Laurent Gautier lgautier

## gist:955e14077322480803e2
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## rmagic_singledispatch
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## ipysetup.py
# This is a setup snippet for an ipython notebook.
# It requires the presence of variable 'setup_digest',
# defined in the cell controlling the setup.
if 'setup_digest' not in locals():
    import rpy2
    %load_ext rpy2.ipython

    # pigheaded / slow rpy2 developpers,
    # customize away:
    from rpy2.robjects.conversion import ri2py

## rpy2_stap_example
power <- function(x, n) {
  # a not-so-useful reimplementation
  x ^ n
}

square <- function(x) {
  x^2
}

cube <- function(x) {

## hctree.jl
require("Rif")
using Rif
initr()

m = R("matrix(rnorm(100), nrow=20)")
# A Julia matrix mj of type (Array{Float64, 2}) could
# be used with
# m = RArray{Float64,2}(mj)

d = call(R("dist"), [m])

## rpy2_ggplot2
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## gist:5426275
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## dplyr.ipynb

      
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                lgautier
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              January 18, 2016 21:00
            
          
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## demo_benchmark_mashingp.sh
#!/bin/sh

echo
echo '---------------'
echo ' test w/ FASTA '
echo '---------------'

testchrom=chr1.fa.gz

if [ ! -f "${testchrom}" ]; then

## rpy2-ld-library-path.sh
export LD_LIBRARY_PATH=$(python -m rpy2.situation LD_LIBRARY_PATH):${LD_LIBRARY_PATH}
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	# This is a setup snippet for an ipython notebook.
	# It requires the presence of variable 'setup_digest',
	# defined in the cell controlling the setup.
	if 'setup_digest' not in locals():
	import rpy2
	%load_ext rpy2.ipython

	# pigheaded / slow rpy2 developpers,
	# customize away:
	from rpy2.robjects.conversion import ri2py
	power <- function(x, n) {
	# a not-so-useful reimplementation
	x ^ n
	}

	square <- function(x) {
	x^2
	}

	cube <- function(x) {
	require("Rif")
	using Rif
	initr()

	m = R("matrix(rnorm(100), nrow=20)")
	# A Julia matrix mj of type (Array{Float64, 2}) could
	# be used with
	# m = RArray{Float64,2}(mj)

	d = call(R("dist"), [m])
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	#!/bin/sh

	echo
	echo '---------------'
	echo ' test w/ FASTA '
	echo '---------------'

	testchrom=chr1.fa.gz

	if [ ! -f "${testchrom}" ]; then