lguerard

name: omnipose
channels:
  - conda-forge
  - anaconda
  - defaults
  - pytorch-lts
dependencies:
  - cudatoolkit=10.1.243
  - conda-forge::git
  - conda-forge::mahotas

lguerard

# ─── SCRIPT PARAMETERS ──────────────────────────────────────────────────────────

#@ ImagePlus imp_nuclei
#@ ResultsTable rt
#@ OpService ops
#@ UIService ui
#@ CommandService command

# ─── IMPORTS ────────────────────────────────────────────────────────────────────

lguerard

#@ ImagePlus imp
#@ CommandService command
#@ File(label="Folder with your environment", style="directory", description="Folder with the conda environment") env_folder


from ij import *
from ch.epfl.biop.wrappers.cellpose.ij2commands import Cellpose_SegmentImgPlusAdvanced, CellposePrefsSet
from ij.process import *
from ij.gui import *
from java.awt import *