9735064f46fb45a7a"
	},
	"nbformat": 3,
	"nbformat_minor": 0,
	"worksheets": [
	{
	"cells": [
	{
	"metadata": {
	"name": "Untitled0"
	},
	"nbformat": 3,
	"nbformat_minor": 0,
	"worksheets": [
	{
	"cells": [