Example figure in bwakit/README.md, created by OmniGraffle

alt-demo.graffle

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	<key>ActiveLayerIndex</key>
	<integer>0</integer>
	<key>ApplicationVersion</key>
	<array>
		<string>com.omnigroup.OmniGraffle</string>
		<string>139.18.0.187838</string>
	</array>
	<key>AutoAdjust</key>
	<true/>
	<key>BackgroundGraphic</key>
	<dict>
		<key>Bounds</key>
		<string>{{0, 0}, {576, 733}}</string>
		<key>Class</key>
		<string>SolidGraphic</string>
		<key>ID</key>
		<integer>2</integer>
		<key>Style</key>
		<dict>
			<key>shadow</key>
			<dict>
				<key>Draws</key>
				<string>NO</string>
			</dict>
			<key>stroke</key>
			<dict>
				<key>Draws</key>
				<string>NO</string>
			</dict>
		</dict>
	</dict>
	<key>BaseZoom</key>
	<integer>0</integer>
	<key>CanvasOrigin</key>
	<string>{0, 0}</string>
	<key>ColumnAlign</key>
	<integer>1</integer>
	<key>ColumnSpacing</key>
	<real>36</real>
	<key>CreationDate</key>
	<string>2014-11-17 16:51:42 +0000</string>
	<key>Creator</key>
	<string>Heng Li</string>
	<key>DisplayScale</key>
	<string>1 0/72 in = 1 0/72 in</string>
	<key>GraphDocumentVersion</key>
	<integer>8</integer>
	<key>GraphicsList</key>
	<array>
		<dict>
			<key>Bounds</key>
			<string>{{35.699992179870605, 151.89999580383301}, {476, 224}}</string>
			<key>Class</key>
			<string>ShapedGraphic</string>
			<key>FitText</key>
			<string>YES</string>
			<key>Flow</key>
			<string>Resize</string>
			<key>FontInfo</key>
			<dict>
				<key>Font</key>
				<string>AndaleMono</string>
				<key>Size</key>
				<real>12</real>
			</dict>
			<key>ID</key>
			<integer>28</integer>
			<key>Shape</key>
			<string>Rectangle</string>
			<key>Style</key>
			<dict>
				<key>fill</key>
				<dict>
					<key>Draws</key>
					<string>NO</string>
				</dict>
				<key>shadow</key>
				<dict>
					<key>Draws</key>
					<string>NO</string>
				</dict>
				<key>stroke</key>
				<dict>
					<key>Draws</key>
					<string>NO</string>
				</dict>
			</dict>
			<key>Text</key>
			<dict>
				<key>Align</key>
				<integer>0</integer>
				<key>Pad</key>
				<integer>0</integer>
				<key>Text</key>
				<string>{\rtf1\ansi\ansicpg1252\cocoartf1265\cocoasubrtf210
\cocoascreenfonts1{\fonttbl\f0\fnil\fcharset0 Consolas;\f1\fnil\fcharset0 Consolas-Bold;}
{\colortbl;\red255\green255\blue255;\red0\green0\blue0;\red127\green127\blue127;\red255\green0\blue0;
\red204\green204\blue204;\red0\green0\blue255;\red0\green128\blue0;\red255\green128\blue0;}
\pard\tx560\tx1120\tx1680\tx2240\tx2800\tx3360\tx3920\tx4480\tx5040\tx5600\tx6160\tx6720\pardirnatural

\f0\fs24 \cf2       Read: A\cf0 TCAGCATC\
\cf2 \
 ALT ctg 1:       \cf3  TGA\cf3 AA---CGAATGCAAATGGTCA
\f1\b \cf4 ATCAGCATC
\f0\b0 \cf3 GAACTAGTCACAT\cf2 \
           \cf3         |||||\cf5  (high div) \cf3 ||||||\cf5  (novel ins)\cf3  ||||||||||\cf2 \
Chromosome:\cf3  GCGTACATGATACGA
\f1\b \cf6 ATCgGCATC
\f0\b0 \cf3 ATGGTC-------------CTAGTCACATCGTAATC\
\cf2            \cf3         |||||||||||| ||||||||||\cf5  (novel ins) \cf3 ||||||||||\
\cf2  ALT ctg 2:\cf3         TGATACGA
\f1\b \cf7 ATCgcCATC
\f0\b0 \cf3 ATGGTCA
\f1\b \cf8 ATCgcCAgC
\f0\b0 \cf3 GAACTAGTCACAT\
\
\cf2        4 potential hits: 
\f1\b \cf4 ATCAGCATC
\f0\b0 \cf0  &gt; 
\f1\b \cf6 ATCgGCATC
\f0\b0 \cf0  &gt; 
\f1\b \cf7 ATCgcCATC
\f0\b0 \cf2  &gt; 
\f1\b \cf8 ATCgcCAgC\
\pard\tx560\tx1120\tx1680\tx2240\tx2800\tx3360\tx3920\tx4480\tx5040\tx5600\tx6160\tx6720\pardirnatural

\f0\b0 \cf0            2 hit groups: \{
\f1\b \cf4 ATCAGCATC
\f0\b0 \cf0 ,
\f1\b \cf8 ATCgcCAgC
\f0\b0 \cf2 \} and\cf0  \{
\f1\b \cf6 ATCgGCATC
\f0\b0 \cf2 ,
\f1\b \cf7 ATCgcCATC
\f0\b0 \cf2 \}\
\cf0 Hits considered in mapQ: 
\f1\b \cf4 ATCAGCATC
\f0\b0 \cf0  and 
\f1\b \cf6 ATCgGCATC
\f0\b0 \cf2  (best from each group)
\f1\b \cf6 \
\pard\tx560\tx1120\tx1680\tx2240\tx2800\tx3360\tx3920\tx4480\tx5040\tx5600\tx6160\tx6720\pardirnatural

\f0\b0 \cf3 \
\cf2       In the output SAM: 
\f1\b \cf6 ATCgGCATC
\f0\b0 \cf2  as the primary SAM line with mapQ=0\
                         
\f1\b \cf4 ATCAGCATC
\f0\b0 \cf2  as a supplementary line with mapQ&gt;0\
                         
\f1\b \cf8 ATCgcCAgC
\f0\b0 \cf2  as a supplementary line with mapQ&gt;0\
                         
\f1\b \cf7 ATCgcCATC
\f0\b0 \cf2  in an XA tag, not as a separate line}</string>
				<key>VerticalPad</key>
				<integer>0</integer>
			</dict>
			<key>Wrap</key>
			<string>NO</string>
		</dict>
	</array>
	<key>GridInfo</key>
	<dict>
		<key>GridSpacing</key>
		<real>7.1999998092651367</real>
		<key>MajorGridSpacing</key>
		<integer>10</integer>
		<key>SnapsToGrid</key>
		<string>YES</string>
	</dict>
	<key>GuidesLocked</key>
	<string>NO</string>
	<key>GuidesVisible</key>
	<string>YES</string>
	<key>HPages</key>
	<integer>1</integer>
	<key>ImageCounter</key>
	<integer>1</integer>
	<key>KeepToScale</key>
	<false/>
	<key>Layers</key>
	<array>
		<dict>
			<key>Lock</key>
			<string>NO</string>
			<key>Name</key>
			<string>Layer 1</string>
			<key>Print</key>
			<string>YES</string>
			<key>View</key>
			<string>YES</string>
		</dict>
	</array>
	<key>LayoutInfo</key>
	<dict>
		<key>Animate</key>
		<string>NO</string>
		<key>circoMinDist</key>
		<real>18</real>
		<key>circoSeparation</key>
		<real>0.0</real>
		<key>layoutEngine</key>
		<string>dot</string>
		<key>neatoSeparation</key>
		<real>0.0</real>
		<key>twopiSeparation</key>
		<real>0.0</real>
	</dict>
	<key>LinksVisible</key>
	<string>NO</string>
	<key>MagnetsVisible</key>
	<string>NO</string>
	<key>MasterSheets</key>
	<array/>
	<key>ModificationDate</key>
	<string>2014-11-17 18:28:10 +0000</string>
	<key>Modifier</key>
	<string>Heng Li</string>
	<key>NotesVisible</key>
	<string>NO</string>
	<key>Orientation</key>
	<integer>2</integer>
	<key>OriginVisible</key>
	<string>NO</string>
	<key>PageBreaks</key>
	<string>YES</string>
	<key>PrintInfo</key>
	<dict>
		<key>NSBottomMargin</key>
		<array>
			<string>float</string>
			<string>41</string>
		</array>
		<key>NSHorizonalPagination</key>
		<array>
			<string>coded</string>
			<string>BAtzdHJlYW10eXBlZIHoA4QBQISEhAhOU051bWJlcgCEhAdOU1ZhbHVlAISECE5TT2JqZWN0AIWEASqEhAFxlwCG</string>
		</array>
		<key>NSLeftMargin</key>
		<array>
			<string>float</string>
			<string>18</string>
		</array>
		<key>NSPaperSize</key>
		<array>
			<string>size</string>
			<string>{612, 792}</string>
		</array>
		<key>NSPrintReverseOrientation</key>
		<array>
			<string>int</string>
			<string>0</string>
		</array>
		<key>NSRightMargin</key>
		<array>
			<string>float</string>
			<string>18</string>
		</array>
		<key>NSTopMargin</key>
		<array>
			<string>float</string>
			<string>18</string>
		</array>
	</dict>
	<key>PrintOnePage</key>
	<false/>
	<key>ReadOnly</key>
	<string>NO</string>
	<key>RowAlign</key>
	<integer>1</integer>
	<key>RowSpacing</key>
	<real>36</real>
	<key>SheetTitle</key>
	<string>Canvas 1</string>
	<key>SmartAlignmentGuidesActive</key>
	<string>YES</string>
	<key>SmartDistanceGuidesActive</key>
	<string>YES</string>
	<key>UniqueID</key>
	<integer>1</integer>
	<key>UseEntirePage</key>
	<false/>
	<key>VPages</key>
	<integer>1</integer>
	<key>WindowInfo</key>
	<dict>
		<key>CurrentSheet</key>
		<integer>0</integer>
		<key>ExpandedCanvases</key>
		<array>
			<dict>
				<key>name</key>
				<string>Canvas 1</string>
			</dict>
		</array>
		<key>Frame</key>
		<string>{{367, 6}, {710, 872}}</string>
		<key>ListView</key>
		<true/>
		<key>OutlineWidth</key>
		<integer>142</integer>
		<key>RightSidebar</key>
		<false/>
		<key>ShowRuler</key>
		<true/>
		<key>Sidebar</key>
		<true/>
		<key>SidebarWidth</key>
		<integer>120</integer>
		<key>VisibleRegion</key>
		<string>{{0, 0}, {575, 733}}</string>
		<key>Zoom</key>
		<real>1</real>
		<key>ZoomValues</key>
		<array>
			<array>
				<string>Canvas 1</string>
				<real>1</real>
				<real>1</real>
			</array>
		</array>
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