Last active
June 22, 2018 17:20
-
-
Save liangyy/5cb444e7182a17f3fe79902e94c43fbf to your computer and use it in GitHub Desktop.
conda environment for deep_variant_annotation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # packages in environment at /project2/xinhe/yanyul/softwares/Anaconda2/envs/deepvarpred_test: | |
| # | |
| bedtools 2.25.0 2 bioconda | |
| bzip2 1.0.6 1 conda-forge | |
| ca-certificates 2017.1.23 0 conda-forge | |
| cairo 1.14.8 0 | |
| certifi 2017.1.23 py35_0 conda-forge | |
| cffi 1.7.0 py35_0 conda-forge | |
| cryptography 1.7.1 py35_0 | |
| curl 7.52.1 0 conda-forge | |
| decorator 4.0.11 <pip> | |
| docutils 0.13.1 py35_0 conda-forge | |
| dropbox 7.2.1 py35_0 conda-forge | |
| expat 2.1.0 2 conda-forge | |
| feather-format 0.3.1 py35_1 conda-forge | |
| filechunkio 1.8 py35_1 conda-forge | |
| fontconfig 2.12.1 3 | |
| freetype 2.5.5 2 | |
| ftputil 3.3.1 py35_0 conda-forge | |
| gettext 0.19.7 1 conda-forge | |
| glib 2.50.2 1 | |
| gmp 6.1.0 0 | |
| graphite2 1.3.9 0 conda-forge | |
| graphviz 2.38.0 3 bioconda | |
| gsl 2.2.1 1 conda-forge | |
| h5py 2.7.0 <pip> | |
| harfbuzz 0.9.39 2 | |
| icu 54.1 0 | |
| idna 2.1 py35_0 conda-forge | |
| ipython 5.3.0 <pip> | |
| ipython-genutils 0.2.0 <pip> | |
| jpeg 9b 0 conda-forge | |
| Keras 2.0.0 <pip> | |
| libffi 3.2.1 3 conda-forge | |
| libgcc 5.2.0 0 | |
| libiconv 1.14 4 conda-forge | |
| libpng 1.6.28 0 conda-forge | |
| libtiff 4.0.6 7 conda-forge | |
| libtool 2.4.6 0 conda-forge | |
| libxml2 2.9.3 0 bioconda | |
| mkl 2017.0.1 0 | |
| ncurses 5.9 10 conda-forge | |
| numpy 1.12.1 py35_0 | |
| openssl 1.0.2k 0 conda-forge | |
| pandas 0.19.2 np112py35_1 conda-forge | |
| pandoc 1.15.0.6 0 | |
| pango 1.40.3 1 | |
| paramiko 2.1.2 py35_0 conda-forge | |
| pcre 8.39 0 conda-forge | |
| pexpect 4.2.1 <pip> | |
| pickleshare 0.7.4 <pip> | |
| pip 9.0.1 py35_0 conda-forge | |
| pixman 0.34.0 0 conda-forge | |
| plinkio 0.9.6 <pip> | |
| prompt-toolkit 1.0.14 <pip> | |
| protobuf 3.2.0 <pip> | |
| ptyprocess 0.5.1 <pip> | |
| pyasn1 0.2.3 py35_0 conda-forge | |
| pycparser 2.17 py35_0 conda-forge | |
| Pygments 2.2.0 <pip> | |
| pysam 0.11.1 <pip> | |
| pysftp 0.2.9 py35_0 bioconda | |
| python 3.5.1 5 | |
| python-dateutil 2.6.0 py35_0 conda-forge | |
| pytz 2017.2 py35_0 conda-forge | |
| pyyaml 3.11 py35_0 conda-forge | |
| r 3.3.1 r3.3.1_1 r | |
| r-assertthat 0.1 r3.3.1_4 r | |
| r-backports 1.0.4 r3.3.1_0 r | |
| r-base 3.3.1 6 r | |
| r-base64enc 0.1_3 r3.3.1_0 r | |
| r-bitops 1.0_6 r3.3.1_2 r | |
| r-boot 1.3_18 r3.3.1_0 r | |
| r-catools 1.17.1 r3.3.1_1 bioconda | |
| r-class 7.3_14 r3.3.1_0 r | |
| r-cluster 2.0.5 r3.3.1_0 r | |
| r-codetools 0.2_15 r3.3.1_0 r | |
| r-colorspace 1.3_1 r3.3.1_0 r | |
| r-dichromat 2.0_0 r3.3.1_2 r | |
| r-digest 0.6.12 r3.3.1_0 bioconda | |
| r-evaluate 0.10 r3.3.1_0 r | |
| r-feather 0.3.0 r3.3.1_0 r | |
| r-foreign 0.8_67 r3.3.1_0 r | |
| r-formatr 1.4 r3.3.1_0 r | |
| r-ggplot2 2.2.1 r3.3.1_0 bioconda | |
| r-gtable 0.2.0 r3.3.1_0 r | |
| r-highr 0.6 r3.3.1_0 r | |
| r-hms 0.3 r3.3.1_0 r | |
| r-htmltools 0.3 r3.3.1_0 bioconda | |
| r-jsonlite 0.9.19 r3.3.1_1 bioconda | |
| r-kernsmooth 2.23_15 r3.3.1_0 r | |
| r-knitr 1.12.3 r3.3.1_0 bioconda | |
| r-labeling 0.3 r3.3.1_2 r | |
| r-lattice 0.20_34 r3.3.1_0 r | |
| r-lazyeval 0.2.0 r3.3.1_0 r | |
| r-magrittr 1.5 r3.3.1_0 bioconda | |
| r-markdown 0.7.7 r3.3.1_2 r | |
| r-mass 7.3_45 r3.3.1_0 r | |
| r-matrix 1.2_7.1 r3.3.1_0 r | |
| r-mgcv 1.8_12 r3.3.1_0 r | |
| r-mime 0.5 r3.3.1_0 r | |
| r-munsell 0.4.3 r3.3.1_0 r | |
| r-nlme 3.1_128 r3.3.1_0 r | |
| r-nnet 7.3_12 r3.3.1_0 r | |
| r-plyr 1.8.4 r3.3.1_0 r | |
| r-rcolorbrewer 1.1_2 r3.3.1_3 r | |
| r-rcpp 0.12.8 r3.3.1_0 r | |
| r-recommended 3.3.1 r3.3.1_0 r | |
| r-reshape2 1.4.2 r3.3.1_0 bioconda | |
| r-rmarkdown 0.9.5 r3.3.1_0 bioconda | |
| r-rpart 4.1_10 r3.3.1_0 r | |
| r-rprojroot 1.1 r3.3.1_0 r | |
| r-scales 0.4.1 r3.3.1_1 bioconda | |
| r-spatial 7.3_11 r3.3.1_0 r | |
| r-stringi 1.1.2 r3.3.1_0 r | |
| r-stringr 1.1.0 r3.3.1_0 bioconda | |
| r-survival 2.39_4 r3.3.1_0 r | |
| r-tibble 1.2 r3.3.1_1 bioconda | |
| r-yaml 2.1.13 r3.3.1_1 bioconda | |
| readline 6.2 0 conda-forge | |
| requests 2.13.0 py35_0 conda-forge | |
| rpy2 2.7.8 py35r3.3.1_1 bioconda | |
| rpy2 2.8.5 <pip> | |
| scikit-learn 0.18.1 <pip> | |
| scipy 0.19.0 <pip> | |
| setuptools 33.1.1 py35_0 conda-forge | |
| simplegeneric 0.8.1 <pip> | |
| six 1.10.0 py35_1 conda-forge | |
| sklearn 0.0 <pip> | |
| snakemake 3.11.0 py35_1 bioconda | |
| sqlite 3.13.0 1 conda-forge | |
| tensorflow 1.0.1 <pip> | |
| Theano 0.9.0 <pip> | |
| tk 8.5.18 0 | |
| traitlets 4.3.2 <pip> | |
| urllib3 1.20 py35_1 conda-forge | |
| wcwidth 0.1.7 <pip> | |
| wheel 0.29.0 py35_0 conda-forge | |
| wrapt 1.10.8 py35_0 conda-forge | |
| xz 5.2.2 0 conda-forge | |
| yaml 0.1.6 0 conda-forge | |
| zlib 1.2.8 3 conda-forge |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment