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liezl200/imputation server logs Secret

Created January 3, 2020 01:13
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imputation server logs
Last login: Mon Dec 23 16:41:56 on ttys007
docker(base) liezls-mbp:~ lie$ docker logs
"docker logs" requires exactly 1 argument.
See 'docker logs --help'.
Usage: docker logs [OPTIONS] CONTAINER
Fetch the logs of a container
(base) liezls-mbp:~ lie$ docker logs --timestamps
"docker logs" requires exactly 1 argument.
See 'docker logs --help'.
Usage: docker logs [OPTIONS] CONTAINER
Fetch the logs of a container
(base) liezls-mbp:~ lie$ docker logs --timestamps adefde2f84c3
2019-12-24T01:04:36.350856300Z no repository set
2019-12-24T01:04:36.390787400Z set amount cores to 4
2019-12-24T01:04:36.391236500Z set hostname to 172.17.0.3
2019-12-24T01:04:36.397153100Z No HDFS folder in data folder. Format Namenode...
2019-12-24T01:04:38.201147200Z 19/12/24 01:04:38 INFO namenode.NameNode: STARTUP_MSG:
2019-12-24T01:04:38.201192400Z /************************************************************
2019-12-24T01:04:38.201214000Z STARTUP_MSG: Starting NameNode
2019-12-24T01:04:38.201242100Z STARTUP_MSG: user = hdfs
2019-12-24T01:04:38.201262900Z STARTUP_MSG: host = adefde2f84c3/172.17.0.3
2019-12-24T01:04:38.201283400Z STARTUP_MSG: args = [-format]
2019-12-24T01:04:38.201303700Z STARTUP_MSG: version = 2.6.0-cdh5.16.2
2019-12-24T01:04:38.201337200Z STARTUP_MSG: classpath = /etc/hadoop/conf:/usr/lib/hadoop/lib/httpclient-4.2.5.jar:/usr/lib/hadoop/lib/jasper-runtime-5.5.23.jar:/usr/lib/hadoop/lib/commons-el-1.0.jar:/usr/lib/hadoop/lib/jaxb-api-2.2.2.jar:/usr/lib/hadoop/lib/commons-httpclient-3.1.jar:/usr/lib/hadoop/lib/stax-api-1.0-2.jar:/usr/lib/hadoop/lib/hamcrest-core-1.3.jar:/usr/lib/hadoop/lib/xz-1.0.jar:/usr/lib/hadoop/lib/jsp-api-2.1.jar:/usr/lib/hadoop/lib/commons-codec-1.4.jar:/usr/lib/hadoop/lib/jersey-json-1.9.jar:/usr/lib/hadoop/lib/logredactor-1.0.3.jar:/usr/lib/hadoop/lib/servlet-api-2.5.jar:/usr/lib/hadoop/lib/commons-configuration-1.6.jar:/usr/lib/hadoop/lib/avro.jar:/usr/lib/hadoop/lib/jsr305-3.0.0.jar:/usr/lib/hadoop/lib/commons-io-2.4.jar:/usr/lib/hadoop/lib/commons-logging-1.1.3.jar:/usr/lib/hadoop/lib/jasper-compiler-5.5.23.jar:/usr/lib/hadoop/lib/activation-1.1.jar:/usr/lib/hadoop/lib/commons-beanutils-1.9.2.jar:/usr/lib/hadoop/lib/azure-data-lake-store-sdk-2.2.9.jar:/usr/lib/hadoop/lib/curator-client-2.7.1.jar:/usr/lib/hadoop/lib/commons-digester-1.8.jar:/usr/lib/hadoop/lib/xmlenc-0.52.jar:/usr/lib/hadoop/lib/htrace-core4-4.0.1-incubating.jar:/usr/lib/hadoop/lib/paranamer-2.3.jar:/usr/lib/hadoop/lib/apacheds-i18n-2.0.0-M15.jar:/usr/lib/hadoop/lib/aws-java-sdk-bundle-1.11.134.jar:/usr/lib/hadoop/lib/asm-3.2.jar:/usr/lib/hadoop/lib/gson-2.2.4.jar:/usr/lib/hadoop/lib/commons-cli-1.2.jar:/usr/lib/hadoop/lib/jsch-0.1.42.jar:/usr/lib/hadoop/lib/junit-4.11.jar:/usr/lib/hadoop/lib/api-util-1.0.0-M20.jar:/usr/lib/hadoop/lib/jackson-jaxrs-1.8.10.jar:/usr/lib/hadoop/lib/java-xmlbuilder-0.4.jar:/usr/lib/hadoop/lib/jetty-6.1.26.cloudera.4.jar:/usr/lib/hadoop/lib/commons-math3-3.1.1.jar:/usr/lib/hadoop/lib/zookeeper.jar:/usr/lib/hadoop/lib/commons-compress-1.4.1.jar:/usr/lib/hadoop/lib/curator-recipes-2.7.1.jar:/usr/lib/hadoop/lib/netty-3.10.5.Final.jar:/usr/lib/hadoop/lib/jackson-xc-1.8.10.jar:/usr/lib/hadoop/lib/curator-framework-2.7.1.jar:/usr/lib/hadoop/lib/commons-lang-2.6.jar:/usr/lib/hadoop/lib/slf4j-log4j12.jar:/usr/lib/hadoop/lib/commons-beanutils-core-1.8.0.jar:/usr/lib/hadoop/lib/log4j-1.2.17.jar:/usr/lib/hadoop/lib/jersey-core-1.9.jar:/usr/lib/hadoop/lib/guava-11.0.2.jar:/usr/lib/hadoop/lib/apacheds-kerberos-codec-2.0.0-M15.jar:/usr/lib/hadoop/lib/jettison-1.1.jar:/usr/lib/hadoop/lib/jets3t-0.9.0.jar:/usr/lib/hadoop/lib/jersey-server-1.9.jar:/usr/lib/hadoop/lib/jaxb-impl-2.2.3-1.jar:/usr/lib/hadoop/lib/commons-net-3.1.jar:/usr/lib/hadoop/lib/slf4j-api-1.7.5.jar:/usr/lib/hadoop/lib/httpcore-4.2.5.jar:/usr/lib/hadoop/lib/snappy-java-1.0.4.1.jar:/usr/lib/hadoop/lib/jetty-util-6.1.26.cloudera.4.jar:/usr/lib/hadoop/lib/api-asn1-api-1.0.0-M20.jar:/usr/lib/hadoop/lib/mockito-all-1.8.5.jar:/usr/lib/hadoop/lib/commons-collections-3.2.2.jar:/usr/lib/hadoop/lib/protobuf-java-2.5.0.jar:/usr/lib/hadoop/.//parquet-hadoop.jar:/usr/lib/hadoop/.//parquet-encoding.jar:/usr/lib/hadoop/.//parquet-column.jar:/usr/lib/hadoop/.//hadoop-nfs-2.6.0-cdh5.16.2.jar:/usr/lib/hadoop/.//parquet-avro.jar:/usr/lib/hadoop/.//parquet-format.jar:/usr/lib/hadoop/.//parquet-format-sources.jar:/usr/lib/hadoop/.//parquet-format-javadoc.jar:/usr/lib/hadoop/.//parquet-cascading.jar:/usr/lib/hadoop/.//parquet-hadoop-bundle.jar:/usr/lib/hadoop/.//parquet-tools.jar:/usr/lib/hadoop/.//parquet-common.jar:/usr/lib/hadoop/.//hadoop-aws.jar:/usr/lib/hadoop/.//parquet-thrift.jar:/usr/lib/hadoop/.//parquet-generator.jar:/usr/lib/hadoop/.//parquet-scala_2.10.jar:/usr/lib/hadoop/.//parquet-pig.jar:/usr/lib/hadoop/.//hadoop-nfs.jar:/usr/lib/hadoop/.//hadoop-azure-datalake-2.6.0-cdh5.16.2.jar:/usr/lib/hadoop/.//hadoop-common-2.6.0-cdh5.16.2.jar:/usr/lib/hadoop/.//hadoop-aws-2.6.0-cdh5.16.2.jar:/usr/lib/hadoop/.//hadoop-annotations-2.6.0-cdh5.16.2.jar:/usr/lib/hadoop/.//parquet-pig-bundle.jar:/usr/lib/hadoop/.//hadoop-azure-datalake.jar:/usr/lib/hadoop/.//hadoop-common-2.6.0-cdh5.16.2-tests.jar:/usr/lib/hadoop/.//hadoop-annotations.jar:/usr/lib/hadoop/.//hadoop-common-tests.jar:/usr/lib/hadoop/.//hadoop-auth.jar:/usr/lib/hadoop/.//parquet-test-hadoop2.jar:/usr/lib/hadoop/.//hadoop-common.jar:/usr/lib/hadoop/.//hadoop-auth-2.6.0-cdh5.16.2.jar:/usr/lib/hadoop/.//parquet-protobuf.jar:/usr/lib/hadoop/.//parquet-jackson.jar:/usr/lib/hadoop/.//parquet-scrooge_2.10.jar:/usr/lib/hadoop-hdfs/./:/usr/lib/hadoop-hdfs/lib/jackson-mapper-asl-1.8.10-cloudera.2.jar:/usr/lib/hadoop-hdfs/lib/jasper-runtime-5.5.23.jar:/usr/lib/hadoop-hdfs/lib/commons-el-1.0.jar:/usr/lib/hadoop-hdfs/lib/jsp-api-2.1.jar:/usr/lib/hadoop-hdfs/lib/commons-codec-1.4.jar:/usr/lib/hadoop-hdfs/lib/servlet-api-2.5.jar:/usr/lib/hadoop-hdfs/lib/jsr305-3.0.0.jar:/usr/lib/hadoop-hdfs/lib/commons-io-2.4.jar:/usr/lib/hadoop-hdfs/lib/commons-logging-1.1.3.jar:/usr/lib/hadoop-hdfs/lib/xmlenc-0.52.jar:/usr/lib/hadoop-hdfs/lib/htrace-core4-4.0.1-incubating.jar:/usr/lib/hadoop-hdfs/lib/jackson-core-asl-1.8.10.jar:/usr/lib/hadoop-hdfs/lib/leveldbjni-all-1.8.jar:/usr/lib/hadoop-hdfs/lib/asm-3.2.jar:/usr/lib/hadoop-hdfs/lib/commons-cli-1.2.jar:/usr/lib/hadoop-hdfs/lib/jetty-6.1.26.cloudera.4.jar:/usr/lib/hadoop-hdfs/lib/commons-daemon-1.0.13.jar:/usr/lib/hadoop-hdfs/lib/netty-3.10.5.Final.jar:/usr/lib/hadoop-hdfs/lib/commons-lang-2.6.jar:/usr/lib/hadoop-hdfs/lib/log4j-1.2.17.jar:/usr/lib/hadoop-hdfs/lib/jersey-core-1.9.jar:/usr/lib/hadoop-hdfs/lib/guava-11.0.2.jar:/usr/lib/hadoop-hdfs/lib/jersey-server-1.9.jar:/usr/lib/hadoop-hdfs/lib/xercesImpl-2.9.1.jar:/usr/lib/hadoop-hdfs/lib/xml-apis-1.3.04.jar:/usr/lib/hadoop-hdfs/lib/jetty-util-6.1.26.cloudera.4.jar:/usr/lib/hadoop-hdfs/lib/protobuf-java-2.5.0.jar:/usr/lib/hadoop-hdfs/.//hadoop-hdfs-nfs-2.6.0-cdh5.16.2.jar:/usr/lib/hadoop-hdfs/.//hadoop-hdfs.jar:/usr/lib/hadoop-hdfs/.//hadoop-hdfs-tests.jar:/usr/lib/hadoop-hdfs/.//hadoop-hdfs-nfs.jar:/usr/lib/hadoop-hdfs/.//hadoop-hdfs-2.6.0-cdh5.16.2-tests.jar:/usr/lib/hadoop-hdfs/.//hadoop-hdfs-2.6.0-cdh5.16.2.jar:/usr/lib/hadoop-yarn/lib/jackson-mapper-asl-1.8.10-cloudera.2.jar:/usr/lib/hadoop-yarn/lib/jaxb-api-2.2.2.jar:/usr/lib/hadoop-yarn/lib/aopalliance-1.0.jar:/usr/lib/hadoop-yarn/lib/stax-api-1.0-2.jar:/usr/lib/hadoop-yarn/lib/xz-1.0.jar:/usr/lib/hadoop-yarn/lib/commons-codec-1.4.jar:/usr/lib/hadoop-yarn/lib/jersey-json-1.9.jar:/usr/lib/hadoop-yarn/lib/servlet-api-2.5.jar:/usr/lib/hadoop-yarn/lib/jersey-client-1.9.jar:/usr/lib/hadoop-yarn/lib/jsr305-3.0.0.jar:/usr/lib/hadoop-yarn/lib/commons-io-2.4.jar:/usr/lib/hadoop-yarn/lib/commons-logging-1.1.3.jar:/usr/lib/hadoop-yarn/lib/guice-3.0.jar:/usr/lib/hadoop-yarn/lib/activation-1.1.jar:/usr/lib/hadoop-yarn/lib/jersey-guice-1.9.jar:/usr/lib/hadoop-yarn/lib/jackson-core-asl-1.8.10.jar:/usr/lib/hadoop-yarn/lib/leveldbjni-all-1.8.jar:/usr/lib/hadoop-yarn/lib/asm-3.2.jar:/usr/lib/hadoop-yarn/lib/guice-servlet-3.0.jar:/usr/lib/hadoop-yarn/lib/commons-cli-1.2.jar:/usr/lib/hadoop-yarn/lib/jackson-jaxrs-1.8.10.jar:/usr/lib/hadoop-yarn/lib/jline-2.11.jar:/usr/lib/hadoop-yarn/lib/jetty-6.1.26.cloudera.4.jar:/usr/lib/hadoop-yarn/lib/zookeeper.jar:/usr/lib/hadoop-yarn/lib/commons-compress-1.4.1.jar:/usr/lib/hadoop-yarn/lib/jackson-xc-1.8.10.jar:/usr/lib/hadoop-yarn/lib/commons-lang-2.6.jar:/usr/lib/hadoop-yarn/lib/javax.inject-1.jar:/usr/lib/hadoop-yarn/lib/log4j-1.2.17.jar:/usr/lib/hadoop-yarn/lib/jersey-core-1.9.jar:/usr/lib/hadoop-yarn/lib/guava-11.0.2.jar:/usr/lib/hadoop-yarn/lib/jettison-1.1.jar:/usr/lib/hadoop-yarn/lib/jersey-server-1.9.jar:/usr/lib/hadoop-yarn/lib/jaxb-impl-2.2.3-1.jar:/usr/lib/hadoop-yarn/lib/jetty-util-6.1.26.cloudera.4.jar:/usr/lib/hadoop-yarn/lib/commons-collections-3.2.2.jar:/usr/lib/hadoop-yarn/lib/protobuf-java-2.5.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-registry-2.6.0-cdh5.16.2.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-common.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-tests.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-common.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-web-proxy.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-api.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-applicationhistoryservice-2.6.0-cdh5.16.2.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-tests-2.6.0-cdh5.16.2.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-common-2.6.0-cdh5.16.2.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-client-2.6.0-cdh5.16.2.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-applications-distributedshell-2.6.0-cdh5.16.2.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-applicationhistoryservice.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-common-2.6.0-cdh5.16.2.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-registry.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-nodemanager-2.6.0-cdh5.16.2.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-client.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-api-2.6.0-cdh5.16.2.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-nodemanager.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-resourcemanager-2.6.0-cdh5.16.2.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-applications-unmanaged-am-launcher-2.6.0-cdh5.16.2.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-applications-unmanaged-am-launcher.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-resourcemanager.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-web-proxy-2.6.0-cdh5.16.2.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-applications-distributedshell.jar:/usr/lib/hadoop-0.20-mapreduce/./:/usr/lib/hadoop-0.20-mapreduce/lib/httpclient-4.2.5.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jasper-runtime-5.5.23.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-el-1.0.jar:/usr/lib/hadoop-0.20-mapreduce/lib/joda-time-2.8.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jaxb-api-2.2.2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-httpclient-3.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/stax-api-1.0-2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/xz-1.0.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jsp-api-2.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-codec-1.4.jar:/usr/lib/hadoop-0.20-mapreduce/lib/hsqldb-1.8.0.10.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jersey-json-1.9.jar:/usr/lib/hadoop-0.20-mapreduce/lib/servlet-api-2.5.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-configuration-1.6.jar:/usr/lib/hadoop-0.20-mapreduce/lib/avro.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jsr305-3.0.0.jar:/usr/lib/hadoop-0.20-mapreduce/lib/hadoop-fairscheduler-2.6.0-mr1-cdh5.16.2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-io-2.4.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-logging-1.1.3.jar:/usr/lib/hadoop-0.20-mapreduce/lib/netty-all-4.0.23.Final.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jasper-compiler-5.5.23.jar:/usr/lib/hadoop-0.20-mapreduce/lib/activation-1.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-beanutils-1.9.2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/curator-client-2.7.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-digester-1.8.jar:/usr/lib/hadoop-0.20-mapreduce/lib/xmlenc-0.52.jar:/usr/lib/hadoop-0.20-mapreduce/lib/htrace-core4-4.0.1-incubating.jar:/usr/lib/hadoop-0.20-mapreduce/lib/paranamer-2.3.jar:/usr/lib/hadoop-0.20-mapreduce/lib/apacheds-i18n-2.0.0-M15.jar:/usr/lib/hadoop-0.20-mapreduce/lib/leveldbjni-all-1.8.jar:/usr/lib/hadoop-0.20-mapreduce/lib/ant-contrib-1.0b3.jar:/usr/lib/hadoop-0.20-mapreduce/lib/aws-java-sdk-bundle-1.11.134.jar:/usr/lib/hadoop-0.20-mapreduce/lib/netty-3.2.2.Final.jar:/usr/lib/hadoop-0.20-mapreduce/lib/asm-3.2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/gson-2.2.4.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jackson-annotations-2.2.3.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-cli-1.2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jackson-databind-2.2.3-cloudera.2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/kfs-0.2.2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jsch-0.1.42.jar:/usr/lib/hadoop-0.20-mapreduce/lib/api-util-1.0.0-M20.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jackson-jaxrs-1.8.10.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jackson-core-asl-1.9.13.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jline-2.11.jar:/usr/lib/hadoop-0.20-mapreduce/lib/java-xmlbuilder-0.4.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jetty-6.1.26.cloudera.4.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-math3-3.1.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/zookeeper.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-compress-1.4.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/curator-recipes-2.7.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jackson-core-2.2.3.jar:/usr/lib/hadoop-0.20-mapreduce/lib/netty-3.10.5.Final.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jackson-xc-1.8.10.jar:/usr/lib/hadoop-0.20-mapreduce/lib/avro-compiler.jar:/usr/lib/hadoop-0.20-mapreduce/lib/curator-framework-2.7.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-lang-2.6.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-beanutils-core-1.8.0.jar:/usr/lib/hadoop-0.20-mapreduce/lib/log4j-1.2.17.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jersey-core-1.9.jar:/usr/lib/hadoop-0.20-mapreduce/lib/guava-11.0.2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/apacheds-kerberos-codec-2.0.0-M15.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jettison-1.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jets3t-0.9.0.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jersey-server-1.9.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jackson-mapper-asl-1.9.13-cloudera.2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jaxb-impl-2.2.3-1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-net-3.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/slf4j-api-1.7.5.jar:/usr/lib/hadoop-0.20-mapreduce/lib/httpcore-4.2.5.jar:/usr/lib/hadoop-0.20-mapreduce/lib/xercesImpl-2.9.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/xml-apis-1.3.04.jar:/usr/lib/hadoop-0.20-mapreduce/lib/snappy-java-1.0.4.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jetty-util-6.1.26.cloudera.4.jar:/usr/lib/hadoop-0.20-mapreduce/lib/api-asn1-api-1.0.0-M20.jar:/usr/lib/hadoop-0.20-mapreduce/lib/mockito-all-1.8.5.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-collections-3.2.2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/protobuf-java-2.5.0.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-examples-2.6.0-mr1-cdh5.16.2.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-tools-2.6.0-mr1-cdh5.16.2.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-test-mr1.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-ant-2.6.0-mr1-cdh5.16.2.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-test-2.6.0-mr1-cdh5.16.2.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-tools-mr1.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-examples.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-core-2.6.0-mr1-cdh5.16.2.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-core-mr1.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-ant-mr1.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-examples-mr1.jar
2019-12-24T01:04:38.201906200Z STARTUP_MSG: build = http://github.com/cloudera/hadoop -r 4f94d60caa4cbb9af0709a2fd96dc3861af9cf20 ; compiled by 'jenkins' on 2019-06-03T10:46Z
2019-12-24T01:04:38.201928100Z STARTUP_MSG: java = 1.7.0_201
2019-12-24T01:04:38.201963800Z ************************************************************/
2019-12-24T01:04:38.208353200Z 19/12/24 01:04:38 INFO namenode.NameNode: registered UNIX signal handlers for [TERM, HUP, INT]
2019-12-24T01:04:38.216391400Z 19/12/24 01:04:38 INFO namenode.NameNode: createNameNode [-format]
2019-12-24T01:04:39.478911300Z Formatting using clusterid: CID-80735278-67ed-4dc8-8575-cdd12a009c6a
2019-12-24T01:04:39.557187300Z 19/12/24 01:04:39 INFO namenode.FSEditLog: Edit logging is async:true
2019-12-24T01:04:39.589162200Z 19/12/24 01:04:39 INFO namenode.FSNamesystem: No KeyProvider found.
2019-12-24T01:04:39.635613300Z 19/12/24 01:04:39 INFO namenode.FSNamesystem: fsLock is fair: true
2019-12-24T01:04:39.751734200Z 19/12/24 01:04:39 INFO blockmanagement.DatanodeManager: dfs.block.invalidate.limit=1000
2019-12-24T01:04:39.751883900Z 19/12/24 01:04:39 INFO blockmanagement.DatanodeManager: dfs.namenode.datanode.registration.ip-hostname-check=true
2019-12-24T01:04:39.754322000Z 19/12/24 01:04:39 INFO blockmanagement.BlockManager: dfs.namenode.startup.delay.block.deletion.sec is set to 000:00:00:00.000
2019-12-24T01:04:39.754560100Z 19/12/24 01:04:39 INFO blockmanagement.BlockManager: The block deletion will start around 2019 Dec 24 01:04:39
2019-12-24T01:04:39.758226200Z 19/12/24 01:04:39 INFO util.GSet: Computing capacity for map BlocksMap
2019-12-24T01:04:39.758258700Z 19/12/24 01:04:39 INFO util.GSet: VM type = 64-bit
2019-12-24T01:04:39.763250700Z 19/12/24 01:04:39 INFO util.GSet: 2.0% max memory 889 MB = 17.8 MB
2019-12-24T01:04:39.763310800Z 19/12/24 01:04:39 INFO util.GSet: capacity = 2^21 = 2097152 entries
2019-12-24T01:04:39.793787500Z 19/12/24 01:04:39 INFO blockmanagement.BlockManager: dfs.block.access.token.enable=false
2019-12-24T01:04:39.794505400Z 19/12/24 01:04:39 WARN conf.Configuration: No unit for dfs.heartbeat.interval(3) assuming SECONDS
2019-12-24T01:04:39.800032400Z 19/12/24 01:04:39 INFO blockmanagement.BlockManager: defaultReplication = 1
2019-12-24T01:04:39.800063400Z 19/12/24 01:04:39 INFO blockmanagement.BlockManager: maxReplication = 512
2019-12-24T01:04:39.800278100Z 19/12/24 01:04:39 INFO blockmanagement.BlockManager: minReplication = 1
2019-12-24T01:04:39.800587300Z 19/12/24 01:04:39 INFO blockmanagement.BlockManager: maxReplicationStreams = 2
2019-12-24T01:04:39.800609800Z 19/12/24 01:04:39 INFO blockmanagement.BlockManager: replicationRecheckInterval = 3000
2019-12-24T01:04:39.800917500Z 19/12/24 01:04:39 INFO blockmanagement.BlockManager: encryptDataTransfer = false
2019-12-24T01:04:39.800939300Z 19/12/24 01:04:39 INFO blockmanagement.BlockManager: maxNumBlocksToLog = 1000
2019-12-24T01:04:39.823066200Z 19/12/24 01:04:39 INFO namenode.FSNamesystem: fsOwner = hdfs (auth:SIMPLE)
2019-12-24T01:04:39.823116700Z 19/12/24 01:04:39 INFO namenode.FSNamesystem: supergroup = supergroup
2019-12-24T01:04:39.823143800Z 19/12/24 01:04:39 INFO namenode.FSNamesystem: isPermissionEnabled = true
2019-12-24T01:04:39.823880100Z 19/12/24 01:04:39 INFO namenode.FSNamesystem: HA Enabled: false
2019-12-24T01:04:39.831426600Z 19/12/24 01:04:39 INFO namenode.FSNamesystem: Append Enabled: true
2019-12-24T01:04:39.986777900Z 19/12/24 01:04:39 INFO util.GSet: Computing capacity for map INodeMap
2019-12-24T01:04:39.986825400Z 19/12/24 01:04:39 INFO util.GSet: VM type = 64-bit
2019-12-24T01:04:39.987126900Z 19/12/24 01:04:39 INFO util.GSet: 1.0% max memory 889 MB = 8.9 MB
2019-12-24T01:04:39.987158000Z 19/12/24 01:04:39 INFO util.GSet: capacity = 2^20 = 1048576 entries
2019-12-24T01:04:39.990550900Z 19/12/24 01:04:39 INFO namenode.FSDirectory: POSIX ACL inheritance enabled? false
2019-12-24T01:04:39.990744500Z 19/12/24 01:04:39 INFO namenode.NameNode: Caching file names occuring more than 10 times
2019-12-24T01:04:40.006451200Z 19/12/24 01:04:40 INFO snapshot.SnapshotManager: Loaded config captureOpenFiles: false, skipCaptureAccessTimeOnlyChange: false, snapshotDiffAllowSnapRootDescendant: true
2019-12-24T01:04:40.019591800Z 19/12/24 01:04:40 INFO util.GSet: Computing capacity for map cachedBlocks
2019-12-24T01:04:40.019850000Z 19/12/24 01:04:40 INFO util.GSet: VM type = 64-bit
2019-12-24T01:04:40.020275600Z 19/12/24 01:04:40 INFO util.GSet: 0.25% max memory 889 MB = 2.2 MB
2019-12-24T01:04:40.020302200Z 19/12/24 01:04:40 INFO util.GSet: capacity = 2^18 = 262144 entries
2019-12-24T01:04:40.023557800Z 19/12/24 01:04:40 INFO namenode.FSNamesystem: dfs.namenode.safemode.threshold-pct = 0.9990000128746033
2019-12-24T01:04:40.023598400Z 19/12/24 01:04:40 INFO namenode.FSNamesystem: dfs.namenode.safemode.min.datanodes = 0
2019-12-24T01:04:40.023656300Z 19/12/24 01:04:40 INFO namenode.FSNamesystem: dfs.namenode.safemode.extension = 0
2019-12-24T01:04:40.031518700Z 19/12/24 01:04:40 INFO metrics.TopMetrics: NNTop conf: dfs.namenode.top.window.num.buckets = 10
2019-12-24T01:04:40.031560900Z 19/12/24 01:04:40 INFO metrics.TopMetrics: NNTop conf: dfs.namenode.top.num.users = 10
2019-12-24T01:04:40.031620700Z 19/12/24 01:04:40 INFO metrics.TopMetrics: NNTop conf: dfs.namenode.top.windows.minutes = 1,5,25
2019-12-24T01:04:40.142878800Z 19/12/24 01:04:40 INFO namenode.FSNamesystem: Retry cache on namenode is enabled
2019-12-24T01:04:40.143212500Z 19/12/24 01:04:40 INFO namenode.FSNamesystem: Retry cache will use 0.03 of total heap and retry cache entry expiry time is 600000 millis
2019-12-24T01:04:40.151298700Z 19/12/24 01:04:40 INFO util.GSet: Computing capacity for map NameNodeRetryCache
2019-12-24T01:04:40.151334400Z 19/12/24 01:04:40 INFO util.GSet: VM type = 64-bit
2019-12-24T01:04:40.151742300Z 19/12/24 01:04:40 INFO util.GSet: 0.029999999329447746% max memory 889 MB = 273.1 KB
2019-12-24T01:04:40.151929900Z 19/12/24 01:04:40 INFO util.GSet: capacity = 2^15 = 32768 entries
2019-12-24T01:04:40.157453100Z 19/12/24 01:04:40 INFO namenode.FSNamesystem: ACLs enabled? false
2019-12-24T01:04:40.157678700Z 19/12/24 01:04:40 INFO namenode.FSNamesystem: XAttrs enabled? true
2019-12-24T01:04:40.157947100Z 19/12/24 01:04:40 INFO namenode.FSNamesystem: Maximum size of an xattr: 16384
2019-12-24T01:04:40.228397300Z 19/12/24 01:04:40 INFO namenode.FSImage: Allocated new BlockPoolId: BP-328304281-172.17.0.3-1577149480180
2019-12-24T01:04:40.275273700Z 19/12/24 01:04:40 INFO common.Storage: Storage directory /data/hadoop/dfs/name has been successfully formatted.
2019-12-24T01:04:40.313599400Z 19/12/24 01:04:40 INFO namenode.FSImageFormatProtobuf: Saving image file /data/hadoop/dfs/name/current/fsimage.ckpt_0000000000000000000 using no compression
2019-12-24T01:04:40.492908900Z 19/12/24 01:04:40 INFO namenode.FSImageFormatProtobuf: Image file /data/hadoop/dfs/name/current/fsimage.ckpt_0000000000000000000 of size 321 bytes saved in 0 seconds .
2019-12-24T01:04:40.529418500Z 19/12/24 01:04:40 INFO namenode.NNStorageRetentionManager: Going to retain 1 images with txid >= 0
2019-12-24T01:04:40.536271700Z 19/12/24 01:04:40 INFO util.ExitUtil: Exiting with status 0
2019-12-24T01:04:40.539247800Z 19/12/24 01:04:40 INFO namenode.NameNode: SHUTDOWN_MSG:
2019-12-24T01:04:40.539274600Z /************************************************************
2019-12-24T01:04:40.539293600Z SHUTDOWN_MSG: Shutting down NameNode at adefde2f84c3/172.17.0.3
2019-12-24T01:04:40.539314000Z ************************************************************/
2019-12-24T01:04:40.711632600Z starting datanode, logging to /var/log/hadoop-hdfs/hadoop-hdfs-datanode-adefde2f84c3.out
2019-12-24T01:04:49.750483900Z * Started Hadoop datanode (hadoop-hdfs-datanode):
2019-12-24T01:04:49.852555500Z starting namenode, logging to /var/log/hadoop-hdfs/hadoop-hdfs-namenode-adefde2f84c3.out
2019-12-24T01:04:59.035410500Z * Started Hadoop namenode:
2019-12-24T01:04:59.137227600Z starting secondarynamenode, logging to /var/log/hadoop-hdfs/hadoop-hdfs-secondarynamenode-adefde2f84c3.out
2019-12-24T01:05:08.191764700Z * Started Hadoop secondarynamenode:
2019-12-24T01:05:10.375191500Z rmr: DEPRECATED: Please use 'rm -r' instead.
2019-12-24T01:05:12.927793200Z rmr: `/var/lib/hadoop-hdfs/cache/mapred/mapred/staging': No such file or directory
2019-12-24T01:05:13.417706300Z + su -s /bin/bash hdfs -c '/usr/bin/hadoop fs -mkdir -p /tmp'
2019-12-24T01:05:17.812635600Z + su -s /bin/bash hdfs -c '/usr/bin/hadoop fs -chmod -R 1777 /tmp'
2019-12-24T01:05:21.701531200Z + su -s /bin/bash hdfs -c '/usr/bin/hadoop fs -mkdir -p /var'
2019-12-24T01:05:25.384914700Z + su -s /bin/bash hdfs -c '/usr/bin/hadoop fs -mkdir -p /var/log'
2019-12-24T01:05:29.205034700Z + su -s /bin/bash hdfs -c '/usr/bin/hadoop fs -chmod -R 1775 /var/log'
2019-12-24T01:05:34.159770900Z + su -s /bin/bash hdfs -c '/usr/bin/hadoop fs -mkdir -p /var/lib/hadoop-hdfs/cache/mapred/mapred/staging'
2019-12-24T01:05:38.732855700Z + su -s /bin/bash hdfs -c '/usr/bin/hadoop fs -chmod 1777 /var/lib/hadoop-hdfs/cache/mapred/mapred/staging'
2019-12-24T01:05:43.039274200Z + su -s /bin/bash hdfs -c '/usr/bin/hadoop fs -chown -R mapred /var/lib/hadoop-hdfs/cache/mapred'
2019-12-24T01:05:47.011356500Z + sudo -u hdfs hadoop fs -mkdir -p /user/cloudgene
2019-12-24T01:05:51.109981300Z + sudo -u hdfs hadoop fs -chown cloudgene /user/cloudgene
2019-12-24T01:06:04.162339400Z /usr/lib/hadoop-0.20-mapreduce/hadoop-core-2.6.0-mr1-cdh5.16.2.jar
2019-12-24T01:06:04.162587400Z /usr/lib/hadoop-0.20-mapreduce/hadoop-core-mr1.jar
2019-12-24T01:06:04.182233600Z starting jobtracker, logging to /var/log/hadoop-0.20-mapreduce/hadoop-hadoop-jobtracker-adefde2f84c3.out
2019-12-24T01:06:04.202383200Z /usr/lib/hadoop-0.20-mapreduce/hadoop-core-2.6.0-mr1-cdh5.16.2.jar
2019-12-24T01:06:04.202421900Z /usr/lib/hadoop-0.20-mapreduce/hadoop-core-mr1.jar
2019-12-24T01:06:10.775975300Z * Started Hadoop jobtracker:
2019-12-24T01:06:10.869277300Z /usr/lib/hadoop-0.20-mapreduce/hadoop-core-2.6.0-mr1-cdh5.16.2.jar
2019-12-24T01:06:10.869317500Z /usr/lib/hadoop-0.20-mapreduce/hadoop-core-mr1.jar
2019-12-24T01:06:10.876930400Z starting tasktracker, logging to /var/log/hadoop-0.20-mapreduce/hadoop-hadoop-tasktracker-adefde2f84c3.out
2019-12-24T01:06:10.891397900Z /usr/lib/hadoop-0.20-mapreduce/hadoop-core-2.6.0-mr1-cdh5.16.2.jar
2019-12-24T01:06:10.891448900Z /usr/lib/hadoop-0.20-mapreduce/hadoop-core-mr1.jar
2019-12-24T01:06:17.848265900Z * Started Hadoop tasktracker:
2019-12-24T01:06:18.269273200Z Congratulations! Cluster is running on 172.17.0.3
2019-12-24T01:07:33.766380600Z
2019-12-24T01:07:33.767226100Z Cloudgene 2.0.4
2019-12-24T01:07:33.767247100Z http://www.cloudgene.io
2019-12-24T01:07:33.767270600Z (c) 2009-2019 Lukas Forer and Sebastian Schoenherr
2019-12-24T01:07:33.784915500Z Built by null on null
2019-12-24T01:07:33.785669300Z Built by null on null
2019-12-24T01:07:33.785708100Z
2019-12-24T01:07:34.680058100Z SLF4J: Class path contains multiple SLF4J bindings.
2019-12-24T01:07:34.680094700Z SLF4J: Found binding in [jar:file:/opt/cloudgene/lib/slf4j-log4j12-1.6.1.jar!/org/slf4j/impl/StaticLoggerBinder.class]
2019-12-24T01:07:34.680123500Z SLF4J: Found binding in [jar:file:/usr/lib/zookeeper/lib/slf4j-log4j12-1.7.5.jar!/org/slf4j/impl/StaticLoggerBinder.class]
2019-12-24T01:07:34.680144700Z SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation.
2019-12-24T01:07:34.704620000Z Use Haddop configuration folder /etc/hadoop/conf
2019-12-24T01:07:35.176804000Z 19/12/24 01:07:35 INFO mapred.Main: Cloudgene 2.0.4
2019-12-24T01:07:35.177307800Z 19/12/24 01:07:35 INFO mapred.Main: Built by null on null
2019-12-24T01:07:35.221590000Z 19/12/24 01:07:35 INFO mapred.Main: Establish connection successful
2019-12-24T01:07:35.221623900Z 19/12/24 01:07:35 INFO mapred.Main: Setup Database...
2019-12-24T01:07:35.703588900Z 19/12/24 01:07:35 WARN h2.H2Connector: Table 'database_versions' not found'
2019-12-24T01:07:35.703800200Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Read current version from file: 0.0.0
2019-12-24T01:07:35.704076200Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Current app version: 2.0.4
2019-12-24T01:07:35.704636300Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Database needs update...
2019-12-24T01:07:35.704667000Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Updating database from 0.0.0 to 2.0.4...
2019-12-24T01:07:35.705854400Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Loading SQL update for version 0.0.1
2019-12-24T01:07:35.774059100Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: DB SQL Update 0.0.1 finished
2019-12-24T01:07:35.776591500Z 19/12/24 01:07:35 WARN h2.H2Connector: Table 'database_versions' not found'
2019-12-24T01:07:35.787613600Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Table database_versions created.
2019-12-24T01:07:35.793053800Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Version in DB updated to: 0.0.1
2019-12-24T01:07:35.793612500Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Loading SQL update for version 1.0.3
2019-12-24T01:07:35.795551700Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: DB SQL Update 1.0.3 finished
2019-12-24T01:07:35.798310300Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Version in DB updated to: 1.0.3
2019-12-24T01:07:35.798677400Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Loading SQL update for version 1.0.5
2019-12-24T01:07:35.800289900Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: DB SQL Update 1.0.5 finished
2019-12-24T01:07:35.802117700Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Version in DB updated to: 1.0.5
2019-12-24T01:07:35.802554900Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Loading SQL update for version 1.0.7
2019-12-24T01:07:35.804155700Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: DB SQL Update 1.0.7 finished
2019-12-24T01:07:35.806757900Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Version in DB updated to: 1.0.7
2019-12-24T01:07:35.807421200Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Loading SQL update for version 1.9.0
2019-12-24T01:07:35.809219500Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: DB SQL Update 1.9.0 finished
2019-12-24T01:07:35.811268100Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Version in DB updated to: 1.9.0
2019-12-24T01:07:35.811811900Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Loading SQL update for version 1.9.1
2019-12-24T01:07:35.813294100Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: DB SQL Update 1.9.1 finished
2019-12-24T01:07:35.815258000Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Version in DB updated to: 1.9.1
2019-12-24T01:07:35.815738000Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Loading SQL update for version 1.9.2
2019-12-24T01:07:35.834967900Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: DB SQL Update 1.9.2 finished
2019-12-24T01:07:35.836728400Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Version in DB updated to: 1.9.2
2019-12-24T01:07:35.837102800Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Loading SQL update for version 1.9.3
2019-12-24T01:07:35.847266600Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: DB SQL Update 1.9.3 finished
2019-12-24T01:07:35.849420300Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Version in DB updated to: 1.9.3
2019-12-24T01:07:35.849815500Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Loading SQL update for version 1.9.6
2019-12-24T01:07:35.867623200Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: DB SQL Update 1.9.6 finished
2019-12-24T01:07:35.869285700Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Version in DB updated to: 1.9.6
2019-12-24T01:07:35.869706700Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Loading SQL update for version 1.9.8
2019-12-24T01:07:35.877984000Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: DB SQL Update 1.9.8 finished
2019-12-24T01:07:35.880032300Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Version in DB updated to: 1.9.8
2019-12-24T01:07:35.880599000Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Loading SQL update for version 1.16.0
2019-12-24T01:07:35.885746500Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: DB SQL Update 1.16.0 finished
2019-12-24T01:07:35.887479600Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Version in DB updated to: 1.16.0
2019-12-24T01:07:35.887881300Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Loading SQL update for version 1.19.0
2019-12-24T01:07:35.900380400Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: DB SQL Update 1.19.0 finished
2019-12-24T01:07:35.902235400Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Version in DB updated to: 1.19.0
2019-12-24T01:07:35.902654300Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Loading SQL update for version 1.26.0
2019-12-24T01:07:35.921896200Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: DB SQL Update 1.26.0 finished
2019-12-24T01:07:35.923330000Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Version in DB updated to: 1.26.0
2019-12-24T01:07:35.923692400Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Loading SQL update for version 2.0.0-rc3
2019-12-24T01:07:35.928135100Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: DB SQL Update 2.0.0-rc3 finished
2019-12-24T01:07:35.929483900Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Version in DB updated to: 2.0.0-rc3
2019-12-24T01:07:35.929716100Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Loading SQL update for version 2.0.0
2019-12-24T01:07:35.930409500Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: DB SQL Update 2.0.0 finished
2019-12-24T01:07:35.931443300Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Version in DB updated to: 2.0.0
2019-12-24T01:07:35.940258600Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Version in DB updated to: 2.0.4
2019-12-24T01:07:35.940290700Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Updating database was successful.
2019-12-24T01:07:35.940558800Z 19/12/24 01:07:35 INFO db.DatabaseUpdater: Update database done.
2019-12-24T01:07:35.962380800Z 19/12/24 01:07:35 INFO util.Fixtures: User admin created.
2019-12-24T01:07:35.965346400Z 19/12/24 01:07:35 INFO util.Fixtures: Template MAINTENANCE_MESSAGE created.
2019-12-24T01:07:35.965982800Z 19/12/24 01:07:35 INFO util.Fixtures: Template FOOTER created.
2019-12-24T01:07:35.966744700Z 19/12/24 01:07:35 INFO util.Fixtures: Template REGISTER_MAIL created.
2019-12-24T01:07:35.967512900Z 19/12/24 01:07:35 INFO util.Fixtures: Template RETIRE_JOB_MAIL created.
2019-12-24T01:07:35.968129400Z 19/12/24 01:07:35 INFO util.Fixtures: Template RECOVERY_MAIL created.
2019-12-24T01:07:35.988412100Z 19/12/24 01:07:35 INFO jobs.PersistentWorkflowEngine: Init Counters....
2019-12-24T01:07:35.999649800Z 19/12/24 01:07:35 INFO mapred.Main: Starting web server at port 80
2019-12-24T01:07:36.054377800Z 19/12/24 01:07:36 INFO mapred.WebServer: Start CronJobScheduler...
2019-12-24T01:07:36.957029200Z Init HadoopUtil 172.17.0.3:8021
2019-12-24T01:07:38.636040900Z [INFO] Cluster has 1 nodes, 4 map tasks and 4 reduce tasks
2019-12-24T01:07:38.638526800Z [WARN] Docker Binary not found. Docker support disabled.
2019-12-24T01:07:38.638929500Z [WARN] RScript is configured to use Docker, but Docker is not installed.
2019-12-24T01:07:38.639190600Z [WARN] RMarkdown support enabled. Using docker image genepi/r-cran-docker:latest
2019-12-24T01:07:38.640237300Z [WARN] Nextflow Binary not found. Nextflow support disabled.
2019-12-24T01:07:38.640267000Z
2019-12-24T01:07:38.640291100Z Server is running on http://localhost:80
2019-12-24T01:07:38.640314000Z
2019-12-24T01:07:38.640336600Z Please press ctrl-c to stop.
(base) liezls-mbp:~ lie$ docker logs --timestamps d8ef75fbf671
2019-12-24T00:51:34.937809200Z
2019-12-24T00:51:34.937886800Z Cloudgene 2.0.3
2019-12-24T00:51:34.937904100Z http://www.cloudgene.io
2019-12-24T00:51:34.937926000Z (c) 2009-2019 Lukas Forer and Sebastian Schoenherr
2019-12-24T00:51:34.957889000Z Built by null on null
2019-12-24T00:51:34.958360400Z Built by null on null
2019-12-24T00:51:34.958414800Z
2019-12-24T00:51:35.947901000Z SLF4J: Class path contains multiple SLF4J bindings.
2019-12-24T00:51:35.947934700Z SLF4J: Found binding in [jar:file:/opt/cloudgene/lib/slf4j-log4j12-1.6.1.jar!/org/slf4j/impl/StaticLoggerBinder.class]
2019-12-24T00:51:35.947972400Z SLF4J: Found binding in [jar:file:/usr/lib/zookeeper/lib/slf4j-log4j12-1.7.5.jar!/org/slf4j/impl/StaticLoggerBinder.class]
2019-12-24T00:51:35.947992700Z SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation.
2019-12-24T00:51:35.973778400Z Installing application https://github.com/genepi/imputationserver/releases/download/v1.2.4/imputationserver.zip...
2019-12-24T00:51:41.943769600Z [OK] Application installed:
2019-12-24T00:51:41.943823000Z
2019-12-24T00:51:41.944476800Z Installing application https://imputationserver.sph.umich.edu/static/downloads/releases/hapmap2-2.0.0.zip...
2019-12-24T00:52:25.031936100Z [OK] Application installed:
2019-12-24T00:52:25.031979100Z
2019-12-24T00:52:25.097104300Z set amount cores to 4
2019-12-24T00:52:25.097136900Z set hostname to 172.17.0.2
2019-12-24T00:52:25.103720900Z No HDFS folder in data folder. Format Namenode...
2019-12-24T00:52:26.058143200Z 19/12/24 00:52:26 INFO namenode.NameNode: STARTUP_MSG:
2019-12-24T00:52:26.058186900Z /************************************************************
2019-12-24T00:52:26.058207500Z STARTUP_MSG: Starting NameNode
2019-12-24T00:52:26.058229400Z STARTUP_MSG: user = hdfs
2019-12-24T00:52:26.058250900Z STARTUP_MSG: host = d8ef75fbf671/172.17.0.2
2019-12-24T00:52:26.058272400Z STARTUP_MSG: args = [-format]
2019-12-24T00:52:26.058293700Z STARTUP_MSG: version = 2.6.0-cdh5.14.0
2019-12-24T00:52:26.058616100Z STARTUP_MSG: classpath = /etc/hadoop/conf:/usr/lib/hadoop/lib/httpclient-4.2.5.jar:/usr/lib/hadoop/lib/jasper-runtime-5.5.23.jar:/usr/lib/hadoop/lib/commons-el-1.0.jar:/usr/lib/hadoop/lib/jaxb-api-2.2.2.jar:/usr/lib/hadoop/lib/commons-httpclient-3.1.jar:/usr/lib/hadoop/lib/stax-api-1.0-2.jar:/usr/lib/hadoop/lib/hamcrest-core-1.3.jar:/usr/lib/hadoop/lib/xz-1.0.jar:/usr/lib/hadoop/lib/jsp-api-2.1.jar:/usr/lib/hadoop/lib/commons-codec-1.4.jar:/usr/lib/hadoop/lib/jersey-json-1.9.jar:/usr/lib/hadoop/lib/logredactor-1.0.3.jar:/usr/lib/hadoop/lib/servlet-api-2.5.jar:/usr/lib/hadoop/lib/commons-configuration-1.6.jar:/usr/lib/hadoop/lib/azure-data-lake-store-sdk-2.2.3.jar:/usr/lib/hadoop/lib/avro.jar:/usr/lib/hadoop/lib/jsr305-3.0.0.jar:/usr/lib/hadoop/lib/commons-io-2.4.jar:/usr/lib/hadoop/lib/commons-logging-1.1.3.jar:/usr/lib/hadoop/lib/jasper-compiler-5.5.23.jar:/usr/lib/hadoop/lib/activation-1.1.jar:/usr/lib/hadoop/lib/commons-beanutils-1.9.2.jar:/usr/lib/hadoop/lib/curator-client-2.7.1.jar:/usr/lib/hadoop/lib/commons-digester-1.8.jar:/usr/lib/hadoop/lib/xmlenc-0.52.jar:/usr/lib/hadoop/lib/htrace-core4-4.0.1-incubating.jar:/usr/lib/hadoop/lib/paranamer-2.3.jar:/usr/lib/hadoop/lib/apacheds-i18n-2.0.0-M15.jar:/usr/lib/hadoop/lib/jackson-jaxrs-1.8.8.jar:/usr/lib/hadoop/lib/aws-java-sdk-bundle-1.11.134.jar:/usr/lib/hadoop/lib/asm-3.2.jar:/usr/lib/hadoop/lib/gson-2.2.4.jar:/usr/lib/hadoop/lib/commons-cli-1.2.jar:/usr/lib/hadoop/lib/jsch-0.1.42.jar:/usr/lib/hadoop/lib/jackson-xc-1.8.8.jar:/usr/lib/hadoop/lib/junit-4.11.jar:/usr/lib/hadoop/lib/api-util-1.0.0-M20.jar:/usr/lib/hadoop/lib/java-xmlbuilder-0.4.jar:/usr/lib/hadoop/lib/jetty-6.1.26.cloudera.4.jar:/usr/lib/hadoop/lib/commons-math3-3.1.1.jar:/usr/lib/hadoop/lib/zookeeper.jar:/usr/lib/hadoop/lib/commons-compress-1.4.1.jar:/usr/lib/hadoop/lib/curator-recipes-2.7.1.jar:/usr/lib/hadoop/lib/netty-3.10.5.Final.jar:/usr/lib/hadoop/lib/curator-framework-2.7.1.jar:/usr/lib/hadoop/lib/commons-lang-2.6.jar:/usr/lib/hadoop/lib/slf4j-log4j12.jar:/usr/lib/hadoop/lib/commons-beanutils-core-1.8.0.jar:/usr/lib/hadoop/lib/log4j-1.2.17.jar:/usr/lib/hadoop/lib/jersey-core-1.9.jar:/usr/lib/hadoop/lib/guava-11.0.2.jar:/usr/lib/hadoop/lib/apacheds-kerberos-codec-2.0.0-M15.jar:/usr/lib/hadoop/lib/jettison-1.1.jar:/usr/lib/hadoop/lib/jets3t-0.9.0.jar:/usr/lib/hadoop/lib/jersey-server-1.9.jar:/usr/lib/hadoop/lib/jaxb-impl-2.2.3-1.jar:/usr/lib/hadoop/lib/commons-net-3.1.jar:/usr/lib/hadoop/lib/slf4j-api-1.7.5.jar:/usr/lib/hadoop/lib/httpcore-4.2.5.jar:/usr/lib/hadoop/lib/snappy-java-1.0.4.1.jar:/usr/lib/hadoop/lib/jetty-util-6.1.26.cloudera.4.jar:/usr/lib/hadoop/lib/api-asn1-api-1.0.0-M20.jar:/usr/lib/hadoop/lib/mockito-all-1.8.5.jar:/usr/lib/hadoop/lib/commons-collections-3.2.2.jar:/usr/lib/hadoop/lib/protobuf-java-2.5.0.jar:/usr/lib/hadoop/.//parquet-hadoop.jar:/usr/lib/hadoop/.//hadoop-azure-datalake-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop/.//hadoop-nfs-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop/.//parquet-encoding.jar:/usr/lib/hadoop/.//parquet-column.jar:/usr/lib/hadoop/.//hadoop-common-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop/.//parquet-avro.jar:/usr/lib/hadoop/.//parquet-format.jar:/usr/lib/hadoop/.//parquet-format-sources.jar:/usr/lib/hadoop/.//parquet-format-javadoc.jar:/usr/lib/hadoop/.//parquet-cascading.jar:/usr/lib/hadoop/.//parquet-hadoop-bundle.jar:/usr/lib/hadoop/.//parquet-tools.jar:/usr/lib/hadoop/.//parquet-common.jar:/usr/lib/hadoop/.//hadoop-common-2.6.0-cdh5.14.0-tests.jar:/usr/lib/hadoop/.//hadoop-aws.jar:/usr/lib/hadoop/.//parquet-thrift.jar:/usr/lib/hadoop/.//parquet-generator.jar:/usr/lib/hadoop/.//hadoop-auth-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop/.//parquet-scala_2.10.jar:/usr/lib/hadoop/.//parquet-pig.jar:/usr/lib/hadoop/.//hadoop-nfs.jar:/usr/lib/hadoop/.//parquet-pig-bundle.jar:/usr/lib/hadoop/.//hadoop-azure-datalake.jar:/usr/lib/hadoop/.//hadoop-annotations-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop/.//hadoop-annotations.jar:/usr/lib/hadoop/.//hadoop-common-tests.jar:/usr/lib/hadoop/.//hadoop-auth.jar:/usr/lib/hadoop/.//parquet-test-hadoop2.jar:/usr/lib/hadoop/.//hadoop-common.jar:/usr/lib/hadoop/.//parquet-protobuf.jar:/usr/lib/hadoop/.//hadoop-aws-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop/.//parquet-jackson.jar:/usr/lib/hadoop/.//parquet-scrooge_2.10.jar:/usr/lib/hadoop-hdfs/./:/usr/lib/hadoop-hdfs/lib/jasper-runtime-5.5.23.jar:/usr/lib/hadoop-hdfs/lib/commons-el-1.0.jar:/usr/lib/hadoop-hdfs/lib/jsp-api-2.1.jar:/usr/lib/hadoop-hdfs/lib/commons-codec-1.4.jar:/usr/lib/hadoop-hdfs/lib/servlet-api-2.5.jar:/usr/lib/hadoop-hdfs/lib/jsr305-3.0.0.jar:/usr/lib/hadoop-hdfs/lib/commons-io-2.4.jar:/usr/lib/hadoop-hdfs/lib/commons-logging-1.1.3.jar:/usr/lib/hadoop-hdfs/lib/xmlenc-0.52.jar:/usr/lib/hadoop-hdfs/lib/htrace-core4-4.0.1-incubating.jar:/usr/lib/hadoop-hdfs/lib/jackson-core-asl-1.8.8.jar:/usr/lib/hadoop-hdfs/lib/leveldbjni-all-1.8.jar:/usr/lib/hadoop-hdfs/lib/asm-3.2.jar:/usr/lib/hadoop-hdfs/lib/commons-cli-1.2.jar:/usr/lib/hadoop-hdfs/lib/jetty-6.1.26.cloudera.4.jar:/usr/lib/hadoop-hdfs/lib/commons-daemon-1.0.13.jar:/usr/lib/hadoop-hdfs/lib/netty-3.10.5.Final.jar:/usr/lib/hadoop-hdfs/lib/commons-lang-2.6.jar:/usr/lib/hadoop-hdfs/lib/log4j-1.2.17.jar:/usr/lib/hadoop-hdfs/lib/jersey-core-1.9.jar:/usr/lib/hadoop-hdfs/lib/guava-11.0.2.jar:/usr/lib/hadoop-hdfs/lib/jackson-mapper-asl-1.8.8.jar:/usr/lib/hadoop-hdfs/lib/jersey-server-1.9.jar:/usr/lib/hadoop-hdfs/lib/xercesImpl-2.9.1.jar:/usr/lib/hadoop-hdfs/lib/xml-apis-1.3.04.jar:/usr/lib/hadoop-hdfs/lib/jetty-util-6.1.26.cloudera.4.jar:/usr/lib/hadoop-hdfs/lib/protobuf-java-2.5.0.jar:/usr/lib/hadoop-hdfs/.//hadoop-hdfs-nfs-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-hdfs/.//hadoop-hdfs-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-hdfs/.//hadoop-hdfs.jar:/usr/lib/hadoop-hdfs/.//hadoop-hdfs-tests.jar:/usr/lib/hadoop-hdfs/.//hadoop-hdfs-2.6.0-cdh5.14.0-tests.jar:/usr/lib/hadoop-hdfs/.//hadoop-hdfs-nfs.jar:/usr/lib/hadoop-yarn/lib/jaxb-api-2.2.2.jar:/usr/lib/hadoop-yarn/lib/aopalliance-1.0.jar:/usr/lib/hadoop-yarn/lib/stax-api-1.0-2.jar:/usr/lib/hadoop-yarn/lib/xz-1.0.jar:/usr/lib/hadoop-yarn/lib/commons-codec-1.4.jar:/usr/lib/hadoop-yarn/lib/jersey-json-1.9.jar:/usr/lib/hadoop-yarn/lib/servlet-api-2.5.jar:/usr/lib/hadoop-yarn/lib/jersey-client-1.9.jar:/usr/lib/hadoop-yarn/lib/jsr305-3.0.0.jar:/usr/lib/hadoop-yarn/lib/commons-io-2.4.jar:/usr/lib/hadoop-yarn/lib/commons-logging-1.1.3.jar:/usr/lib/hadoop-yarn/lib/guice-3.0.jar:/usr/lib/hadoop-yarn/lib/activation-1.1.jar:/usr/lib/hadoop-yarn/lib/jersey-guice-1.9.jar:/usr/lib/hadoop-yarn/lib/jackson-core-asl-1.8.8.jar:/usr/lib/hadoop-yarn/lib/jackson-jaxrs-1.8.8.jar:/usr/lib/hadoop-yarn/lib/leveldbjni-all-1.8.jar:/usr/lib/hadoop-yarn/lib/asm-3.2.jar:/usr/lib/hadoop-yarn/lib/guice-servlet-3.0.jar:/usr/lib/hadoop-yarn/lib/commons-cli-1.2.jar:/usr/lib/hadoop-yarn/lib/jackson-xc-1.8.8.jar:/usr/lib/hadoop-yarn/lib/jline-2.11.jar:/usr/lib/hadoop-yarn/lib/jetty-6.1.26.cloudera.4.jar:/usr/lib/hadoop-yarn/lib/zookeeper.jar:/usr/lib/hadoop-yarn/lib/commons-compress-1.4.1.jar:/usr/lib/hadoop-yarn/lib/commons-lang-2.6.jar:/usr/lib/hadoop-yarn/lib/javax.inject-1.jar:/usr/lib/hadoop-yarn/lib/log4j-1.2.17.jar:/usr/lib/hadoop-yarn/lib/jersey-core-1.9.jar:/usr/lib/hadoop-yarn/lib/guava-11.0.2.jar:/usr/lib/hadoop-yarn/lib/jettison-1.1.jar:/usr/lib/hadoop-yarn/lib/jackson-mapper-asl-1.8.8.jar:/usr/lib/hadoop-yarn/lib/jersey-server-1.9.jar:/usr/lib/hadoop-yarn/lib/jaxb-impl-2.2.3-1.jar:/usr/lib/hadoop-yarn/lib/jetty-util-6.1.26.cloudera.4.jar:/usr/lib/hadoop-yarn/lib/commons-collections-3.2.2.jar:/usr/lib/hadoop-yarn/lib/protobuf-java-2.5.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-registry-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-common.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-tests.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-common-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-common.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-web-proxy.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-api.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-resourcemanager-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-web-proxy-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-tests-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-applicationhistoryservice.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-registry.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-nodemanager-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-applications-distributedshell-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-client.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-applications-unmanaged-am-launcher-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-common-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-applicationhistoryservice-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-nodemanager.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-api-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-applications-unmanaged-am-launcher.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-resourcemanager.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-client-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-applications-distributedshell.jar:/usr/lib/hadoop-0.20-mapreduce/./:/usr/lib/hadoop-0.20-mapreduce/lib/httpclient-4.2.5.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jasper-runtime-5.5.23.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-el-1.0.jar:/usr/lib/hadoop-0.20-mapreduce/lib/joda-time-2.8.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jaxb-api-2.2.2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-httpclient-3.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/stax-api-1.0-2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/xz-1.0.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jsp-api-2.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-codec-1.4.jar:/usr/lib/hadoop-0.20-mapreduce/lib/hsqldb-1.8.0.10.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jersey-json-1.9.jar:/usr/lib/hadoop-0.20-mapreduce/lib/servlet-api-2.5.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-configuration-1.6.jar:/usr/lib/hadoop-0.20-mapreduce/lib/avro.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jsr305-3.0.0.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-io-2.4.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-logging-1.1.3.jar:/usr/lib/hadoop-0.20-mapreduce/lib/netty-all-4.0.23.Final.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jasper-compiler-5.5.23.jar:/usr/lib/hadoop-0.20-mapreduce/lib/activation-1.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-beanutils-1.9.2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/curator-client-2.7.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-digester-1.8.jar:/usr/lib/hadoop-0.20-mapreduce/lib/xmlenc-0.52.jar:/usr/lib/hadoop-0.20-mapreduce/lib/htrace-core4-4.0.1-incubating.jar:/usr/lib/hadoop-0.20-mapreduce/lib/paranamer-2.3.jar:/usr/lib/hadoop-0.20-mapreduce/lib/apacheds-i18n-2.0.0-M15.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jackson-jaxrs-1.8.8.jar:/usr/lib/hadoop-0.20-mapreduce/lib/leveldbjni-all-1.8.jar:/usr/lib/hadoop-0.20-mapreduce/lib/ant-contrib-1.0b3.jar:/usr/lib/hadoop-0.20-mapreduce/lib/aws-java-sdk-bundle-1.11.134.jar:/usr/lib/hadoop-0.20-mapreduce/lib/netty-3.2.2.Final.jar:/usr/lib/hadoop-0.20-mapreduce/lib/asm-3.2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jackson-mapper-asl-1.9.13.jar:/usr/lib/hadoop-0.20-mapreduce/lib/gson-2.2.4.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jackson-annotations-2.2.3.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-cli-1.2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/kfs-0.2.2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jsch-0.1.42.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jackson-xc-1.8.8.jar:/usr/lib/hadoop-0.20-mapreduce/lib/api-util-1.0.0-M20.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jackson-core-asl-1.9.13.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jline-2.11.jar:/usr/lib/hadoop-0.20-mapreduce/lib/java-xmlbuilder-0.4.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jetty-6.1.26.cloudera.4.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-math3-3.1.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/zookeeper.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-compress-1.4.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/curator-recipes-2.7.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jackson-core-2.2.3.jar:/usr/lib/hadoop-0.20-mapreduce/lib/netty-3.10.5.Final.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jackson-databind-2.2.3.jar:/usr/lib/hadoop-0.20-mapreduce/lib/avro-compiler.jar:/usr/lib/hadoop-0.20-mapreduce/lib/curator-framework-2.7.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-lang-2.6.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-beanutils-core-1.8.0.jar:/usr/lib/hadoop-0.20-mapreduce/lib/log4j-1.2.17.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jersey-core-1.9.jar:/usr/lib/hadoop-0.20-mapreduce/lib/guava-11.0.2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/apacheds-kerberos-codec-2.0.0-M15.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jettison-1.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jets3t-0.9.0.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jersey-server-1.9.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jaxb-impl-2.2.3-1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-net-3.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/slf4j-api-1.7.5.jar:/usr/lib/hadoop-0.20-mapreduce/lib/hadoop-fairscheduler-2.6.0-mr1-cdh5.14.0.jar:/usr/lib/hadoop-0.20-mapreduce/lib/httpcore-4.2.5.jar:/usr/lib/hadoop-0.20-mapreduce/lib/xercesImpl-2.9.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/xml-apis-1.3.04.jar:/usr/lib/hadoop-0.20-mapreduce/lib/snappy-java-1.0.4.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jetty-util-6.1.26.cloudera.4.jar:/usr/lib/hadoop-0.20-mapreduce/lib/api-asn1-api-1.0.0-M20.jar:/usr/lib/hadoop-0.20-mapreduce/lib/mockito-all-1.8.5.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-collections-3.2.2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/protobuf-java-2.5.0.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-tools-2.6.0-mr1-cdh5.14.0.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-ant-2.6.0-mr1-cdh5.14.0.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-test-mr1.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-tools-mr1.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-core-2.6.0-mr1-cdh5.14.0.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-examples.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-examples-2.6.0-mr1-cdh5.14.0.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-test-2.6.0-mr1-cdh5.14.0.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-core-mr1.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-ant-mr1.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-examples-mr1.jar
2019-12-24T00:52:26.058689200Z STARTUP_MSG: build = http://github.com/cloudera/hadoop -r 9b197d35839383c798c618ba917ccaa196a17699 ; compiled by 'jenkins' on 2018-01-06T21:40Z
2019-12-24T00:52:26.058712300Z STARTUP_MSG: java = 1.8.0_161
2019-12-24T00:52:26.058733900Z ************************************************************/
2019-12-24T00:52:26.071350700Z 19/12/24 00:52:26 INFO namenode.NameNode: registered UNIX signal handlers for [TERM, HUP, INT]
2019-12-24T00:52:26.077120700Z 19/12/24 00:52:26 INFO namenode.NameNode: createNameNode [-format]
2019-12-24T00:52:26.802038600Z Formatting using clusterid: CID-f20dcbb4-2062-491f-bb39-6c141c6d0fee
2019-12-24T00:52:26.858921000Z 19/12/24 00:52:26 INFO namenode.FSEditLog: Edit logging is async:true
2019-12-24T00:52:26.885097500Z 19/12/24 00:52:26 INFO namenode.FSNamesystem: No KeyProvider found.
2019-12-24T00:52:26.933874800Z 19/12/24 00:52:26 INFO namenode.FSNamesystem: fsLock is fair: true
2019-12-24T00:52:27.030490000Z 19/12/24 00:52:27 INFO blockmanagement.DatanodeManager: dfs.block.invalidate.limit=1000
2019-12-24T00:52:27.030553500Z 19/12/24 00:52:27 INFO blockmanagement.DatanodeManager: dfs.namenode.datanode.registration.ip-hostname-check=true
2019-12-24T00:52:27.032204300Z 19/12/24 00:52:27 INFO blockmanagement.BlockManager: dfs.namenode.startup.delay.block.deletion.sec is set to 000:00:00:00.000
2019-12-24T00:52:27.032605600Z 19/12/24 00:52:27 INFO blockmanagement.BlockManager: The block deletion will start around 2019 Dec 24 00:52:27
2019-12-24T00:52:27.035060800Z 19/12/24 00:52:27 INFO util.GSet: Computing capacity for map BlocksMap
2019-12-24T00:52:27.035082500Z 19/12/24 00:52:27 INFO util.GSet: VM type = 64-bit
2019-12-24T00:52:27.038449700Z 19/12/24 00:52:27 INFO util.GSet: 2.0% max memory 889 MB = 17.8 MB
2019-12-24T00:52:27.038602100Z 19/12/24 00:52:27 INFO util.GSet: capacity = 2^21 = 2097152 entries
2019-12-24T00:52:27.063335900Z 19/12/24 00:52:27 INFO blockmanagement.BlockManager: dfs.block.access.token.enable=false
2019-12-24T00:52:27.066807000Z 19/12/24 00:52:27 INFO blockmanagement.BlockManager: defaultReplication = 1
2019-12-24T00:52:27.066836100Z 19/12/24 00:52:27 INFO blockmanagement.BlockManager: maxReplication = 512
2019-12-24T00:52:27.067186000Z 19/12/24 00:52:27 INFO blockmanagement.BlockManager: minReplication = 1
2019-12-24T00:52:27.067234200Z 19/12/24 00:52:27 INFO blockmanagement.BlockManager: maxReplicationStreams = 2
2019-12-24T00:52:27.067489500Z 19/12/24 00:52:27 INFO blockmanagement.BlockManager: replicationRecheckInterval = 3000
2019-12-24T00:52:27.067513700Z 19/12/24 00:52:27 INFO blockmanagement.BlockManager: encryptDataTransfer = false
2019-12-24T00:52:27.067672200Z 19/12/24 00:52:27 INFO blockmanagement.BlockManager: maxNumBlocksToLog = 1000
2019-12-24T00:52:27.084976800Z 19/12/24 00:52:27 INFO namenode.FSNamesystem: fsOwner = hdfs (auth:SIMPLE)
2019-12-24T00:52:27.085023800Z 19/12/24 00:52:27 INFO namenode.FSNamesystem: supergroup = supergroup
2019-12-24T00:52:27.085221800Z 19/12/24 00:52:27 INFO namenode.FSNamesystem: isPermissionEnabled = true
2019-12-24T00:52:27.085599500Z 19/12/24 00:52:27 INFO namenode.FSNamesystem: HA Enabled: false
2019-12-24T00:52:27.090579100Z 19/12/24 00:52:27 INFO namenode.FSNamesystem: Append Enabled: true
2019-12-24T00:52:27.383050300Z 19/12/24 00:52:27 INFO util.GSet: Computing capacity for map INodeMap
2019-12-24T00:52:27.383088500Z 19/12/24 00:52:27 INFO util.GSet: VM type = 64-bit
2019-12-24T00:52:27.383587100Z 19/12/24 00:52:27 INFO util.GSet: 1.0% max memory 889 MB = 8.9 MB
2019-12-24T00:52:27.383616200Z 19/12/24 00:52:27 INFO util.GSet: capacity = 2^20 = 1048576 entries
2019-12-24T00:52:27.385486900Z 19/12/24 00:52:27 INFO namenode.FSDirectory: POSIX ACL inheritance enabled? false
2019-12-24T00:52:27.385770900Z 19/12/24 00:52:27 INFO namenode.NameNode: Caching file names occuring more than 10 times
2019-12-24T00:52:27.395018500Z 19/12/24 00:52:27 INFO snapshot.SnapshotManager: Loaded config captureOpenFiles: false, skipCaptureAccessTimeOnlyChange: false, snapshotDiffAllowSnapRootDescendant: true
2019-12-24T00:52:27.401397300Z 19/12/24 00:52:27 INFO util.GSet: Computing capacity for map cachedBlocks
2019-12-24T00:52:27.401808100Z 19/12/24 00:52:27 INFO util.GSet: VM type = 64-bit
2019-12-24T00:52:27.402114400Z 19/12/24 00:52:27 INFO util.GSet: 0.25% max memory 889 MB = 2.2 MB
2019-12-24T00:52:27.402140900Z 19/12/24 00:52:27 INFO util.GSet: capacity = 2^18 = 262144 entries
2019-12-24T00:52:27.404291900Z 19/12/24 00:52:27 INFO namenode.FSNamesystem: dfs.namenode.safemode.threshold-pct = 0.9990000128746033
2019-12-24T00:52:27.404518000Z 19/12/24 00:52:27 INFO namenode.FSNamesystem: dfs.namenode.safemode.min.datanodes = 0
2019-12-24T00:52:27.404543400Z 19/12/24 00:52:27 INFO namenode.FSNamesystem: dfs.namenode.safemode.extension = 0
2019-12-24T00:52:27.410234900Z 19/12/24 00:52:27 INFO metrics.TopMetrics: NNTop conf: dfs.namenode.top.window.num.buckets = 10
2019-12-24T00:52:27.410441500Z 19/12/24 00:52:27 INFO metrics.TopMetrics: NNTop conf: dfs.namenode.top.num.users = 10
2019-12-24T00:52:27.410505600Z 19/12/24 00:52:27 INFO metrics.TopMetrics: NNTop conf: dfs.namenode.top.windows.minutes = 1,5,25
2019-12-24T00:52:27.418715600Z 19/12/24 00:52:27 INFO namenode.FSNamesystem: Retry cache on namenode is enabled
2019-12-24T00:52:27.418757300Z 19/12/24 00:52:27 INFO namenode.FSNamesystem: Retry cache will use 0.03 of total heap and retry cache entry expiry time is 600000 millis
2019-12-24T00:52:27.424455700Z 19/12/24 00:52:27 INFO util.GSet: Computing capacity for map NameNodeRetryCache
2019-12-24T00:52:27.424491100Z 19/12/24 00:52:27 INFO util.GSet: VM type = 64-bit
2019-12-24T00:52:27.424699400Z 19/12/24 00:52:27 INFO util.GSet: 0.029999999329447746% max memory 889 MB = 273.1 KB
2019-12-24T00:52:27.424749600Z 19/12/24 00:52:27 INFO util.GSet: capacity = 2^15 = 32768 entries
2019-12-24T00:52:27.466566100Z 19/12/24 00:52:27 INFO namenode.FSNamesystem: ACLs enabled? false
2019-12-24T00:52:27.466599800Z 19/12/24 00:52:27 INFO namenode.FSNamesystem: XAttrs enabled? true
2019-12-24T00:52:27.466646500Z 19/12/24 00:52:27 INFO namenode.FSNamesystem: Maximum size of an xattr: 16384
2019-12-24T00:52:27.520395700Z 19/12/24 00:52:27 INFO namenode.FSImage: Allocated new BlockPoolId: BP-1518669649-172.17.0.2-1577148747489
2019-12-24T00:52:27.542832300Z 19/12/24 00:52:27 INFO common.Storage: Storage directory /data/hadoop/dfs/name has been successfully formatted.
2019-12-24T00:52:27.565602500Z 19/12/24 00:52:27 INFO namenode.FSImageFormatProtobuf: Saving image file /data/hadoop/dfs/name/current/fsimage.ckpt_0000000000000000000 using no compression
2019-12-24T00:52:27.671540900Z 19/12/24 00:52:27 INFO namenode.FSImageFormatProtobuf: Image file /data/hadoop/dfs/name/current/fsimage.ckpt_0000000000000000000 of size 321 bytes saved in 0 seconds.
2019-12-24T00:52:27.728112600Z 19/12/24 00:52:27 INFO namenode.NNStorageRetentionManager: Going to retain 1 images with txid >= 0
2019-12-24T00:52:27.738832300Z 19/12/24 00:52:27 INFO util.ExitUtil: Exiting with status 0
2019-12-24T00:52:27.741921600Z 19/12/24 00:52:27 INFO namenode.NameNode: SHUTDOWN_MSG:
2019-12-24T00:52:27.741993300Z /************************************************************
2019-12-24T00:52:27.742011500Z SHUTDOWN_MSG: Shutting down NameNode at d8ef75fbf671/172.17.0.2
2019-12-24T00:52:27.742029000Z ************************************************************/
2019-12-24T00:52:27.849894800Z starting datanode, logging to /var/log/hadoop-hdfs/hadoop-hdfs-datanode-d8ef75fbf671.out
2019-12-24T00:52:36.842992700Z * Started Hadoop datanode (hadoop-hdfs-datanode):
2019-12-24T00:52:36.902403900Z starting namenode, logging to /var/log/hadoop-hdfs/hadoop-hdfs-namenode-d8ef75fbf671.out
2019-12-24T00:52:45.922787100Z * Started Hadoop namenode:
2019-12-24T00:52:45.984256200Z starting secondarynamenode, logging to /var/log/hadoop-hdfs/hadoop-hdfs-secondarynamenode-d8ef75fbf671.out
2019-12-24T00:52:55.004676100Z * Started Hadoop secondarynamenode:
2019-12-24T00:52:56.154712500Z rmr: DEPRECATED: Please use 'rm -r' instead.
2019-12-24T00:52:57.510880700Z rmr: `/var/lib/hadoop-hdfs/cache/mapred/mapred/staging': No such file or directory
2019-12-24T00:52:57.995774200Z + su -s /bin/bash hdfs -c '/usr/bin/hadoop fs -mkdir -p /tmp'
2019-12-24T00:53:00.641564100Z + su -s /bin/bash hdfs -c '/usr/bin/hadoop fs -chmod -R 1777 /tmp'
2019-12-24T00:53:03.378856900Z + su -s /bin/bash hdfs -c '/usr/bin/hadoop fs -mkdir -p /var'
2019-12-24T00:53:06.115560000Z + su -s /bin/bash hdfs -c '/usr/bin/hadoop fs -mkdir -p /var/log'
2019-12-24T00:53:09.456462600Z + su -s /bin/bash hdfs -c '/usr/bin/hadoop fs -chmod -R 1775 /var/log'
2019-12-24T00:53:12.575886300Z + su -s /bin/bash hdfs -c '/usr/bin/hadoop fs -mkdir -p /var/lib/hadoop-hdfs/cache/mapred/mapred/staging'
2019-12-24T00:53:15.282896600Z + su -s /bin/bash hdfs -c '/usr/bin/hadoop fs -chmod 1777 /var/lib/hadoop-hdfs/cache/mapred/mapred/staging'
2019-12-24T00:53:17.838489000Z + su -s /bin/bash hdfs -c '/usr/bin/hadoop fs -chown -R mapred /var/lib/hadoop-hdfs/cache/mapred'
2019-12-24T00:53:20.521772200Z + sudo -u hdfs hadoop fs -mkdir -p /user/cloudgene
2019-12-24T00:53:23.097404700Z + sudo -u hdfs hadoop fs -chown cloudgene /user/cloudgene
2019-12-24T00:53:31.637115300Z /usr/lib/hadoop-0.20-mapreduce/hadoop-core-2.6.0-mr1-cdh5.14.0.jar
2019-12-24T00:53:31.637153600Z /usr/lib/hadoop-0.20-mapreduce/hadoop-core-mr1.jar
2019-12-24T00:53:31.643964300Z starting jobtracker, logging to /var/log/hadoop-0.20-mapreduce/hadoop-hadoop-jobtracker-d8ef75fbf671.out
2019-12-24T00:53:31.653952200Z /usr/lib/hadoop-0.20-mapreduce/hadoop-core-2.6.0-mr1-cdh5.14.0.jar
2019-12-24T00:53:31.653989200Z /usr/lib/hadoop-0.20-mapreduce/hadoop-core-mr1.jar
2019-12-24T00:53:38.086410800Z * Started Hadoop jobtracker:
2019-12-24T00:53:38.148483400Z /usr/lib/hadoop-0.20-mapreduce/hadoop-core-2.6.0-mr1-cdh5.14.0.jar
2019-12-24T00:53:38.148519400Z /usr/lib/hadoop-0.20-mapreduce/hadoop-core-mr1.jar
2019-12-24T00:53:38.154424200Z starting tasktracker, logging to /var/log/hadoop-0.20-mapreduce/hadoop-hadoop-tasktracker-d8ef75fbf671.out
2019-12-24T00:53:38.164259500Z /usr/lib/hadoop-0.20-mapreduce/hadoop-core-2.6.0-mr1-cdh5.14.0.jar
2019-12-24T00:53:38.164318400Z /usr/lib/hadoop-0.20-mapreduce/hadoop-core-mr1.jar
2019-12-24T00:53:44.593339800Z * Started Hadoop tasktracker:
2019-12-24T00:53:44.597516100Z Congratulations! Cluster is running on 172.17.0.2
2019-12-24T00:53:44.923485700Z
2019-12-24T00:53:44.923539600Z Cloudgene 2.0.3
2019-12-24T00:53:44.923566600Z http://www.cloudgene.io
2019-12-24T00:53:44.923590000Z (c) 2009-2019 Lukas Forer and Sebastian Schoenherr
2019-12-24T00:53:44.933189900Z Built by null on null
2019-12-24T00:53:44.933713300Z Built by null on null
2019-12-24T00:53:44.933736100Z
2019-12-24T00:53:45.776952300Z SLF4J: Class path contains multiple SLF4J bindings.
2019-12-24T00:53:45.777011700Z SLF4J: Found binding in [jar:file:/opt/cloudgene/lib/slf4j-log4j12-1.6.1.jar!/org/slf4j/impl/StaticLoggerBinder.class]
2019-12-24T00:53:45.777046100Z SLF4J: Found binding in [jar:file:/usr/lib/zookeeper/lib/slf4j-log4j12-1.7.5.jar!/org/slf4j/impl/StaticLoggerBinder.class]
2019-12-24T00:53:45.777077400Z SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation.
2019-12-24T00:53:46.034853000Z Use Haddop configuration folder /etc/hadoop/conf
2019-12-24T00:53:46.344258600Z 19/12/24 00:53:46 INFO mapred.Main: Cloudgene 2.0.3
2019-12-24T00:53:46.344975000Z 19/12/24 00:53:46 INFO mapred.Main: Built by null on null
2019-12-24T00:53:46.406703900Z 19/12/24 00:53:46 INFO mapred.Main: Establish connection successful
2019-12-24T00:53:46.943880500Z 19/12/24 00:53:46 INFO mapred.Main: Database needs update.
2019-12-24T00:53:47.101803100Z 19/12/24 00:53:47 INFO util.Fixtures: User admin created.
2019-12-24T00:53:47.105794000Z 19/12/24 00:53:47 INFO util.Fixtures: Template MAINTENANCE_MESSAGE created.
2019-12-24T00:53:47.106545700Z 19/12/24 00:53:47 INFO util.Fixtures: Template FOOTER created.
2019-12-24T00:53:47.107250000Z 19/12/24 00:53:47 INFO util.Fixtures: Template REGISTER_MAIL created.
2019-12-24T00:53:47.107649900Z 19/12/24 00:53:47 INFO util.Fixtures: Template RETIRE_JOB_MAIL created.
2019-12-24T00:53:47.108333200Z 19/12/24 00:53:47 INFO util.Fixtures: Template RECOVERY_MAIL created.
2019-12-24T00:53:47.126286200Z 19/12/24 00:53:47 INFO jobs.PersistentWorkflowEngine: Init Counters....
2019-12-24T00:53:47.143498700Z 19/12/24 00:53:47 INFO mapred.Main: Starting web server at port 80
2019-12-24T00:53:47.216471300Z 19/12/24 00:53:47 INFO mapred.WebServer: Start CronJobScheduler...
2019-12-24T00:53:48.235461300Z Init HadoopUtil 172.17.0.2:8021
2019-12-24T00:53:48.628810200Z 19/12/24 00:53:48 INFO LogService: 2019-12-24 00:53:48 172.17.0.1 - 172.17.0.2 80 GET / - 301 0 0 9 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 -
2019-12-24T00:53:48.872759900Z 19/12/24 00:53:48 INFO LogService: 2019-12-24 00:53:48 172.17.0.1 - 172.17.0.2 80 GET /index.html - 200 - 0 217 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 -
2019-12-24T00:53:48.968985100Z 19/12/24 00:53:48 INFO LogService: 2019-12-24 00:53:48 172.17.0.1 - 172.17.0.2 80 GET /dist/bundles/cloudgene/index.js - 200 368876 0 21 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:53:48.971756300Z 19/12/24 00:53:48 INFO LogService: 2019-12-24 00:53:48 172.17.0.1 - 172.17.0.2 80 GET /assets/css/loader.css - 200 847 0 29 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:53:49.030954000Z 19/12/24 00:53:49 INFO LogService: 2019-12-24 00:53:49 172.17.0.1 - 172.17.0.2 80 GET /dist/bundles/admin-index.js - 200 533885 02 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:53:49.231240100Z 19/12/24 00:53:49 INFO LogService: 2019-12-24 00:53:49 172.17.0.1 - 172.17.0.2 80 GET /dist/bundles/admin-index.css - 200 194996 04 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:53:49.668593400Z 19/12/24 00:53:49 INFO LogService: 2019-12-24 00:53:49 172.17.0.1 - 172.17.0.2 80 GET /api/v2/server - 200 484 0 198 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:53:49.730290100Z 19/12/24 00:53:49 INFO LogService: 2019-12-24 00:53:49 172.17.0.1 - 172.17.0.2 80 GET /favicon.ico - 404 439 0 11 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:53:49.931976800Z 19/12/24 00:53:49 INFO LogService: 2019-12-24 00:53:49 172.17.0.1 - 172.17.0.2 80 GET /static/home.stache - 200 7036 0 9http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:53:49.991308900Z 19/12/24 00:53:49 INFO LogService: 2019-12-24 00:53:49 172.17.0.1 - 172.17.0.2 80 GET /static/images/docker.svg - 200 2592 03 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:53:50.004187800Z 19/12/24 00:53:50 INFO LogService: 2019-12-24 00:53:50 172.17.0.1 - 172.17.0.2 80 GET /static/images/impute.png - 200 2352 010 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:53:50.006829200Z 19/12/24 00:53:50 INFO LogService: 2019-12-24 00:53:50 172.17.0.1 - 172.17.0.2 80 GET /static/images/up-cloud.png - 200 3187 012 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:53:50.016278800Z 19/12/24 00:53:50 INFO LogService: 2019-12-24 00:53:50 172.17.0.1 - 172.17.0.2 80 GET /api/v2/server/counters - 200 51 0 29 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:53:50.020813300Z 19/12/24 00:53:50 INFO LogService: 2019-12-24 00:53:50 172.17.0.1 - 172.17.0.2 80 GET /static/images/secure.png - 200 3034 02 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:53:50.026153600Z 19/12/24 00:53:50 INFO LogService: 2019-12-24 00:53:50 172.17.0.1 - 172.17.0.2 80 GET /static/images/down-cloud.png - 200 3029 02 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:53:50.029808200Z 19/12/24 00:53:50 INFO LogService: 2019-12-24 00:53:50 172.17.0.1 - 172.17.0.2 80 GET /static/images/hosting.png - 200 5335 05 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:53:50.033710300Z 19/12/24 00:53:50 INFO LogService: 2019-12-24 00:53:50 172.17.0.1 - 172.17.0.2 80 GET /static/images/control.png - 200 3034 01 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:53:50.091101700Z 19/12/24 00:53:50 INFO LogService: 2019-12-24 00:53:50 172.17.0.1 - 172.17.0.2 80 GET /dist/node_modules/@fortawesome/fontawesome-free/webfonts/fa-regular-400.woff2 - 200 14868 0 3 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/dist/bundles/admin-index.css
2019-12-24T00:53:50.641020300Z [INFO] Cluster has 1 nodes, 4 map tasks and 4 reduce tasks
2019-12-24T00:53:50.643081500Z [WARN] Docker Binary not found. Docker support disabled.
2019-12-24T00:53:50.643611100Z [WARN] RScript is configured to use Docker, but Docker is not installed.
2019-12-24T00:53:50.644068000Z [WARN] RMarkdown support enabled. Using docker image genepi/r-cran-docker:latest
2019-12-24T00:53:50.645581700Z [WARN] Nextflow Binary not found. Nextflow support disabled.
2019-12-24T00:53:50.645632800Z
2019-12-24T00:53:50.645682400Z Server is running on http://localhost:80
2019-12-24T00:53:50.645731800Z
2019-12-24T00:53:50.645841500Z Please press ctrl-c to stop.
2019-12-24T00:53:55.515607100Z 19/12/24 00:53:55 INFO LogService: 2019-12-24 00:53:55 172.17.0.1 - 172.17.0.2 80 GET /index.html - 200 - 0 15 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:53:55.942186700Z 19/12/24 00:53:55 INFO LogService: 2019-12-24 00:53:55 172.17.0.1 - 172.17.0.2 80 GET /api/v2/server - 200 484 0 3 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:54:00.732045000Z 19/12/24 00:54:00 INFO LogService: 2019-12-24 00:54:00 172.17.0.1 - 172.17.0.2 80 POST /login - 200 86 59 13 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:54:06.133228500Z 19/12/24 00:54:06 INFO LogService: 2019-12-24 00:54:06 172.17.0.1 - 172.17.0.2 80 POST /login - 200 - 43 143 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:54:06.171113400Z 19/12/24 00:54:06 INFO LogService: 2019-12-24 00:54:06 172.17.0.1 - 172.17.0.2 80 GET /index.html - 200 - 0 5 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:54:06.690159900Z 19/12/24 00:54:06 INFO LogService: 2019-12-24 00:54:06 172.17.0.1 - 172.17.0.2 80 GET /api/v2/server - 200 647 0 31 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:54:06.732220200Z 19/12/24 00:54:06 INFO LogService: 2019-12-24 00:54:06 172.17.0.1 - 172.17.0.2 80 GET /dist/node_modules/@fortawesome/fontawesome-free/webfonts/fa-solid-900.woff2 - 200 67400 0 1 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/dist/bundles/admin-index.css
2019-12-24T00:54:06.745498100Z 19/12/24 00:54:06 INFO LogService: 2019-12-24 00:54:06 172.17.0.1 - 172.17.0.2 80 GET /api/v2/server/counters - 200 51 0 1http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:55:35.440717900Z populations
2019-12-24T00:55:35.457019500Z 19/12/24 00:55:35 INFO LogService: 2019-12-24 00:55:35 172.17.0.1 - 172.17.0.2 80 GET /api/v2/server/apps/imputationserver%401.2.4 - 200 3548 0 32 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:56:01.890498200Z 19/12/24 00:56:01 INFO queue.Queue: ShortTimeQueue: Submit job...
2019-12-24T00:56:01.890859300Z 19/12/24 00:56:01 INFO jobs.WorkflowEngine: Start input validation for job job-20191224-005601-620...
2019-12-24T00:56:01.891338100Z 19/12/24 00:56:01 INFO LogService: 2019-12-24 00:56:01 172.17.0.1 - 172.17.0.2 80 POST /api/v2/jobs/submit/imputationserver@1.2.4 - 200 - 90944 282 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:56:01.891371800Z 19/12/24 00:56:01 INFO jobs.AbstractJob: Job job-20191224-005601-620: executing installation...
2019-12-24T00:56:01.946788900Z 19/12/24 00:56:01 INFO jobs.CloudgeneJob: Job job-20191224-005601-620: executing installation for imputationserver@1.2.4...
2019-12-24T00:56:01.986806800Z 19/12/24 00:56:01 INFO LogService: 2019-12-24 00:56:01 172.17.0.1 - 172.17.0.2 80 GET /api/v2/jobs/job-20191224-005601-620 - 200 9364 0 58 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:56:02.067034600Z 19/12/24 00:56:02 INFO LogService: 2019-12-24 00:56:02 172.17.0.1 - 172.17.0.2 80 GET /api/v2/jobs/job-20191224-005601-620/status - 200 9345 0 48 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:56:02.080932100Z Import data from /data/apps/imputationserver/1.2.4/bin to cloudgene/apps/imputationserver@1.2.4/1.2.4/bin...
2019-12-24T00:56:03.174716000Z 19/12/24 00:56:03 INFO jobs.CloudgeneJob: Installation of application imputationserver@1.2.4 finished.
2019-12-24T00:56:03.175756300Z 19/12/24 00:56:03 INFO jobs.CloudgeneJob: Job job-20191224-005601-620: executing installation for hapmap-2@2.0.0...
2019-12-24T00:56:03.244902300Z Import data from /data/apps/hapmap-2/2.0.0/bcfs to cloudgene/apps/hapmap-2@2.0.0/2.0.0/bcfs...
2019-12-24T00:56:07.076094900Z 19/12/24 00:56:07 INFO LogService: 2019-12-24 00:56:07 172.17.0.1 - 172.17.0.2 80 GET /api/v2/jobs/job-20191224-005601-620/status - 200 9345 0 19 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:56:07.485076000Z Import data from /data/apps/hapmap-2/2.0.0/m3vcfs to cloudgene/apps/hapmap-2@2.0.0/2.0.0/m3vcfs...
2019-12-24T00:56:10.488047400Z Import data from /data/apps/hapmap-2/2.0.0/map to cloudgene/apps/hapmap-2@2.0.0/2.0.0/map...
2019-12-24T00:56:11.745775700Z 19/12/24 00:56:11 INFO jobs.CloudgeneJob: Installation of application hapmap-2@2.0.0 finished.
2019-12-24T00:56:11.749058600Z 19/12/24 00:56:11 INFO jobs.AbstractJob: Job job-20191224-005601-620: executing setups...
2019-12-24T00:56:12.119145100Z 19/12/24 00:56:12 INFO LogService: 2019-12-24 00:56:12 172.17.0.1 - 172.17.0.2 80 GET /api/v2/jobs/job-20191224-005601-620/status - 200 9544 0 21 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:56:12.719341100Z 19/12/24 00:56:12 ERROR jobs.AbstractJob: Job job-20191224-005601-620: execution failed. Job Execution failed.
2019-12-24T00:56:12.794104900Z 19/12/24 00:56:12 INFO jobs.AbstractJob: Job job-20191224-005601-620: cleanup successful.
2019-12-24T00:56:12.797337300Z 19/12/24 00:56:12 INFO jobs.WorkflowEngine: Input Validation for job job-20191224-005601-620 finished. Result: false
2019-12-24T00:56:17.014799400Z 19/12/24 00:56:17 INFO queue.Queue: ShortTimeQueue: Job job-20191224-005601-620: finished
2019-12-24T00:56:17.015101800Z 19/12/24 00:56:17 INFO jobs.WorkflowEngine: Setup failed for Job job-20191224-005601-620. Not added to Long Time Queue.
2019-12-24T00:56:17.351120500Z 19/12/24 00:56:17 INFO LogService: 2019-12-24 00:56:17 172.17.0.1 - 172.17.0.2 80 GET /api/v2/jobs/job-20191224-005601-620/status - 200 520 0 3 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:56:17.394561400Z 19/12/24 00:56:17 INFO LogService: 2019-12-24 00:56:17 172.17.0.1 - 172.17.0.2 80 GET /api/v2/jobs/job-20191224-005601-620 - 200 4302 0 31 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:56:17.431694600Z 19/12/24 00:56:17 INFO LogService: 2019-12-24 00:56:17 172.17.0.1 - 172.17.0.2 80 GET /api/v2/jobs/job-20191224-005601-620 - 200 4302 0 8 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:56:29.405301400Z 19/12/24 00:56:29 INFO LogService: 2019-12-24 00:56:29 172.17.0.1 - 172.17.0.2 80 GET /index.html - 200 - 0 10 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:56:29.947582600Z 19/12/24 00:56:29 INFO LogService: 2019-12-24 00:56:29 172.17.0.1 - 172.17.0.2 80 GET /api/v2/server - 200 647 0 5 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:56:30.079513800Z populations
2019-12-24T00:56:30.082349400Z 19/12/24 00:56:30 INFO LogService: 2019-12-24 00:56:30 172.17.0.1 - 172.17.0.2 80 GET /api/v2/server/apps/imputationserver%401.2.4 - 200 3548 0 5 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:56:35.437996200Z 19/12/24 00:56:35 INFO LogService: 2019-12-24 00:56:35 172.17.0.1 - 172.17.0.2 80 GET /api/v2/server/counters - 200 166 0 2http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:56:50.165088500Z 19/12/24 00:56:50 INFO LogService: 2019-12-24 00:56:50 172.17.0.1 - 172.17.0.2 80 GET /admin.html - 200 - 0 6 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T00:56:50.201951800Z 19/12/24 00:56:50 INFO LogService: 2019-12-24 00:56:50 172.17.0.1 - 172.17.0.2 80 GET /dist/bundles/cloudgene/admin.js - 200 475101 0 4 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/admin.html
2019-12-24T00:56:50.625060000Z 19/12/24 00:56:50 INFO LogService: 2019-12-24 00:56:50 172.17.0.1 - 172.17.0.2 80 GET /api/v2/server - 200 647 0 3 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/admin.html
2019-12-24T00:56:50.652403600Z 19/12/24 00:56:50 INFO LogService: 2019-12-24 00:56:50 172.17.0.1 - 172.17.0.2 80 GET /api/v2/server/counters - 200 166 0 1http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/admin.html
2019-12-24T00:56:50.672610200Z 19/12/24 00:56:50 INFO LogService: 2019-12-24 00:56:50 172.17.0.1 - 172.17.0.2 80 GET /api/v2/admin/server/statistics days=1 200 175 06 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/admin.html
2019-12-24T00:56:56.180538800Z 19/12/24 00:56:56 INFO LogService: 2019-12-24 00:56:56 172.17.0.1 - 172.17.0.2 80 GET /api/v2/server/apps - 200 18764 0 128 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/admin.html
2019-12-24T00:57:01.195785700Z 19/12/24 00:57:01 INFO LogService: 2019-12-24 00:57:01 172.17.0.1 - 172.17.0.2 80 GET /dist/node_modules/@fortawesome/fontawesome-free/webfonts/fa-brands-400.woff2 - 200 65316 0 2 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/dist/bundles/admin-index.css
2019-12-24T00:58:25.068411900Z 19/12/24 00:58:25 INFO LogService: 2019-12-24 00:58:25 172.17.0.1 - 172.17.0.2 80 GET /api/v2/server/apps - 200 18764 0 149 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/admin.html
2019-12-24T00:58:25.414734400Z 19/12/24 00:58:25 INFO LogService: 2019-12-24 00:58:25 172.17.0.1 - 172.17.0.2 80 GET /api/v2/server/cloudgene-apps - 200 - 0332 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/admin.html
2019-12-24T01:00:51.097470900Z 19/12/24 01:00:51 INFO LogService: 2019-12-24 01:00:51 172.17.0.1 - 172.17.0.2 80 GET /admin.html - 200 - 0 8 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T01:00:51.559652500Z 19/12/24 01:00:51 INFO LogService: 2019-12-24 01:00:51 172.17.0.1 - 172.17.0.2 80 GET /api/v2/server - 200 647 0 2 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/admin.html
2019-12-24T01:00:51.816444600Z 19/12/24 01:00:51 INFO LogService: 2019-12-24 01:00:51 172.17.0.1 - 172.17.0.2 80 GET /api/v2/server/apps - 200 18764 0 226 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/admin.html
2019-12-24T01:01:08.988166700Z populations
2019-12-24T01:01:08.990537200Z 19/12/24 01:01:08 INFO LogService: 2019-12-24 01:01:08 172.17.0.1 - 172.17.0.2 80 GET /api/v2/server/apps/imputationserver%401.2.4 - 200 3548 0 7 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T01:01:37.761072600Z 19/12/24 01:01:37 INFO queue.Queue: ShortTimeQueue: Submit job...
2019-12-24T01:01:37.761200700Z 19/12/24 01:01:37 INFO jobs.WorkflowEngine: Start input validation for job job-20191224-010137-574...
2019-12-24T01:01:37.762416100Z 19/12/24 01:01:37 INFO LogService: 2019-12-24 01:01:37 172.17.0.1 - 172.17.0.2 80 POST /api/v2/jobs/submit/imputationserver@1.2.4 - 200 - 91130 188 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T01:01:37.766936900Z 19/12/24 01:01:37 INFO jobs.AbstractJob: Job job-20191224-010137-574: executing installation...
2019-12-24T01:01:37.810570100Z 19/12/24 01:01:37 INFO LogService: 2019-12-24 01:01:37 172.17.0.1 - 172.17.0.2 80 GET /api/v2/jobs/job-20191224-010137-574 - 200 9364 0 14 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T01:01:37.848721400Z 19/12/24 01:01:37 INFO jobs.CloudgeneJob: Job job-20191224-010137-574: executing installation for imputationserver@1.2.4...
2019-12-24T01:01:37.929678300Z 19/12/24 01:01:37 INFO jobs.CloudgeneJob: Application 'Genotype Imputation (Minimac4)'is already installed.
2019-12-24T01:01:37.930451100Z 19/12/24 01:01:37 INFO jobs.CloudgeneJob: Job job-20191224-010137-574: executing installation for hapmap-2@2.0.0...
2019-12-24T01:01:37.938104300Z 19/12/24 01:01:37 INFO LogService: 2019-12-24 01:01:37 172.17.0.1 - 172.17.0.2 80 GET /api/v2/jobs/job-20191224-010137-574/status - 200 9345 0 53 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T01:01:37.979907700Z 19/12/24 01:01:37 INFO jobs.CloudgeneJob: Application 'HapMap 2'is already installed.
2019-12-24T01:01:37.981073500Z 19/12/24 01:01:37 INFO jobs.AbstractJob: Job job-20191224-010137-574: executing setups...
2019-12-24T01:01:38.832272000Z 19/12/24 01:01:38 ERROR jobs.AbstractJob: Job job-20191224-010137-574: execution failed. Job Execution failed.
2019-12-24T01:01:38.921133900Z 19/12/24 01:01:38 INFO jobs.AbstractJob: Job job-20191224-010137-574: cleanup successful.
2019-12-24T01:01:38.924046800Z 19/12/24 01:01:38 INFO jobs.WorkflowEngine: Input Validation for job job-20191224-010137-574 finished. Result: false
2019-12-24T01:01:41.699465100Z 19/12/24 01:01:41 INFO queue.Queue: ShortTimeQueue: Job job-20191224-010137-574: finished
2019-12-24T01:01:41.699529200Z 19/12/24 01:01:41 INFO jobs.WorkflowEngine: Setup failed for Job job-20191224-010137-574. Not added to Long Time Queue.
2019-12-24T01:01:42.957299700Z 19/12/24 01:01:42 INFO LogService: 2019-12-24 01:01:42 172.17.0.1 - 172.17.0.2 80 GET /api/v2/jobs/job-20191224-010137-574/status - 200 520 0 3 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T01:01:43.519448000Z 19/12/24 01:01:43 INFO LogService: 2019-12-24 01:01:43 172.17.0.1 - 172.17.0.2 80 GET /api/v2/jobs/job-20191224-010137-574 - 200 4305 0 9 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T01:01:43.768765900Z 19/12/24 01:01:43 INFO LogService: 2019-12-24 01:01:43 172.17.0.1 - 172.17.0.2 80 GET /api/v2/jobs/job-20191224-010137-574 - 200 4305 0 8 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T01:01:55.875019800Z 19/12/24 01:01:55 INFO LogService: 2019-12-24 01:01:55 172.17.0.1 - 172.17.0.2 80 GET /results/job-20191224-010137-574/statisticDir/chunks-excluded.txt - 200 234 0 21 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T01:02:02.106451300Z 19/12/24 01:02:02 INFO LogService: 2019-12-24 01:02:02 172.17.0.1 - 172.17.0.2 80 GET /api/v2/jobs/job-20191224-010137-574 - 200 4305 0 13 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T01:02:04.179986700Z populations
2019-12-24T01:02:04.182479100Z 19/12/24 01:02:04 INFO LogService: 2019-12-24 01:02:04 172.17.0.1 - 172.17.0.2 80 GET /api/v2/server/apps/imputationserver%401.2.4 - 200 3548 0 4 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T01:02:29.756130500Z 19/12/24 01:02:29 INFO queue.Queue: ShortTimeQueue: Submit job...
2019-12-24T01:02:29.756259200Z 19/12/24 01:02:29 INFO jobs.WorkflowEngine: Start input validation for job job-20191224-010229-035...
2019-12-24T01:02:29.756554200Z 19/12/24 01:02:29 INFO jobs.AbstractJob: Job job-20191224-010229-035: executing installation...
2019-12-24T01:02:29.756686400Z 19/12/24 01:02:29 INFO LogService: 2019-12-24 01:02:29 172.17.0.1 - 172.17.0.2 80 POST /api/v2/jobs/submit/imputationserver@1.2.4 - 200 - 1486610 722 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T01:02:29.793557600Z 19/12/24 01:02:29 INFO LogService: 2019-12-24 01:02:29 172.17.0.1 - 172.17.0.2 80 GET /api/v2/jobs/job-20191224-010229-035 - 200 9365 0 7 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T01:02:29.807429700Z 19/12/24 01:02:29 INFO jobs.CloudgeneJob: Job job-20191224-010229-035: executing installation for imputationserver@1.2.4...
2019-12-24T01:02:29.882164800Z 19/12/24 01:02:29 INFO jobs.CloudgeneJob: Application 'Genotype Imputation (Minimac4)'is already installed.
2019-12-24T01:02:29.883209400Z 19/12/24 01:02:29 INFO jobs.CloudgeneJob: Job job-20191224-010229-035: executing installation for hapmap-2@2.0.0...
2019-12-24T01:02:29.895097600Z 19/12/24 01:02:29 INFO LogService: 2019-12-24 01:02:29 172.17.0.1 - 172.17.0.2 80 GET /api/v2/jobs/job-20191224-010229-035/status - 200 9346 0 24 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T01:02:29.924596900Z 19/12/24 01:02:29 INFO jobs.CloudgeneJob: Application 'HapMap 2'is already installed.
2019-12-24T01:02:29.925302600Z 19/12/24 01:02:29 INFO jobs.AbstractJob: Job job-20191224-010229-035: executing setups...
2019-12-24T01:02:33.671730900Z 19/12/24 01:02:33 ERROR jobs.AbstractJob: Job job-20191224-010229-035: execution failed. Job Execution failed.
2019-12-24T01:02:33.780281900Z 19/12/24 01:02:33 INFO jobs.AbstractJob: Job job-20191224-010229-035: cleanup successful.
2019-12-24T01:02:33.781575400Z 19/12/24 01:02:33 INFO jobs.WorkflowEngine: Input Validation for job job-20191224-010229-035 finished. Result: false
2019-12-24T01:02:35.966224200Z 19/12/24 01:02:35 INFO LogService: 2019-12-24 01:02:35 172.17.0.1 - 172.17.0.2 80 GET /api/v2/jobs/job-20191224-010229-035/status - 200 12174 0 27 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T01:02:36.650204500Z 19/12/24 01:02:36 INFO queue.Queue: ShortTimeQueue: Job job-20191224-010229-035: finished
2019-12-24T01:02:36.650571400Z 19/12/24 01:02:36 INFO jobs.WorkflowEngine: Setup failed for Job job-20191224-010229-035. Not added to Long Time Queue.
2019-12-24T01:02:36.704802400Z 19/12/24 01:02:36 INFO LogService: 2019-12-24 01:02:36 172.17.0.1 - 172.17.0.2 80 GET /api/v2/jobs/job-20191224-010229-035 - 200 4314 0 6 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T01:02:37.874462400Z 19/12/24 01:02:37 INFO LogService: 2019-12-24 01:02:37 172.17.0.1 - 172.17.0.2 80 GET /api/v2/jobs/job-20191224-010229-035 - 200 4314 0 4 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/index.html
2019-12-24T01:05:35.596374300Z java.io.IOException: net.lingala.zip4j.exception.ZipException: zip headers not found. probably not a zip file
2019-12-24T01:05:35.603330200Z at cloudgene.mapred.apps.ApplicationRepository.installFromZipFile(ApplicationRepository.java:352)
2019-12-24T01:05:35.604354100Z at cloudgene.mapred.apps.ApplicationRepository.installFromUrl(ApplicationRepository.java:255)
2019-12-24T01:05:35.604398900Z at cloudgene.mapred.apps.ApplicationRepository.install(ApplicationRepository.java:197)
2019-12-24T01:05:35.604427900Z at cloudgene.mapred.api.v2.server.Apps.install(Apps.java:62)
2019-12-24T01:05:35.604481100Z at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
2019-12-24T01:05:35.604512000Z at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
2019-12-24T01:05:35.604531000Z at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
2019-12-24T01:05:35.604554400Z at java.lang.reflect.Method.invoke(Method.java:498)
2019-12-24T01:05:35.604577100Z at org.restlet.resource.ServerResource.doHandle(ServerResource.java:508)
2019-12-24T01:05:35.605253100Z at org.restlet.resource.ServerResource.post(ServerResource.java:1341)
2019-12-24T01:05:35.605279100Z at org.restlet.resource.ServerResource.doHandle(ServerResource.java:606)
2019-12-24T01:05:35.605306900Z at org.restlet.resource.ServerResource.doNegotiatedHandle(ServerResource.java:662)
2019-12-24T01:05:35.605333800Z at org.restlet.resource.ServerResource.doConditionalHandle(ServerResource.java:348)
2019-12-24T01:05:35.605358100Z at org.restlet.resource.ServerResource.handle(ServerResource.java:1020)
2019-12-24T01:05:35.605379000Z at org.restlet.resource.Finder.handle(Finder.java:236)
2019-12-24T01:05:35.605406600Z at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T01:05:35.605428100Z at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T01:05:35.605447200Z at org.restlet.routing.Router.doHandle(Router.java:422)
2019-12-24T01:05:35.605473800Z at org.restlet.routing.Router.handle(Router.java:641)
2019-12-24T01:05:35.605498700Z at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T01:05:35.605524400Z at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T01:05:35.605552100Z at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T01:05:35.605579000Z at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T01:05:35.605606700Z at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T01:05:35.605629500Z at org.restlet.engine.application.StatusFilter.doHandle(StatusFilter.java:140)
2019-12-24T01:05:35.605668000Z at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T01:05:35.605690400Z at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T01:05:35.605731800Z at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T01:05:35.605758400Z at org.restlet.engine.CompositeHelper.handle(CompositeHelper.java:202)
2019-12-24T01:05:35.605812200Z at org.restlet.engine.application.ApplicationHelper.handle(ApplicationHelper.java:77)
2019-12-24T01:05:35.605840800Z at org.restlet.Application.handle(Application.java:385)
2019-12-24T01:05:35.605870200Z at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T01:05:35.605911100Z at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T01:05:35.605936700Z at org.restlet.routing.Router.doHandle(Router.java:422)
2019-12-24T01:05:35.605969000Z at org.restlet.routing.Router.handle(Router.java:641)
2019-12-24T01:05:35.605992900Z at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T01:05:35.606015700Z at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T01:05:35.606043000Z at org.restlet.routing.Router.doHandle(Router.java:422)
2019-12-24T01:05:35.606070100Z at org.restlet.routing.Router.handle(Router.java:641)
2019-12-24T01:05:35.606104400Z at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T01:05:35.606146800Z at org.restlet.engine.application.StatusFilter.doHandle(StatusFilter.java:140)
2019-12-24T01:05:35.606172700Z at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T01:05:35.606200300Z at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T01:05:35.606227600Z at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T01:05:35.606254900Z at org.restlet.engine.CompositeHelper.handle(CompositeHelper.java:202)
2019-12-24T01:05:35.606278900Z at org.restlet.Component.handle(Component.java:408)
2019-12-24T01:05:35.606299300Z at org.restlet.Server.handle(Server.java:507)
2019-12-24T01:05:35.606327500Z at org.restlet.engine.connector.ServerHelper.handle(ServerHelper.java:63)
2019-12-24T01:05:35.606354800Z at org.restlet.engine.adapter.HttpServerHelper.handle(HttpServerHelper.java:143)
2019-12-24T01:05:35.606425900Z at org.restlet.ext.jetty.JettyServerHelper$WrappedServer.handle(JettyServerHelper.java:256)
2019-12-24T01:05:35.606455500Z at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:311)
2019-12-24T01:05:35.606484500Z at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:257)
2019-12-24T01:05:35.606511800Z at org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:544)
2019-12-24T01:05:35.606539100Z at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:635)
2019-12-24T01:05:35.606566200Z at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:555)
2019-12-24T01:05:35.606588100Z at java.lang.Thread.run(Thread.java:748)
2019-12-24T01:05:35.606619100Z Caused by: net.lingala.zip4j.exception.ZipException: zip headers not found. probably not a zip file
2019-12-24T01:05:35.606646900Z at net.lingala.zip4j.core.HeaderReader.readEndOfCentralDirectoryRecord(HeaderReader.java:122)
2019-12-24T01:05:35.606685300Z at net.lingala.zip4j.core.HeaderReader.readAllHeaders(HeaderReader.java:78)
2019-12-24T01:05:35.606711400Z at net.lingala.zip4j.core.ZipFile.readZipInfo(ZipFile.java:425)
2019-12-24T01:05:35.606739200Z at net.lingala.zip4j.core.ZipFile.extractAll(ZipFile.java:475)
2019-12-24T01:05:35.606766500Z at net.lingala.zip4j.core.ZipFile.extractAll(ZipFile.java:451)
2019-12-24T01:05:35.606793400Z at cloudgene.mapred.apps.ApplicationRepository.installFromZipFile(ApplicationRepository.java:350)
2019-12-24T01:05:35.606814800Z ... 55 more
2019-12-24T01:05:35.614901300Z 19/12/24 01:05:35 ERROR server.Apps: Application not installed.
2019-12-24T01:05:35.614950400Z java.io.IOException: net.lingala.zip4j.exception.ZipException: zip headers not found. probably not a zip file
2019-12-24T01:05:35.614994600Z at cloudgene.mapred.apps.ApplicationRepository.installFromZipFile(ApplicationRepository.java:352)
2019-12-24T01:05:35.615025000Z at cloudgene.mapred.apps.ApplicationRepository.installFromUrl(ApplicationRepository.java:255)
2019-12-24T01:05:35.615048800Z at cloudgene.mapred.apps.ApplicationRepository.install(ApplicationRepository.java:197)
2019-12-24T01:05:35.615071100Z at cloudgene.mapred.api.v2.server.Apps.install(Apps.java:62)
2019-12-24T01:05:35.615098300Z at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
2019-12-24T01:05:35.615128200Z at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
2019-12-24T01:05:35.615687100Z at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
2019-12-24T01:05:35.615719900Z at java.lang.reflect.Method.invoke(Method.java:498)
2019-12-24T01:05:35.615749800Z at org.restlet.resource.ServerResource.doHandle(ServerResource.java:508)
2019-12-24T01:05:35.615787000Z at org.restlet.resource.ServerResource.post(ServerResource.java:1341)
2019-12-24T01:05:35.615816300Z at org.restlet.resource.ServerResource.doHandle(ServerResource.java:606)
2019-12-24T01:05:35.615845100Z at org.restlet.resource.ServerResource.doNegotiatedHandle(ServerResource.java:662)
2019-12-24T01:05:35.615874900Z at org.restlet.resource.ServerResource.doConditionalHandle(ServerResource.java:348)
2019-12-24T01:05:35.615902200Z at org.restlet.resource.ServerResource.handle(ServerResource.java:1020)
2019-12-24T01:05:35.615932400Z at org.restlet.resource.Finder.handle(Finder.java:236)
2019-12-24T01:05:35.615962400Z at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T01:05:35.615989500Z at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T01:05:35.616017500Z at org.restlet.routing.Router.doHandle(Router.java:422)
2019-12-24T01:05:35.616044700Z at org.restlet.routing.Router.handle(Router.java:641)
2019-12-24T01:05:35.616071100Z at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T01:05:35.616106700Z at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T01:05:35.616134900Z at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T01:05:35.616162000Z at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T01:05:35.616187700Z at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T01:05:35.616215200Z at org.restlet.engine.application.StatusFilter.doHandle(StatusFilter.java:140)
2019-12-24T01:05:35.616241300Z at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T01:05:35.616267300Z at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T01:05:35.616301400Z at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T01:05:35.616326100Z at org.restlet.engine.CompositeHelper.handle(CompositeHelper.java:202)
2019-12-24T01:05:35.616353700Z at org.restlet.engine.application.ApplicationHelper.handle(ApplicationHelper.java:77)
2019-12-24T01:05:35.616381500Z at org.restlet.Application.handle(Application.java:385)
2019-12-24T01:05:35.616410500Z at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T01:05:35.616431900Z at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T01:05:35.616456400Z at org.restlet.routing.Router.doHandle(Router.java:422)
2019-12-24T01:05:35.616521000Z at org.restlet.routing.Router.handle(Router.java:641)
2019-12-24T01:05:35.616551200Z at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T01:05:35.616580000Z at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T01:05:35.616600200Z at org.restlet.routing.Router.doHandle(Router.java:422)
2019-12-24T01:05:35.616648500Z at org.restlet.routing.Router.handle(Router.java:641)
2019-12-24T01:05:35.616677600Z at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T01:05:35.616710700Z at org.restlet.engine.application.StatusFilter.doHandle(StatusFilter.java:140)
2019-12-24T01:05:35.616737700Z at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T01:05:35.616763700Z at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T01:05:35.616803800Z at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T01:05:35.616836100Z at org.restlet.engine.CompositeHelper.handle(CompositeHelper.java:202)
2019-12-24T01:05:35.616862800Z at org.restlet.Component.handle(Component.java:408)
2019-12-24T01:05:35.616893200Z at org.restlet.Server.handle(Server.java:507)
2019-12-24T01:05:35.616916900Z at org.restlet.engine.connector.ServerHelper.handle(ServerHelper.java:63)
2019-12-24T01:05:35.616943400Z at org.restlet.engine.adapter.HttpServerHelper.handle(HttpServerHelper.java:143)
2019-12-24T01:05:35.616985600Z at org.restlet.ext.jetty.JettyServerHelper$WrappedServer.handle(JettyServerHelper.java:256)
2019-12-24T01:05:35.617016200Z at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:311)
2019-12-24T01:05:35.617053500Z at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:257)
2019-12-24T01:05:35.617077600Z at org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:544)
2019-12-24T01:05:35.617097600Z at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:635)
2019-12-24T01:05:35.617610500Z at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:555)
2019-12-24T01:05:35.617644000Z at java.lang.Thread.run(Thread.java:748)
2019-12-24T01:05:35.617687100Z Caused by: net.lingala.zip4j.exception.ZipException: zip headers not found. probably not a zip file
2019-12-24T01:05:35.617709500Z at net.lingala.zip4j.core.HeaderReader.readEndOfCentralDirectoryRecord(HeaderReader.java:122)
2019-12-24T01:05:35.617733600Z at net.lingala.zip4j.core.HeaderReader.readAllHeaders(HeaderReader.java:78)
2019-12-24T01:05:35.617757100Z at net.lingala.zip4j.core.ZipFile.readZipInfo(ZipFile.java:425)
2019-12-24T01:05:35.617780500Z at net.lingala.zip4j.core.ZipFile.extractAll(ZipFile.java:475)
2019-12-24T01:05:35.617852500Z at net.lingala.zip4j.core.ZipFile.extractAll(ZipFile.java:451)
2019-12-24T01:05:35.617893200Z at cloudgene.mapred.apps.ApplicationRepository.installFromZipFile(ApplicationRepository.java:350)
2019-12-24T01:05:35.617920200Z ... 55 more
2019-12-24T01:05:35.620071400Z 19/12/24 01:05:35 INFO LogService: 2019-12-24 01:05:35 172.17.0.1 - 172.17.0.2 80 POST /api/v2/server/apps - 400 115 100 110765 http://localhost:8080 Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36 http://localhost:8080/admin.html
2019-12-24T01:07:32.823620800Z /opt/cloudgene/cloudgene: line 24: 1567 Killed java -cp $CLASS_PATH $CLASS "$@"
(base) liezls-mbp:~ lie$ docker run -d -p 8080:80 genepi/imputationserver:v1.2.2
(base) liezls-mbp:~ lie$ docker ls
docker: 'ls' is not a docker command.
See 'docker --help'
(base) liezls-mbp:~ lie$ docker containers ls
docker: 'containers' is not a docker command.
See 'docker --help'
(base) liezls-mbp:~ lie$ docker container ls
CONTAINER ID IMAGE COMMAND CREATED STATUS PORTS NAMES
093ca3dac987 genepi/imputationserver:v1.2.4 "/usr/bin/startup" 4 minutes ago Up 4 minutes 50010/tcp, 50020/tcp, 50030/tcp, 50050/tcp, 50070/tcp, 50075/tcp, 50090/tcp, 0.0.0.0:8080->80/tcp vibrant_spence
(base) liezls-mbp:~ lie$ docker run -d -p 8080:80 genepi/imputationserver:v1.2.2
(base) liezls-mbp:~ lie$ docker kill 093ca3dac987
093ca3dac987
(base) liezls-mbp:~ lie$ docker run -d -p 8080:80 genepi/imputationserver:v1.2.2
Unable to find image 'genepi/imputationserver:v1.2.2' locally
v1.2.2: Pulling from genepi/imputationserver
99ad4e3ced4d: Already exists
ec5a723f4e2a: Already exists
2a175e11567c: Already exists
8d26426e95e0: Already exists
46e451596b7c: Already exists
4a6387da8b25: Already exists
065f8ee043f9: Already exists
b55681947bb2: Already exists
7a5a6a2f28c3: Already exists
591933d1dbb2: Already exists
6571e467ab79: Already exists
7540defe1262: Already exists
58b8a9f3817a: Already exists
d17c2b9b9aeb: Already exists
91e55bb89e77: Already exists
59cf6933e3a4: Already exists
b73228705474: Already exists
f8adba9ce063: Already exists
489b4c082e08: Already exists
8ee164d59d92: Already exists
b23b1b395d7f: Already exists
f7b13cfbed27: Already exists
f2eb17fe3758: Already exists
cd5af2c40896: Already exists
009fc314532e: Already exists
e8e9074b00e7: Already exists
876d711c44a7: Already exists
a9fc7e147ec8: Already exists
5338de059b02: Already exists
da0c1e93285c: Already exists
3fc351e21429: Already exists
ca2a86f6cf61: Already exists
c902629070d6: Already exists
1e3d330cc981: Already exists
26ac9d2be2d7: Already exists
294d1efc40fa: Already exists
10a3dc4c5917: Already exists
a856cc867844: Already exists
2d5cda3cf66b: Already exists
d59394a06259: Pull complete
34121bbb26ad: Pull complete
624fdd513793: Pull complete
3816f80da43f: Pull complete
a9adcaca7bf7: Pull complete
53b2c4b07ae2: Pull complete
f057314a2fa3: Pull complete
dc89fe61a5fe: Pull complete
f2d9af8c90ed: Pull complete
6a3682d471e8: Pull complete
a6afd0ecba3d: Pull complete
172db6d8cb2c: Pull complete
Digest: sha256:37f6b06339fb501e8867febb1ad221c74575f21ecdb574317f06610ec9379970
Status: Downloaded newer image for genepi/imputationserver:v1.2.2
c2ff9d45f912d26e3f5db9358d6eb1b28340507f2fbedf0ce8dc7d5faec0d69d
(base) liezls-mbp:~ lie$ cloudgene
-bash: cloudgene: command not found
(base) liezls-mbp:~ lie$ docker containers ls
docker: 'containers' is not a docker command.
See 'docker --help'
(base) liezls-mbp:~ lie$ docker container ls
CONTAINER ID IMAGE COMMAND CREATED STATUS PORTS NAMES
c2ff9d45f912 genepi/imputationserver:v1.2.2 "/usr/bin/startup" 19 seconds ago Up 18 seconds 50010/tcp, 50020/tcp, 50030/tcp, 50050/tcp, 50070/tcp, 50075/tcp, 50090/tcp, 0.0.0.0:8080->80/tcp heuristic_gould
(base) liezls-mbp:~ lie$ docker container ls
CONTAINER ID IMAGE COMMAND CREATED STATUS PORTS NAMES
c2ff9d45f912 genepi/imputationserver:v1.2.2 "/usr/bin/startup" About a minute ago Up About a minute 50010/tcp, 50020/tcp, 50030/tcp, 50050/tcp, 50070/tcp, 50075/tcp, 50090/tcp, 0.0.0.0:8080->80/tcp heuristic_gould
(base) liezls-mbp:~ lie$ http://localhost:8080/
-bash: http://localhost:8080/: No such file or directory
(base) liezls-mbp:~ lie$ docker container ls
CONTAINER ID IMAGE COMMAND CREATED STATUS PORTS NAMES
c2ff9d45f912 genepi/imputationserver:v1.2.2 "/usr/bin/startup" 10 days ago Up 10 days 50010/tcp, 50020/tcp, 50030/tcp, 50050/tcp, 50070/tcp, 50075/tcp, 50090/tcp, 0.0.0.0:8080->80/tcp heuristic_gould
(base) liezls-mbp:~ lie$
@liezl200
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liezl200 commented Jan 3, 2020 

(base) liezls-mbp:~ lie$ docker container ls
CONTAINER ID        IMAGE                            COMMAND              CREATED             STATUS              PORTS                                                                                               NAMES
c2ff9d45f912        genepi/imputationserver:v1.2.2   "/usr/bin/startup"   10 days ago         Up 10 days          50010/tcp, 50020/tcp, 50030/tcp, 50050/tcp, 50070/tcp, 50075/tcp, 50090/tcp, 0.0.0.0:8080->80/tcp   heuristic_gould
(base) liezls-mbp:~ lie$ docker logs --timestamps c2ff9d45f912
2019-12-24T01:18:14.274788400Z
2019-12-24T01:18:14.274844300Z Cloudgene 2.0.0
2019-12-24T01:18:14.274861000Z http://www.cloudgene.io
2019-12-24T01:18:14.274877200Z (c) 2009-2019 Lukas Forer and Sebastian Schoenherr
2019-12-24T01:18:14.282707300Z Built by null on null
2019-12-24T01:18:14.283201700Z Built by null on null
2019-12-24T01:18:14.283250400Z
2019-12-24T01:18:14.689772100Z SLF4J: Class path contains multiple SLF4J bindings.
2019-12-24T01:18:14.689805400Z SLF4J: Found binding in [jar:file:/opt/cloudgene/lib/slf4j-log4j12-1.6.1.jar!/org/slf4j/impl/StaticLoggerBinder.class]
2019-12-24T01:18:14.690030800Z SLF4J: Found binding in [jar:file:/usr/lib/zookeeper/lib/slf4j-log4j12-1.7.5.jar!/org/slf4j/impl/StaticLoggerBinder.class]
2019-12-24T01:18:14.690049800Z SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation.
2019-12-24T01:18:14.705314900Z Installing application https://github.com/genepi/imputationserver/releases/download/v1.2.1/imputationserver.zip...
2019-12-24T01:18:18.313516500Z [OK] Application installed:
2019-12-24T01:18:18.313544800Z
2019-12-24T01:18:18.314017600Z Installing application https://imputationserver.sph.umich.edu/static/downloads/releases/hapmap2-2.0.0.zip...
2019-12-24T01:18:37.528943100Z [OK] Application installed:
2019-12-24T01:18:37.528987800Z
2019-12-24T01:18:37.562534100Z set amount cores to 4
2019-12-24T01:18:37.562573900Z set hostname to 172.17.0.2
2019-12-24T01:18:37.566817900Z No HDFS folder in data folder. Format Namenode...
2019-12-24T01:18:38.491203000Z 19/12/24 01:18:38 INFO namenode.NameNode: STARTUP_MSG:
2019-12-24T01:18:38.491244900Z /************************************************************
2019-12-24T01:18:38.491268300Z STARTUP_MSG: Starting NameNode
2019-12-24T01:18:38.491291100Z STARTUP_MSG:   user = hdfs
2019-12-24T01:18:38.491313700Z STARTUP_MSG:   host = c2ff9d45f912/172.17.0.2
2019-12-24T01:18:38.491335400Z STARTUP_MSG:   args = [-format]
2019-12-24T01:18:38.491357900Z STARTUP_MSG:   version = 2.6.0-cdh5.14.0
2019-12-24T01:18:38.491753300Z STARTUP_MSG:   classpath = /etc/hadoop/conf:/usr/lib/hadoop/lib/httpclient-4.2.5.jar:/usr/lib/hadoop/lib/jasper-runtime-5.5.23.jar:/usr/lib/hadoop/lib/commons-el-1.0.jar:/usr/lib/hadoop/lib/jaxb-api-2.2.2.jar:/usr/lib/hadoop/lib/commons-httpclient-3.1.jar:/usr/lib/hadoop/lib/stax-api-1.0-2.jar:/usr/lib/hadoop/lib/hamcrest-core-1.3.jar:/usr/lib/hadoop/lib/xz-1.0.jar:/usr/lib/hadoop/lib/jsp-api-2.1.jar:/usr/lib/hadoop/lib/commons-codec-1.4.jar:/usr/lib/hadoop/lib/jersey-json-1.9.jar:/usr/lib/hadoop/lib/logredactor-1.0.3.jar:/usr/lib/hadoop/lib/servlet-api-2.5.jar:/usr/lib/hadoop/lib/commons-configuration-1.6.jar:/usr/lib/hadoop/lib/azure-data-lake-store-sdk-2.2.3.jar:/usr/lib/hadoop/lib/avro.jar:/usr/lib/hadoop/lib/jsr305-3.0.0.jar:/usr/lib/hadoop/lib/commons-io-2.4.jar:/usr/lib/hadoop/lib/commons-logging-1.1.3.jar:/usr/lib/hadoop/lib/jasper-compiler-5.5.23.jar:/usr/lib/hadoop/lib/activation-1.1.jar:/usr/lib/hadoop/lib/commons-beanutils-1.9.2.jar:/usr/lib/hadoop/lib/curator-client-2.7.1.jar:/usr/lib/hadoop/lib/commons-digester-1.8.jar:/usr/lib/hadoop/lib/xmlenc-0.52.jar:/usr/lib/hadoop/lib/htrace-core4-4.0.1-incubating.jar:/usr/lib/hadoop/lib/paranamer-2.3.jar:/usr/lib/hadoop/lib/apacheds-i18n-2.0.0-M15.jar:/usr/lib/hadoop/lib/jackson-jaxrs-1.8.8.jar:/usr/lib/hadoop/lib/aws-java-sdk-bundle-1.11.134.jar:/usr/lib/hadoop/lib/asm-3.2.jar:/usr/lib/hadoop/lib/gson-2.2.4.jar:/usr/lib/hadoop/lib/commons-cli-1.2.jar:/usr/lib/hadoop/lib/jsch-0.1.42.jar:/usr/lib/hadoop/lib/jackson-xc-1.8.8.jar:/usr/lib/hadoop/lib/junit-4.11.jar:/usr/lib/hadoop/lib/api-util-1.0.0-M20.jar:/usr/lib/hadoop/lib/java-xmlbuilder-0.4.jar:/usr/lib/hadoop/lib/jetty-6.1.26.cloudera.4.jar:/usr/lib/hadoop/lib/commons-math3-3.1.1.jar:/usr/lib/hadoop/lib/zookeeper.jar:/usr/lib/hadoop/lib/commons-compress-1.4.1.jar:/usr/lib/hadoop/lib/curator-recipes-2.7.1.jar:/usr/lib/hadoop/lib/netty-3.10.5.Final.jar:/usr/lib/hadoop/lib/curator-framework-2.7.1.jar:/usr/lib/hadoop/lib/commons-lang-2.6.jar:/usr/lib/hadoop/lib/slf4j-log4j12.jar:/usr/lib/hadoop/lib/commons-beanutils-core-1.8.0.jar:/usr/lib/hadoop/lib/log4j-1.2.17.jar:/usr/lib/hadoop/lib/jersey-core-1.9.jar:/usr/lib/hadoop/lib/guava-11.0.2.jar:/usr/lib/hadoop/lib/apacheds-kerberos-codec-2.0.0-M15.jar:/usr/lib/hadoop/lib/jettison-1.1.jar:/usr/lib/hadoop/lib/jets3t-0.9.0.jar:/usr/lib/hadoop/lib/jersey-server-1.9.jar:/usr/lib/hadoop/lib/jaxb-impl-2.2.3-1.jar:/usr/lib/hadoop/lib/commons-net-3.1.jar:/usr/lib/hadoop/lib/slf4j-api-1.7.5.jar:/usr/lib/hadoop/lib/httpcore-4.2.5.jar:/usr/lib/hadoop/lib/snappy-java-1.0.4.1.jar:/usr/lib/hadoop/lib/jetty-util-6.1.26.cloudera.4.jar:/usr/lib/hadoop/lib/api-asn1-api-1.0.0-M20.jar:/usr/lib/hadoop/lib/mockito-all-1.8.5.jar:/usr/lib/hadoop/lib/commons-collections-3.2.2.jar:/usr/lib/hadoop/lib/protobuf-java-2.5.0.jar:/usr/lib/hadoop/.//parquet-hadoop.jar:/usr/lib/hadoop/.//hadoop-azure-datalake-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop/.//hadoop-nfs-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop/.//parquet-encoding.jar:/usr/lib/hadoop/.//parquet-column.jar:/usr/lib/hadoop/.//hadoop-common-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop/.//parquet-avro.jar:/usr/lib/hadoop/.//parquet-format.jar:/usr/lib/hadoop/.//parquet-format-sources.jar:/usr/lib/hadoop/.//parquet-format-javadoc.jar:/usr/lib/hadoop/.//parquet-cascading.jar:/usr/lib/hadoop/.//parquet-hadoop-bundle.jar:/usr/lib/hadoop/.//parquet-tools.jar:/usr/lib/hadoop/.//parquet-common.jar:/usr/lib/hadoop/.//hadoop-common-2.6.0-cdh5.14.0-tests.jar:/usr/lib/hadoop/.//hadoop-aws.jar:/usr/lib/hadoop/.//parquet-thrift.jar:/usr/lib/hadoop/.//parquet-generator.jar:/usr/lib/hadoop/.//hadoop-auth-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop/.//parquet-scala_2.10.jar:/usr/lib/hadoop/.//parquet-pig.jar:/usr/lib/hadoop/.//hadoop-nfs.jar:/usr/lib/hadoop/.//parquet-pig-bundle.jar:/usr/lib/hadoop/.//hadoop-azure-datalake.jar:/usr/lib/hadoop/.//hadoop-annotations-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop/.//hadoop-annotations.jar:/usr/lib/hadoop/.//hadoop-common-tests.jar:/usr/lib/hadoop/.//hadoop-auth.jar:/usr/lib/hadoop/.//parquet-test-hadoop2.jar:/usr/lib/hadoop/.//hadoop-common.jar:/usr/lib/hadoop/.//parquet-protobuf.jar:/usr/lib/hadoop/.//hadoop-aws-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop/.//parquet-jackson.jar:/usr/lib/hadoop/.//parquet-scrooge_2.10.jar:/usr/lib/hadoop-hdfs/./:/usr/lib/hadoop-hdfs/lib/jasper-runtime-5.5.23.jar:/usr/lib/hadoop-hdfs/lib/commons-el-1.0.jar:/usr/lib/hadoop-hdfs/lib/jsp-api-2.1.jar:/usr/lib/hadoop-hdfs/lib/commons-codec-1.4.jar:/usr/lib/hadoop-hdfs/lib/servlet-api-2.5.jar:/usr/lib/hadoop-hdfs/lib/jsr305-3.0.0.jar:/usr/lib/hadoop-hdfs/lib/commons-io-2.4.jar:/usr/lib/hadoop-hdfs/lib/commons-logging-1.1.3.jar:/usr/lib/hadoop-hdfs/lib/xmlenc-0.52.jar:/usr/lib/hadoop-hdfs/lib/htrace-core4-4.0.1-incubating.jar:/usr/lib/hadoop-hdfs/lib/jackson-core-asl-1.8.8.jar:/usr/lib/hadoop-hdfs/lib/leveldbjni-all-1.8.jar:/usr/lib/hadoop-hdfs/lib/asm-3.2.jar:/usr/lib/hadoop-hdfs/lib/commons-cli-1.2.jar:/usr/lib/hadoop-hdfs/lib/jetty-6.1.26.cloudera.4.jar:/usr/lib/hadoop-hdfs/lib/commons-daemon-1.0.13.jar:/usr/lib/hadoop-hdfs/lib/netty-3.10.5.Final.jar:/usr/lib/hadoop-hdfs/lib/commons-lang-2.6.jar:/usr/lib/hadoop-hdfs/lib/log4j-1.2.17.jar:/usr/lib/hadoop-hdfs/lib/jersey-core-1.9.jar:/usr/lib/hadoop-hdfs/lib/guava-11.0.2.jar:/usr/lib/hadoop-hdfs/lib/jackson-mapper-asl-1.8.8.jar:/usr/lib/hadoop-hdfs/lib/jersey-server-1.9.jar:/usr/lib/hadoop-hdfs/lib/xercesImpl-2.9.1.jar:/usr/lib/hadoop-hdfs/lib/xml-apis-1.3.04.jar:/usr/lib/hadoop-hdfs/lib/jetty-util-6.1.26.cloudera.4.jar:/usr/lib/hadoop-hdfs/lib/protobuf-java-2.5.0.jar:/usr/lib/hadoop-hdfs/.//hadoop-hdfs-nfs-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-hdfs/.//hadoop-hdfs-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-hdfs/.//hadoop-hdfs.jar:/usr/lib/hadoop-hdfs/.//hadoop-hdfs-tests.jar:/usr/lib/hadoop-hdfs/.//hadoop-hdfs-2.6.0-cdh5.14.0-tests.jar:/usr/lib/hadoop-hdfs/.//hadoop-hdfs-nfs.jar:/usr/lib/hadoop-yarn/lib/jaxb-api-2.2.2.jar:/usr/lib/hadoop-yarn/lib/aopalliance-1.0.jar:/usr/lib/hadoop-yarn/lib/stax-api-1.0-2.jar:/usr/lib/hadoop-yarn/lib/xz-1.0.jar:/usr/lib/hadoop-yarn/lib/commons-codec-1.4.jar:/usr/lib/hadoop-yarn/lib/jersey-json-1.9.jar:/usr/lib/hadoop-yarn/lib/servlet-api-2.5.jar:/usr/lib/hadoop-yarn/lib/jersey-client-1.9.jar:/usr/lib/hadoop-yarn/lib/jsr305-3.0.0.jar:/usr/lib/hadoop-yarn/lib/commons-io-2.4.jar:/usr/lib/hadoop-yarn/lib/commons-logging-1.1.3.jar:/usr/lib/hadoop-yarn/lib/guice-3.0.jar:/usr/lib/hadoop-yarn/lib/activation-1.1.jar:/usr/lib/hadoop-yarn/lib/jersey-guice-1.9.jar:/usr/lib/hadoop-yarn/lib/jackson-core-asl-1.8.8.jar:/usr/lib/hadoop-yarn/lib/jackson-jaxrs-1.8.8.jar:/usr/lib/hadoop-yarn/lib/leveldbjni-all-1.8.jar:/usr/lib/hadoop-yarn/lib/asm-3.2.jar:/usr/lib/hadoop-yarn/lib/guice-servlet-3.0.jar:/usr/lib/hadoop-yarn/lib/commons-cli-1.2.jar:/usr/lib/hadoop-yarn/lib/jackson-xc-1.8.8.jar:/usr/lib/hadoop-yarn/lib/jline-2.11.jar:/usr/lib/hadoop-yarn/lib/jetty-6.1.26.cloudera.4.jar:/usr/lib/hadoop-yarn/lib/zookeeper.jar:/usr/lib/hadoop-yarn/lib/commons-compress-1.4.1.jar:/usr/lib/hadoop-yarn/lib/commons-lang-2.6.jar:/usr/lib/hadoop-yarn/lib/javax.inject-1.jar:/usr/lib/hadoop-yarn/lib/log4j-1.2.17.jar:/usr/lib/hadoop-yarn/lib/jersey-core-1.9.jar:/usr/lib/hadoop-yarn/lib/guava-11.0.2.jar:/usr/lib/hadoop-yarn/lib/jettison-1.1.jar:/usr/lib/hadoop-yarn/lib/jackson-mapper-asl-1.8.8.jar:/usr/lib/hadoop-yarn/lib/jersey-server-1.9.jar:/usr/lib/hadoop-yarn/lib/jaxb-impl-2.2.3-1.jar:/usr/lib/hadoop-yarn/lib/jetty-util-6.1.26.cloudera.4.jar:/usr/lib/hadoop-yarn/lib/commons-collections-3.2.2.jar:/usr/lib/hadoop-yarn/lib/protobuf-java-2.5.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-registry-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-common.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-tests.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-common-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-common.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-web-proxy.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-api.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-resourcemanager-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-web-proxy-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-tests-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-applicationhistoryservice.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-registry.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-nodemanager-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-applications-distributedshell-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-client.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-applications-unmanaged-am-launcher-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-common-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-applicationhistoryservice-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-nodemanager.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-api-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-applications-unmanaged-am-launcher.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-server-resourcemanager.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-client-2.6.0-cdh5.14.0.jar:/usr/lib/hadoop-yarn/.//hadoop-yarn-applications-distributedshell.jar:/usr/lib/hadoop-0.20-mapreduce/./:/usr/lib/hadoop-0.20-mapreduce/lib/httpclient-4.2.5.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jasper-runtime-5.5.23.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-el-1.0.jar:/usr/lib/hadoop-0.20-mapreduce/lib/joda-time-2.8.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jaxb-api-2.2.2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-httpclient-3.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/stax-api-1.0-2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/xz-1.0.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jsp-api-2.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-codec-1.4.jar:/usr/lib/hadoop-0.20-mapreduce/lib/hsqldb-1.8.0.10.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jersey-json-1.9.jar:/usr/lib/hadoop-0.20-mapreduce/lib/servlet-api-2.5.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-configuration-1.6.jar:/usr/lib/hadoop-0.20-mapreduce/lib/avro.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jsr305-3.0.0.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-io-2.4.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-logging-1.1.3.jar:/usr/lib/hadoop-0.20-mapreduce/lib/netty-all-4.0.23.Final.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jasper-compiler-5.5.23.jar:/usr/lib/hadoop-0.20-mapreduce/lib/activation-1.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-beanutils-1.9.2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/curator-client-2.7.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-digester-1.8.jar:/usr/lib/hadoop-0.20-mapreduce/lib/xmlenc-0.52.jar:/usr/lib/hadoop-0.20-mapreduce/lib/htrace-core4-4.0.1-incubating.jar:/usr/lib/hadoop-0.20-mapreduce/lib/paranamer-2.3.jar:/usr/lib/hadoop-0.20-mapreduce/lib/apacheds-i18n-2.0.0-M15.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jackson-jaxrs-1.8.8.jar:/usr/lib/hadoop-0.20-mapreduce/lib/leveldbjni-all-1.8.jar:/usr/lib/hadoop-0.20-mapreduce/lib/ant-contrib-1.0b3.jar:/usr/lib/hadoop-0.20-mapreduce/lib/aws-java-sdk-bundle-1.11.134.jar:/usr/lib/hadoop-0.20-mapreduce/lib/netty-3.2.2.Final.jar:/usr/lib/hadoop-0.20-mapreduce/lib/asm-3.2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jackson-mapper-asl-1.9.13.jar:/usr/lib/hadoop-0.20-mapreduce/lib/gson-2.2.4.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jackson-annotations-2.2.3.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-cli-1.2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/kfs-0.2.2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jsch-0.1.42.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jackson-xc-1.8.8.jar:/usr/lib/hadoop-0.20-mapreduce/lib/api-util-1.0.0-M20.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jackson-core-asl-1.9.13.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jline-2.11.jar:/usr/lib/hadoop-0.20-mapreduce/lib/java-xmlbuilder-0.4.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jetty-6.1.26.cloudera.4.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-math3-3.1.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/zookeeper.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-compress-1.4.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/curator-recipes-2.7.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jackson-core-2.2.3.jar:/usr/lib/hadoop-0.20-mapreduce/lib/netty-3.10.5.Final.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jackson-databind-2.2.3.jar:/usr/lib/hadoop-0.20-mapreduce/lib/avro-compiler.jar:/usr/lib/hadoop-0.20-mapreduce/lib/curator-framework-2.7.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-lang-2.6.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-beanutils-core-1.8.0.jar:/usr/lib/hadoop-0.20-mapreduce/lib/log4j-1.2.17.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jersey-core-1.9.jar:/usr/lib/hadoop-0.20-mapreduce/lib/guava-11.0.2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/apacheds-kerberos-codec-2.0.0-M15.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jettison-1.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jets3t-0.9.0.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jersey-server-1.9.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jaxb-impl-2.2.3-1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-net-3.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/slf4j-api-1.7.5.jar:/usr/lib/hadoop-0.20-mapreduce/lib/hadoop-fairscheduler-2.6.0-mr1-cdh5.14.0.jar:/usr/lib/hadoop-0.20-mapreduce/lib/httpcore-4.2.5.jar:/usr/lib/hadoop-0.20-mapreduce/lib/xercesImpl-2.9.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/xml-apis-1.3.04.jar:/usr/lib/hadoop-0.20-mapreduce/lib/snappy-java-1.0.4.1.jar:/usr/lib/hadoop-0.20-mapreduce/lib/jetty-util-6.1.26.cloudera.4.jar:/usr/lib/hadoop-0.20-mapreduce/lib/api-asn1-api-1.0.0-M20.jar:/usr/lib/hadoop-0.20-mapreduce/lib/mockito-all-1.8.5.jar:/usr/lib/hadoop-0.20-mapreduce/lib/commons-collections-3.2.2.jar:/usr/lib/hadoop-0.20-mapreduce/lib/protobuf-java-2.5.0.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-tools-2.6.0-mr1-cdh5.14.0.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-ant-2.6.0-mr1-cdh5.14.0.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-test-mr1.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-tools-mr1.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-core-2.6.0-mr1-cdh5.14.0.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-examples.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-examples-2.6.0-mr1-cdh5.14.0.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-test-2.6.0-mr1-cdh5.14.0.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-core-mr1.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-ant-mr1.jar:/usr/lib/hadoop-0.20-mapreduce/.//hadoop-examples-mr1.jar
2019-12-24T01:18:38.491851600Z STARTUP_MSG:   build = http://github.com/cloudera/hadoop -r 9b197d35839383c798c618ba917ccaa196a17699 ; compiled by 'jenkins' on 2018-01-06T21:40Z
2019-12-24T01:18:38.491881400Z STARTUP_MSG:   java = 1.8.0_161
2019-12-24T01:18:38.491908700Z ************************************************************/
2019-12-24T01:18:38.502803500Z 19/12/24 01:18:38 INFO namenode.NameNode: registered UNIX signal handlers for [TERM, HUP, INT]
2019-12-24T01:18:38.508181100Z 19/12/24 01:18:38 INFO namenode.NameNode: createNameNode [-format]
2019-12-24T01:18:39.223977300Z Formatting using clusterid: CID-fd44d47a-70c4-4bae-a1c5-c18ec42ee76e
2019-12-24T01:18:39.272571500Z 19/12/24 01:18:39 INFO namenode.FSEditLog: Edit logging is async:true
2019-12-24T01:18:39.296542500Z 19/12/24 01:18:39 INFO namenode.FSNamesystem: No KeyProvider found.
2019-12-24T01:18:39.341765000Z 19/12/24 01:18:39 INFO namenode.FSNamesystem: fsLock is fair: true
2019-12-24T01:18:39.449045700Z 19/12/24 01:18:39 INFO blockmanagement.DatanodeManager: dfs.block.invalidate.limit=1000
2019-12-24T01:18:39.449091300Z 19/12/24 01:18:39 INFO blockmanagement.DatanodeManager: dfs.namenode.datanode.registration.ip-hostname-check=true
2019-12-24T01:18:39.451238900Z 19/12/24 01:18:39 INFO blockmanagement.BlockManager: dfs.namenode.startup.delay.block.deletion.sec is set to 000:00:00:00.000
2019-12-24T01:18:39.451698300Z 19/12/24 01:18:39 INFO blockmanagement.BlockManager: The block deletion will start around 2019 Dec 24 01:18:39
2019-12-24T01:18:39.455525900Z 19/12/24 01:18:39 INFO util.GSet: Computing capacity for map BlocksMap
2019-12-24T01:18:39.455572500Z 19/12/24 01:18:39 INFO util.GSet: VM type       = 64-bit
2019-12-24T01:18:39.459214400Z 19/12/24 01:18:39 INFO util.GSet: 2.0% max memory 889 MB = 17.8 MB
2019-12-24T01:18:39.459256300Z 19/12/24 01:18:39 INFO util.GSet: capacity      = 2^21 = 2097152 entries
2019-12-24T01:18:39.484758100Z 19/12/24 01:18:39 INFO blockmanagement.BlockManager: dfs.block.access.token.enable=false
2019-12-24T01:18:39.487731000Z 19/12/24 01:18:39 INFO blockmanagement.BlockManager: defaultReplication         = 1
2019-12-24T01:18:39.487763300Z 19/12/24 01:18:39 INFO blockmanagement.BlockManager: maxReplication             = 512
2019-12-24T01:18:39.487786100Z 19/12/24 01:18:39 INFO blockmanagement.BlockManager: minReplication             = 1
2019-12-24T01:18:39.487889000Z 19/12/24 01:18:39 INFO blockmanagement.BlockManager: maxReplicationStreams      = 2
2019-12-24T01:18:39.487917700Z 19/12/24 01:18:39 INFO blockmanagement.BlockManager: replicationRecheckInterval = 3000
2019-12-24T01:18:39.487961800Z 19/12/24 01:18:39 INFO blockmanagement.BlockManager: encryptDataTransfer        = false
2019-12-24T01:18:39.488005900Z 19/12/24 01:18:39 INFO blockmanagement.BlockManager: maxNumBlocksToLog          = 1000
2019-12-24T01:18:39.502051600Z 19/12/24 01:18:39 INFO namenode.FSNamesystem: fsOwner             = hdfs (auth:SIMPLE)
2019-12-24T01:18:39.502116400Z 19/12/24 01:18:39 INFO namenode.FSNamesystem: supergroup          = supergroup
2019-12-24T01:18:39.502139600Z 19/12/24 01:18:39 INFO namenode.FSNamesystem: isPermissionEnabled = true
2019-12-24T01:18:39.502411000Z 19/12/24 01:18:39 INFO namenode.FSNamesystem: HA Enabled: false
2019-12-24T01:18:39.506494400Z 19/12/24 01:18:39 INFO namenode.FSNamesystem: Append Enabled: true
2019-12-24T01:18:39.848468700Z 19/12/24 01:18:39 INFO util.GSet: Computing capacity for map INodeMap
2019-12-24T01:18:39.848521500Z 19/12/24 01:18:39 INFO util.GSet: VM type       = 64-bit
2019-12-24T01:18:39.848791500Z 19/12/24 01:18:39 INFO util.GSet: 1.0% max memory 889 MB = 8.9 MB
2019-12-24T01:18:39.848817900Z 19/12/24 01:18:39 INFO util.GSet: capacity      = 2^20 = 1048576 entries
2019-12-24T01:18:39.850994200Z 19/12/24 01:18:39 INFO namenode.FSDirectory: POSIX ACL inheritance enabled? false
2019-12-24T01:18:39.851419000Z 19/12/24 01:18:39 INFO namenode.NameNode: Caching file names occuring more than 10 times
2019-12-24T01:18:39.862104600Z 19/12/24 01:18:39 INFO snapshot.SnapshotManager: Loaded config captureOpenFiles: false, skipCaptureAccessTimeOnlyChange: false, snapshotDiffAllowSnapRootDescendant: true
2019-12-24T01:18:39.870164600Z 19/12/24 01:18:39 INFO util.GSet: Computing capacity for map cachedBlocks
2019-12-24T01:18:39.870269700Z 19/12/24 01:18:39 INFO util.GSet: VM type       = 64-bit
2019-12-24T01:18:39.870293500Z 19/12/24 01:18:39 INFO util.GSet: 0.25% max memory 889 MB = 2.2 MB
2019-12-24T01:18:39.870494000Z 19/12/24 01:18:39 INFO util.GSet: capacity      = 2^18 = 262144 entries
2019-12-24T01:18:39.873142000Z 19/12/24 01:18:39 INFO namenode.FSNamesystem: dfs.namenode.safemode.threshold-pct = 0.9990000128746033
2019-12-24T01:18:39.873164200Z 19/12/24 01:18:39 INFO namenode.FSNamesystem: dfs.namenode.safemode.min.datanodes = 0
2019-12-24T01:18:39.873565900Z 19/12/24 01:18:39 INFO namenode.FSNamesystem: dfs.namenode.safemode.extension     = 0
2019-12-24T01:18:39.880258300Z 19/12/24 01:18:39 INFO metrics.TopMetrics: NNTop conf: dfs.namenode.top.window.num.buckets = 10
2019-12-24T01:18:39.880540600Z 19/12/24 01:18:39 INFO metrics.TopMetrics: NNTop conf: dfs.namenode.top.num.users = 10
2019-12-24T01:18:39.880832300Z 19/12/24 01:18:39 INFO metrics.TopMetrics: NNTop conf: dfs.namenode.top.windows.minutes = 1,5,25
2019-12-24T01:18:39.889994300Z 19/12/24 01:18:39 INFO namenode.FSNamesystem: Retry cache on namenode is enabled
2019-12-24T01:18:39.890464800Z 19/12/24 01:18:39 INFO namenode.FSNamesystem: Retry cache will use 0.03 of total heap and retry cache entry expiry time is 600000 millis
2019-12-24T01:18:39.894750800Z 19/12/24 01:18:39 INFO util.GSet: Computing capacity for map NameNodeRetryCache
2019-12-24T01:18:39.894788500Z 19/12/24 01:18:39 INFO util.GSet: VM type       = 64-bit
2019-12-24T01:18:39.895288200Z 19/12/24 01:18:39 INFO util.GSet: 0.029999999329447746% max memory 889 MB = 273.1 KB
2019-12-24T01:18:39.895324900Z 19/12/24 01:18:39 INFO util.GSet: capacity      = 2^15 = 32768 entries
2019-12-24T01:18:39.942725800Z 19/12/24 01:18:39 INFO namenode.FSNamesystem: ACLs enabled? false
2019-12-24T01:18:39.942770000Z 19/12/24 01:18:39 INFO namenode.FSNamesystem: XAttrs enabled? true
2019-12-24T01:18:39.943245300Z 19/12/24 01:18:39 INFO namenode.FSNamesystem: Maximum size of an xattr: 16384
2019-12-24T01:18:39.991818300Z 19/12/24 01:18:39 INFO namenode.FSImage: Allocated new BlockPoolId: BP-2071264090-172.17.0.2-1577150319960
2019-12-24T01:18:40.013393400Z 19/12/24 01:18:40 INFO common.Storage: Storage directory /data/hadoop/dfs/name has been successfully formatted.
2019-12-24T01:18:40.039026300Z 19/12/24 01:18:40 INFO namenode.FSImageFormatProtobuf: Saving image file /data/hadoop/dfs/name/current/fsimage.ckpt_0000000000000000000 using no compression
2019-12-24T01:18:40.170624500Z 19/12/24 01:18:40 INFO namenode.FSImageFormatProtobuf: Image file /data/hadoop/dfs/name/current/fsimage.ckpt_0000000000000000000 of size 321 bytes saved in 0 seconds.
2019-12-24T01:18:40.206762500Z 19/12/24 01:18:40 INFO namenode.NNStorageRetentionManager: Going to retain 1 images with txid >= 0
2019-12-24T01:18:40.212380200Z 19/12/24 01:18:40 INFO util.ExitUtil: Exiting with status 0
2019-12-24T01:18:40.215387200Z 19/12/24 01:18:40 INFO namenode.NameNode: SHUTDOWN_MSG:
2019-12-24T01:18:40.215421900Z /************************************************************
2019-12-24T01:18:40.215456500Z SHUTDOWN_MSG: Shutting down NameNode at c2ff9d45f912/172.17.0.2
2019-12-24T01:18:40.215477200Z ************************************************************/
2019-12-24T01:18:40.296275300Z starting datanode, logging to /var/log/hadoop-hdfs/hadoop-hdfs-datanode-c2ff9d45f912.out
2019-12-24T01:18:49.315031200Z  * Started Hadoop datanode (hadoop-hdfs-datanode):
2019-12-24T01:18:49.372651600Z starting namenode, logging to /var/log/hadoop-hdfs/hadoop-hdfs-namenode-c2ff9d45f912.out
2019-12-24T01:18:58.395372900Z  * Started Hadoop namenode:
2019-12-24T01:18:58.459891000Z starting secondarynamenode, logging to /var/log/hadoop-hdfs/hadoop-hdfs-secondarynamenode-c2ff9d45f912.out
2019-12-24T01:19:07.445525700Z  * Started Hadoop secondarynamenode:
2019-12-24T01:19:08.791189000Z rmr: DEPRECATED: Please use 'rm -r' instead.
2019-12-24T01:19:10.333334400Z rmr: `/var/lib/hadoop-hdfs/cache/mapred/mapred/staging': No such file or directory
2019-12-24T01:19:10.793457000Z + su -s /bin/bash hdfs -c '/usr/bin/hadoop fs -mkdir -p /tmp'
2019-12-24T01:19:13.619611600Z + su -s /bin/bash hdfs -c '/usr/bin/hadoop fs -chmod -R 1777 /tmp'
2019-12-24T01:19:16.426684200Z + su -s /bin/bash hdfs -c '/usr/bin/hadoop fs -mkdir -p /var'
2019-12-24T01:19:19.207261600Z + su -s /bin/bash hdfs -c '/usr/bin/hadoop fs -mkdir -p /var/log'
2019-12-24T01:19:22.046195100Z + su -s /bin/bash hdfs -c '/usr/bin/hadoop fs -chmod -R 1775 /var/log'
2019-12-24T01:19:25.114179300Z + su -s /bin/bash hdfs -c '/usr/bin/hadoop fs -mkdir -p /var/lib/hadoop-hdfs/cache/mapred/mapred/staging'
2019-12-24T01:19:28.065748100Z + su -s /bin/bash hdfs -c '/usr/bin/hadoop fs -chmod 1777 /var/lib/hadoop-hdfs/cache/mapred/mapred/staging'
2019-12-24T01:19:31.265527300Z + su -s /bin/bash hdfs -c '/usr/bin/hadoop fs -chown -R mapred /var/lib/hadoop-hdfs/cache/mapred'
2019-12-24T01:19:34.264061600Z + sudo -u hdfs hadoop fs -mkdir -p /user/cloudgene
2019-12-24T01:19:37.054209200Z + sudo -u hdfs hadoop fs -chown cloudgene /user/cloudgene
2019-12-24T01:19:47.133971700Z /usr/lib/hadoop-0.20-mapreduce/hadoop-core-2.6.0-mr1-cdh5.14.0.jar
2019-12-24T01:19:47.134011800Z /usr/lib/hadoop-0.20-mapreduce/hadoop-core-mr1.jar
2019-12-24T01:19:47.139882500Z starting jobtracker, logging to /var/log/hadoop-0.20-mapreduce/hadoop-hadoop-jobtracker-c2ff9d45f912.out
2019-12-24T01:19:47.149499900Z /usr/lib/hadoop-0.20-mapreduce/hadoop-core-2.6.0-mr1-cdh5.14.0.jar
2019-12-24T01:19:47.149533400Z /usr/lib/hadoop-0.20-mapreduce/hadoop-core-mr1.jar
2019-12-24T01:19:53.670656600Z  * Started Hadoop jobtracker:
2019-12-24T01:19:53.727268900Z /usr/lib/hadoop-0.20-mapreduce/hadoop-core-2.6.0-mr1-cdh5.14.0.jar
2019-12-24T01:19:53.727308900Z /usr/lib/hadoop-0.20-mapreduce/hadoop-core-mr1.jar
2019-12-24T01:19:53.733113400Z starting tasktracker, logging to /var/log/hadoop-0.20-mapreduce/hadoop-hadoop-tasktracker-c2ff9d45f912.out
2019-12-24T01:19:53.743558100Z /usr/lib/hadoop-0.20-mapreduce/hadoop-core-2.6.0-mr1-cdh5.14.0.jar
2019-12-24T01:19:53.743599000Z /usr/lib/hadoop-0.20-mapreduce/hadoop-core-mr1.jar
2019-12-24T01:20:00.231981800Z  * Started Hadoop tasktracker:
2019-12-24T01:20:00.235597300Z Congratulations! Cluster is running on 172.17.0.2
2019-12-24T01:20:00.529896600Z
2019-12-24T01:20:00.529926600Z Cloudgene 2.0.0
2019-12-24T01:20:00.529944000Z http://www.cloudgene.io
2019-12-24T01:20:00.529961000Z (c) 2009-2019 Lukas Forer and Sebastian Schoenherr
2019-12-24T01:20:00.537892800Z Built by null on null
2019-12-24T01:20:00.538206800Z Built by null on null
2019-12-24T01:20:00.538233600Z
2019-12-24T01:20:00.947881300Z SLF4J: Class path contains multiple SLF4J bindings.
2019-12-24T01:20:00.948100300Z SLF4J: Found binding in [jar:file:/opt/cloudgene/lib/slf4j-log4j12-1.6.1.jar!/org/slf4j/impl/StaticLoggerBinder.class]
2019-12-24T01:20:00.948294500Z SLF4J: Found binding in [jar:file:/usr/lib/zookeeper/lib/slf4j-log4j12-1.7.5.jar!/org/slf4j/impl/StaticLoggerBinder.class]
2019-12-24T01:20:00.948494600Z SLF4J: See http://www.slf4j.org/codes.html#multiple_bindings for an explanation.
2019-12-24T01:20:01.051023500Z Use Haddop configuration folder /etc/hadoop/conf
2019-12-24T01:20:01.203384000Z 19/12/24 01:20:01 INFO mapred.Main: Cloudgene 2.0.0
2019-12-24T01:20:01.203914700Z 19/12/24 01:20:01 INFO mapred.Main: Built by null on null
2019-12-24T01:20:01.237680100Z 19/12/24 01:20:01 INFO mapred.Main: Establish connection successful
2019-12-24T01:20:01.578697600Z 19/12/24 01:20:01 INFO mapred.Main: Database needs update.
2019-12-24T01:20:01.733082700Z 19/12/24 01:20:01 INFO util.Fixtures: User admin created.
2019-12-24T01:20:01.736633600Z 19/12/24 01:20:01 INFO util.Fixtures: Template MAINTENANCE_MESSAGE created.
2019-12-24T01:20:01.737551400Z 19/12/24 01:20:01 INFO util.Fixtures: Template FOOTER created.
2019-12-24T01:20:01.738002400Z 19/12/24 01:20:01 INFO util.Fixtures: Template REGISTER_MAIL created.
2019-12-24T01:20:01.738449900Z 19/12/24 01:20:01 INFO util.Fixtures: Template RETIRE_JOB_MAIL created.
2019-12-24T01:20:01.739003900Z 19/12/24 01:20:01 INFO util.Fixtures: Template RECOVERY_MAIL created.
2019-12-24T01:20:01.760729000Z 19/12/24 01:20:01 INFO jobs.PersistentWorkflowEngine: Init Counters....
2019-12-24T01:20:01.818778000Z 19/12/24 01:20:01 INFO mapred.Main: Starting web server at port 80
2019-12-24T01:20:01.878083600Z 19/12/24 01:20:01 INFO mapred.WebServer: Start CronJobScheduler...
2019-12-24T01:20:02.736597900Z Init HadoopUtil 172.17.0.2:8021
2019-12-24T01:20:04.163375300Z [INFO]  Cluster has 1 nodes, 4 map tasks and 4 reduce tasks
2019-12-24T01:20:04.165468500Z [WARN]  Docker Binary not found. Docker support disabled.
2019-12-24T01:20:04.165834000Z [WARN]  RScript is configured to use Docker, but Docker is not installed.
2019-12-24T01:20:04.166154000Z [WARN]  RMarkdown support enabled. Using docker image genepi/r-cran-docker:latest
2019-12-24T01:20:04.167390100Z [WARN]  Nextflow Binary not found. Nextflow support disabled.
2019-12-24T01:20:04.167414700Z
2019-12-24T01:20:04.167429400Z Server is running on http://localhost:80
2019-12-24T01:20:04.167469200Z
2019-12-24T01:20:04.167658700Z Please press ctrl-c to stop.
2019-12-24T01:20:27.843782300Z 19/12/24 01:20:27 INFO LogService: 2019-12-24	01:20:27	172.17.0.1	-	172.17.0.2	80	GET	/index.html	-	200	-	0	245	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	-
2019-12-24T01:20:28.740427300Z 19/12/24 01:20:28 INFO LogService: 2019-12-24	01:20:28	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server	-	200	654	0	235	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2019-12-24T01:20:28.845951700Z 19/12/24 01:20:28 INFO LogService: 2019-12-24	01:20:28	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server/counters	-	200	51	0	6http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2019-12-24T01:20:59.238811700Z 19/12/24 01:20:59 INFO LogService: 2019-12-24	01:20:59	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server/counters	-	200	51	0	2http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2019-12-24T01:21:01.176265700Z 19/12/24 01:21:01 INFO LogService: 2019-12-24	01:21:01	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/jobs	page=1	200	41	0	14	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2019-12-24T01:21:02.804561800Z populations
2019-12-24T01:21:02.811237300Z 19/12/24 01:21:02 INFO LogService: 2019-12-24	01:21:02	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server/apps/imputationserver%401.2.1	-	200	3460	0	82	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2019-12-24T01:21:02.953006700Z 19/12/24 01:21:02 INFO LogService: 2019-12-24	01:21:02	172.17.0.1	-	172.17.0.2	80	GET	/dist/node_modules/@fortawesome/fontawesome-free/webfonts/fa-regular-400.woff2	-	304	0	0	13	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/dist/bundles/admin-index.css
2019-12-24T01:21:41.309994200Z 19/12/24 01:21:41 INFO LogService: 2019-12-24	01:21:41	172.17.0.1	-	172.17.0.2	80	GET	/admin.html	-	200	-	0	24	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2019-12-24T01:21:41.343680500Z 19/12/24 01:21:41 INFO LogService: 2019-12-24	01:21:41	172.17.0.1	-	172.17.0.2	80	GET	/assets/css/loader.css	-	304	0	0	4http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2019-12-24T01:21:41.343731900Z 19/12/24 01:21:41 INFO LogService: 2019-12-24	01:21:41	172.17.0.1	-	172.17.0.2	80	GET	/dist/bundles/cloudgene/admin.js	-	304	00	2	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2019-12-24T01:21:41.409906300Z 19/12/24 01:21:41 INFO LogService: 2019-12-24	01:21:41	172.17.0.1	-	172.17.0.2	80	GET	/dist/bundles/admin-index.js	-	304	0	02	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2019-12-24T01:21:41.617544300Z 19/12/24 01:21:41 INFO LogService: 2019-12-24	01:21:41	172.17.0.1	-	172.17.0.2	80	GET	/dist/bundles/admin-index.css	-	304	0	03	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2019-12-24T01:21:41.801602700Z 19/12/24 01:21:41 INFO LogService: 2019-12-24	01:21:41	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server	-	200	654	0	21	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2019-12-24T01:21:41.828902600Z 19/12/24 01:21:41 INFO LogService: 2019-12-24	01:21:41	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server/counters	-	200	51	0	2http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2019-12-24T01:21:41.849686700Z 19/12/24 01:21:41 INFO LogService: 2019-12-24	01:21:41	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/admin/server/statistics	days=1	200	2	07	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2019-12-24T01:21:44.518140900Z 19/12/24 01:21:44 INFO LogService: 2019-12-24	01:21:44	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server/apps	-	200	18542	0	184	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2019-12-24T01:21:44.553272500Z 19/12/24 01:21:44 INFO LogService: 2019-12-24	01:21:44	172.17.0.1	-	172.17.0.2	80	GET	/dist/node_modules/@fortawesome/fontawesome-free/webfonts/fa-regular-400.woff2	-	304	0	0	2	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/dist/bundles/admin-index.css
2019-12-24T01:21:44.557788000Z 19/12/24 01:21:44 INFO LogService: 2019-12-24	01:21:44	172.17.0.1	-	172.17.0.2	80	GET	/dist/node_modules/@fortawesome/fontawesome-free/webfonts/fa-solid-900.woff2	-	304	0	0	4	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/dist/bundles/admin-index.css
2019-12-24T01:21:48.000992300Z 19/12/24 01:21:48 INFO LogService: 2019-12-24	01:21:48	172.17.0.1	-	172.17.0.2	80	GET	/dist/node_modules/@fortawesome/fontawesome-free/webfonts/fa-brands-400.woff2	-	304	0	0	1	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/dist/bundles/admin-index.css
2019-12-24T01:21:49.706801200Z 19/12/24 01:21:49 INFO LogService: 2019-12-24	01:21:49	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server/apps	-	200	18542	0	144	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2019-12-24T01:21:49.840702200Z 19/12/24 01:21:49 INFO LogService: 2019-12-24	01:21:49	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server/cloudgene-apps	-	304	0	0117	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2019-12-24T13:25:32.362204200Z javax.net.ssl.SSLException: SSL peer shut down incorrectly
2019-12-24T13:25:32.432094300Z 	at sun.security.ssl.InputRecord.readV3Record(InputRecord.java:596)
2019-12-24T13:25:32.432131200Z 	at sun.security.ssl.InputRecord.read(InputRecord.java:532)
2019-12-24T13:25:32.432149900Z 	at sun.security.ssl.SSLSocketImpl.readRecord(SSLSocketImpl.java:983)
2019-12-24T13:25:32.432168100Z 	at sun.security.ssl.SSLSocketImpl.readDataRecord(SSLSocketImpl.java:940)
2019-12-24T13:25:32.432186000Z 	at sun.security.ssl.AppInputStream.read(AppInputStream.java:105)
2019-12-24T13:25:32.432203900Z 	at java.io.BufferedInputStream.fill(BufferedInputStream.java:246)
2019-12-24T13:25:32.432221800Z 	at java.io.BufferedInputStream.read1(BufferedInputStream.java:286)
2019-12-24T13:25:32.432240700Z 	at java.io.BufferedInputStream.read(BufferedInputStream.java:345)
2019-12-24T13:25:32.432258600Z 	at sun.net.www.MeteredStream.read(MeteredStream.java:134)
2019-12-24T13:25:32.432276300Z 	at java.io.FilterInputStream.read(FilterInputStream.java:133)
2019-12-24T13:25:32.432294200Z 	at sun.net.www.protocol.http.HttpURLConnection$HttpInputStream.read(HttpURLConnection.java:3393)
2019-12-24T13:25:32.432325600Z 	at sun.net.www.protocol.http.HttpURLConnection$HttpInputStream.read(HttpURLConnection.java:3386)
2019-12-24T13:25:32.432343600Z 	at org.apache.commons.io.IOUtils.copyLarge(IOUtils.java:1792)
2019-12-24T13:25:32.432361400Z 	at org.apache.commons.io.IOUtils.copyLarge(IOUtils.java:1769)
2019-12-24T13:25:32.432398800Z 	at org.apache.commons.io.IOUtils.copy(IOUtils.java:1744)
2019-12-24T13:25:32.432418300Z 	at org.apache.commons.io.FileUtils.copyInputStreamToFile(FileUtils.java:1512)
2019-12-24T13:25:32.432437800Z 	at org.apache.commons.io.FileUtils.copyURLToFile(FileUtils.java:1461)
2019-12-24T13:25:32.432456600Z 	at cloudgene.mapred.apps.ApplicationRepository.installFromUrl(ApplicationRepository.java:254)
2019-12-24T13:25:32.432474900Z 	at cloudgene.mapred.apps.ApplicationRepository.install(ApplicationRepository.java:197)
2019-12-24T13:25:32.432494700Z 	at cloudgene.mapred.api.v2.server.Apps.install(Apps.java:62)
2019-12-24T13:25:32.432514300Z 	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
2019-12-24T13:25:32.432533900Z 	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
2019-12-24T13:25:32.432553400Z 	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
2019-12-24T13:25:32.432572900Z 	at java.lang.reflect.Method.invoke(Method.java:498)
2019-12-24T13:25:32.432592400Z 	at org.restlet.resource.ServerResource.doHandle(ServerResource.java:508)
2019-12-24T13:25:32.432641900Z 	at org.restlet.resource.ServerResource.post(ServerResource.java:1341)
2019-12-24T13:25:32.432660400Z 	at org.restlet.resource.ServerResource.doHandle(ServerResource.java:606)
2019-12-24T13:25:32.432678700Z 	at org.restlet.resource.ServerResource.doNegotiatedHandle(ServerResource.java:662)
2019-12-24T13:25:32.432699200Z 	at org.restlet.resource.ServerResource.doConditionalHandle(ServerResource.java:348)
2019-12-24T13:25:32.432718800Z 	at org.restlet.resource.ServerResource.handle(ServerResource.java:1020)
2019-12-24T13:25:32.432753300Z 	at org.restlet.resource.Finder.handle(Finder.java:236)
2019-12-24T13:25:32.432770900Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T13:25:32.432799900Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T13:25:32.432819600Z 	at org.restlet.routing.Router.doHandle(Router.java:422)
2019-12-24T13:25:32.432836500Z 	at org.restlet.routing.Router.handle(Router.java:641)
2019-12-24T13:25:32.432853000Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T13:25:32.432871600Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T13:25:32.432889200Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T13:25:32.432901500Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T13:25:32.432915400Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T13:25:32.432932800Z 	at org.restlet.engine.application.StatusFilter.doHandle(StatusFilter.java:140)
2019-12-24T13:25:32.432950000Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T13:25:32.432967300Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T13:25:32.432984500Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T13:25:32.433003500Z 	at org.restlet.engine.CompositeHelper.handle(CompositeHelper.java:202)
2019-12-24T13:25:32.433020800Z 	at org.restlet.engine.application.ApplicationHelper.handle(ApplicationHelper.java:77)
2019-12-24T13:25:32.433038100Z 	at org.restlet.Application.handle(Application.java:385)
2019-12-24T13:25:32.433054600Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T13:25:32.433070000Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T13:25:32.433087500Z 	at org.restlet.routing.Router.doHandle(Router.java:422)
2019-12-24T13:25:32.433104600Z 	at org.restlet.routing.Router.handle(Router.java:641)
2019-12-24T13:25:32.433121800Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T13:25:32.433138900Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T13:25:32.433156100Z 	at org.restlet.routing.Router.doHandle(Router.java:422)
2019-12-24T13:25:32.433173200Z 	at org.restlet.routing.Router.handle(Router.java:641)
2019-12-24T13:25:32.433194500Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T13:25:32.433212200Z 	at org.restlet.engine.application.StatusFilter.doHandle(StatusFilter.java:140)
2019-12-24T13:25:32.433231000Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T13:25:32.433248500Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T13:25:32.433280300Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T13:25:32.433317600Z 	at org.restlet.engine.CompositeHelper.handle(CompositeHelper.java:202)
2019-12-24T13:25:32.433335900Z 	at org.restlet.Component.handle(Component.java:408)
2019-12-24T13:25:32.433355400Z 	at org.restlet.Server.handle(Server.java:507)
2019-12-24T13:25:32.433372900Z 	at org.restlet.engine.connector.ServerHelper.handle(ServerHelper.java:63)
2019-12-24T13:25:32.433389200Z 	at org.restlet.engine.adapter.HttpServerHelper.handle(HttpServerHelper.java:143)
2019-12-24T13:25:32.433404700Z 	at org.restlet.ext.jetty.JettyServerHelper$WrappedServer.handle(JettyServerHelper.java:256)
2019-12-24T13:25:32.433422300Z 	at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:311)
2019-12-24T13:25:32.433439400Z 	at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:257)
2019-12-24T13:25:32.433456700Z 	at org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:544)
2019-12-24T13:25:32.433474000Z 	at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:635)
2019-12-24T13:25:32.433491300Z 	at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:555)
2019-12-24T13:25:32.433508600Z 	at java.lang.Thread.run(Thread.java:748)
2019-12-24T13:25:32.559335700Z 19/12/24 13:25:32 ERROR server.Apps: Application not installed.
2019-12-24T13:25:32.559377700Z javax.net.ssl.SSLException: SSL peer shut down incorrectly
2019-12-24T13:25:32.559397800Z 	at sun.security.ssl.InputRecord.readV3Record(InputRecord.java:596)
2019-12-24T13:25:32.559415800Z 	at sun.security.ssl.InputRecord.read(InputRecord.java:532)
2019-12-24T13:25:32.559435500Z 	at sun.security.ssl.SSLSocketImpl.readRecord(SSLSocketImpl.java:983)
2019-12-24T13:25:32.559454700Z 	at sun.security.ssl.SSLSocketImpl.readDataRecord(SSLSocketImpl.java:940)
2019-12-24T13:25:32.559473700Z 	at sun.security.ssl.AppInputStream.read(AppInputStream.java:105)
2019-12-24T13:25:32.559489000Z 	at java.io.BufferedInputStream.fill(BufferedInputStream.java:246)
2019-12-24T13:25:32.559508800Z 	at java.io.BufferedInputStream.read1(BufferedInputStream.java:286)
2019-12-24T13:25:32.559528200Z 	at java.io.BufferedInputStream.read(BufferedInputStream.java:345)
2019-12-24T13:25:32.559547700Z 	at sun.net.www.MeteredStream.read(MeteredStream.java:134)
2019-12-24T13:25:32.559567200Z 	at java.io.FilterInputStream.read(FilterInputStream.java:133)
2019-12-24T13:25:32.559593800Z 	at sun.net.www.protocol.http.HttpURLConnection$HttpInputStream.read(HttpURLConnection.java:3393)
2019-12-24T13:25:32.559613500Z 	at sun.net.www.protocol.http.HttpURLConnection$HttpInputStream.read(HttpURLConnection.java:3386)
2019-12-24T13:25:32.559633100Z 	at org.apache.commons.io.IOUtils.copyLarge(IOUtils.java:1792)
2019-12-24T13:25:32.559652600Z 	at org.apache.commons.io.IOUtils.copyLarge(IOUtils.java:1769)
2019-12-24T13:25:32.559671900Z 	at org.apache.commons.io.IOUtils.copy(IOUtils.java:1744)
2019-12-24T13:25:32.559692400Z 	at org.apache.commons.io.FileUtils.copyInputStreamToFile(FileUtils.java:1512)
2019-12-24T13:25:32.559802900Z 	at org.apache.commons.io.FileUtils.copyURLToFile(FileUtils.java:1461)
2019-12-24T13:25:32.559836800Z 	at cloudgene.mapred.apps.ApplicationRepository.installFromUrl(ApplicationRepository.java:254)
2019-12-24T13:25:32.559856500Z 	at cloudgene.mapred.apps.ApplicationRepository.install(ApplicationRepository.java:197)
2019-12-24T13:25:32.559876000Z 	at cloudgene.mapred.api.v2.server.Apps.install(Apps.java:62)
2019-12-24T13:25:32.559889800Z 	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
2019-12-24T13:25:32.559907400Z 	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
2019-12-24T13:25:32.559923800Z 	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
2019-12-24T13:25:32.559943400Z 	at java.lang.reflect.Method.invoke(Method.java:498)
2019-12-24T13:25:32.559962900Z 	at org.restlet.resource.ServerResource.doHandle(ServerResource.java:508)
2019-12-24T13:25:32.559982300Z 	at org.restlet.resource.ServerResource.post(ServerResource.java:1341)
2019-12-24T13:25:32.559996900Z 	at org.restlet.resource.ServerResource.doHandle(ServerResource.java:606)
2019-12-24T13:25:32.560013000Z 	at org.restlet.resource.ServerResource.doNegotiatedHandle(ServerResource.java:662)
2019-12-24T13:25:32.560032500Z 	at org.restlet.resource.ServerResource.doConditionalHandle(ServerResource.java:348)
2019-12-24T13:25:32.560051900Z 	at org.restlet.resource.ServerResource.handle(ServerResource.java:1020)
2019-12-24T13:25:32.560065800Z 	at org.restlet.resource.Finder.handle(Finder.java:236)
2019-12-24T13:25:32.560085300Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T13:25:32.560100300Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T13:25:32.560120000Z 	at org.restlet.routing.Router.doHandle(Router.java:422)
2019-12-24T13:25:32.560138700Z 	at org.restlet.routing.Router.handle(Router.java:641)
2019-12-24T13:25:32.560153300Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T13:25:32.560172900Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T13:25:32.560187800Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T13:25:32.560206800Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T13:25:32.560230900Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T13:25:32.560250300Z 	at org.restlet.engine.application.StatusFilter.doHandle(StatusFilter.java:140)
2019-12-24T13:25:32.560269900Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T13:25:32.560289400Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T13:25:32.560308700Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T13:25:32.560327900Z 	at org.restlet.engine.CompositeHelper.handle(CompositeHelper.java:202)
2019-12-24T13:25:32.560341900Z 	at org.restlet.engine.application.ApplicationHelper.handle(ApplicationHelper.java:77)
2019-12-24T13:25:32.560360700Z 	at org.restlet.Application.handle(Application.java:385)
2019-12-24T13:25:32.560379300Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T13:25:32.560398700Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T13:25:32.560418100Z 	at org.restlet.routing.Router.doHandle(Router.java:422)
2019-12-24T13:25:32.560437600Z 	at org.restlet.routing.Router.handle(Router.java:641)
2019-12-24T13:25:32.560457000Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T13:25:32.560476200Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T13:25:32.560493300Z 	at org.restlet.routing.Router.doHandle(Router.java:422)
2019-12-24T13:25:32.560512900Z 	at org.restlet.routing.Router.handle(Router.java:641)
2019-12-24T13:25:32.560527900Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T13:25:32.560546700Z 	at org.restlet.engine.application.StatusFilter.doHandle(StatusFilter.java:140)
2019-12-24T13:25:32.560564900Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T13:25:32.560578700Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2019-12-24T13:25:32.560598300Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2019-12-24T13:25:32.560618200Z 	at org.restlet.engine.CompositeHelper.handle(CompositeHelper.java:202)
2019-12-24T13:25:32.560637800Z 	at org.restlet.Component.handle(Component.java:408)
2019-12-24T13:25:32.560663900Z 	at org.restlet.Server.handle(Server.java:507)
2019-12-24T13:25:32.560681200Z 	at org.restlet.engine.connector.ServerHelper.handle(ServerHelper.java:63)
2019-12-24T13:25:32.560700900Z 	at org.restlet.engine.adapter.HttpServerHelper.handle(HttpServerHelper.java:143)
2019-12-24T13:25:32.560719700Z 	at org.restlet.ext.jetty.JettyServerHelper$WrappedServer.handle(JettyServerHelper.java:256)
2019-12-24T13:25:32.560738000Z 	at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:311)
2019-12-24T13:25:32.560757400Z 	at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:257)
2019-12-24T13:25:32.560776800Z 	at org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:544)
2019-12-24T13:25:32.560802800Z 	at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:635)
2019-12-24T13:25:32.560822500Z 	at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:555)
2019-12-24T13:25:32.560836800Z 	at java.lang.Thread.run(Thread.java:748)
2019-12-24T13:25:32.562992200Z 19/12/24 13:25:32 INFO LogService: 2019-12-24	13:25:32	172.17.0.1	-	172.17.0.2	80	POST	/api/v2/server/apps	-	400	57	111	43407959	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2020-01-03T01:05:58.412661300Z 20/01/03 01:05:58 INFO LogService: 2020-01-03	01:05:58	172.17.0.1	-	172.17.0.2	80	GET	/index.html	-	200	-	0	67	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	-
2020-01-03T01:05:58.483952200Z 20/01/03 01:05:58 INFO LogService: 2020-01-03	01:05:58	172.17.0.1	-	172.17.0.2	80	GET	/dist/bundles/cloudgene/index.js	-	200	368826	0	11	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2020-01-03T01:05:58.487911500Z 20/01/03 01:05:58 INFO LogService: 2020-01-03	01:05:58	172.17.0.1	-	172.17.0.2	80	GET	/assets/css/loader.css	-	304	0	0	15	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2020-01-03T01:05:58.693813600Z 20/01/03 01:05:58 INFO LogService: 2020-01-03	01:05:58	172.17.0.1	-	172.17.0.2	80	GET	/dist/bundles/admin-index.js	-	200	530054	02	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2020-01-03T01:05:58.859733400Z 20/01/03 01:05:58 INFO LogService: 2020-01-03	01:05:58	172.17.0.1	-	172.17.0.2	80	GET	/dist/bundles/admin-index.css	-	200	194867	01	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2020-01-03T01:05:59.063051200Z 20/01/03 01:05:59 INFO LogService: 2020-01-03	01:05:59	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server	-	200	484	0	35	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2020-01-03T01:05:59.109830600Z 20/01/03 01:05:59 INFO LogService: 2020-01-03	01:05:59	172.17.0.1	-	172.17.0.2	80	GET	/static/home.stache	-	304	0	0	9http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2020-01-03T01:05:59.216616300Z 20/01/03 01:05:59 INFO LogService: 2020-01-03	01:05:59	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server/counters	-	200	51	0	2http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2020-01-03T01:05:59.286557300Z 20/01/03 01:05:59 INFO LogService: 2020-01-03	01:05:59	172.17.0.1	-	172.17.0.2	80	GET	/dist/node_modules/@fortawesome/fontawesome-free/webfonts/fa-solid-900.woff2	-	200	67400	0	2	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/dist/bundles/admin-index.css
2020-01-03T01:06:18.373276300Z 20/01/03 01:06:18 INFO LogService: 2020-01-03	01:06:18	172.17.0.1	-	172.17.0.2	80	GET	/static/home.stache	-	304	0	0	3http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2020-01-03T01:06:18.424847600Z 20/01/03 01:06:18 INFO LogService: 2020-01-03	01:06:18	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server/counters	-	200	51	0	4http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2020-01-03T01:07:24.156254000Z 20/01/03 01:07:24 INFO LogService: 2020-01-03	01:07:24	172.17.0.1	-	172.17.0.2	80	POST	/login	-	200	-	43	93	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2020-01-03T01:07:24.239363500Z 20/01/03 01:07:24 INFO LogService: 2020-01-03	01:07:24	172.17.0.1	-	172.17.0.2	80	GET	/index.html	-	200	-	0	52	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2020-01-03T01:07:24.278856400Z 20/01/03 01:07:24 INFO LogService: 2020-01-03	01:07:24	172.17.0.1	-	172.17.0.2	80	GET	/assets/css/loader.css	-	304	0	0	3http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2020-01-03T01:07:24.719413400Z 20/01/03 01:07:24 INFO LogService: 2020-01-03	01:07:24	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server	-	200	654	0	19	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2020-01-03T01:07:24.759354100Z 20/01/03 01:07:24 INFO LogService: 2020-01-03	01:07:24	172.17.0.1	-	172.17.0.2	80	GET	/static/home.stache	-	304	0	0	3http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2020-01-03T01:07:24.837683600Z 20/01/03 01:07:24 INFO LogService: 2020-01-03	01:07:24	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server/counters	-	200	51	0	2http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2020-01-03T01:08:00.394704100Z 20/01/03 01:08:00 INFO LogService: 2020-01-03	01:08:00	172.17.0.1	-	172.17.0.2	80	GET	/admin.html	-	200	-	0	7	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2020-01-03T01:08:00.435161800Z 20/01/03 01:08:00 INFO LogService: 2020-01-03	01:08:00	172.17.0.1	-	172.17.0.2	80	GET	/dist/bundles/cloudgene/admin.js	-	200	475051	0	2	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2020-01-03T01:08:00.436003800Z 20/01/03 01:08:00 INFO LogService: 2020-01-03	01:08:00	172.17.0.1	-	172.17.0.2	80	GET	/assets/css/loader.css	-	304	0	0	2http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2020-01-03T01:08:00.849356000Z 20/01/03 01:08:00 INFO LogService: 2020-01-03	01:08:00	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server	-	200	654	0	5	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2020-01-03T01:08:00.876011500Z 20/01/03 01:08:00 INFO LogService: 2020-01-03	01:08:00	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server/counters	-	200	51	0	2http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2020-01-03T01:08:00.898256800Z 20/01/03 01:08:00 INFO LogService: 2020-01-03	01:08:00	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/admin/server/statistics	days=1	200	349	011	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2020-01-03T01:08:03.737046100Z 20/01/03 01:08:03 INFO LogService: 2020-01-03	01:08:03	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server	-	200	654	0	6	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2020-01-03T01:08:03.775207500Z 20/01/03 01:08:03 INFO LogService: 2020-01-03	01:08:03	172.17.0.1	-	172.17.0.2	80	GET	/static/home.stache	-	304	0	0	2http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2020-01-03T01:08:03.786765500Z 20/01/03 01:08:03 INFO LogService: 2020-01-03	01:08:03	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server/counters	-	200	51	0	1http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2020-01-03T01:08:04.958377500Z 20/01/03 01:08:04 INFO LogService: 2020-01-03	01:08:04	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/users/me/profile	-	200	176	07	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2020-01-03T01:08:07.605326100Z 20/01/03 01:08:07 INFO LogService: 2020-01-03	01:08:07	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/jobs	page=1	200	41	0	5	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2020-01-03T01:08:09.217591900Z 20/01/03 01:08:09 INFO LogService: 2020-01-03	01:08:09	172.17.0.1	-	172.17.0.2	80	GET	/admin.html	-	200	-	0	5	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/index.html
2020-01-03T01:08:09.267187200Z 20/01/03 01:08:09 INFO LogService: 2020-01-03	01:08:09	172.17.0.1	-	172.17.0.2	80	GET	/assets/css/loader.css	-	304	0	0	3http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2020-01-03T01:08:09.599488900Z 20/01/03 01:08:09 INFO LogService: 2020-01-03	01:08:09	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server	-	200	654	0	4	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2020-01-03T01:08:09.617196100Z 20/01/03 01:08:09 INFO LogService: 2020-01-03	01:08:09	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server/counters	-	200	51	0	3http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2020-01-03T01:08:09.645040700Z 20/01/03 01:08:09 INFO LogService: 2020-01-03	01:08:09	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/admin/server/statistics	days=1	200	349	05	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2020-01-03T01:08:12.483287900Z 20/01/03 01:08:12 INFO LogService: 2020-01-03	01:08:12	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server/apps	-	200	18542	0	400	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2020-01-03T01:08:12.523767100Z 20/01/03 01:08:12 INFO LogService: 2020-01-03	01:08:12	172.17.0.1	-	172.17.0.2	80	GET	/dist/node_modules/@fortawesome/fontawesome-free/webfonts/fa-regular-400.woff2	-	304	0	0	1	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/dist/bundles/admin-index.css
2020-01-03T01:08:14.758994900Z 20/01/03 01:08:14 INFO LogService: 2020-01-03	01:08:14	172.17.0.1	-	172.17.0.2	80	GET	/dist/node_modules/@fortawesome/fontawesome-free/webfonts/fa-brands-400.woff2	-	200	65316	0	1	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/dist/bundles/admin-index.css
2020-01-03T01:08:15.743870100Z 20/01/03 01:08:15 INFO LogService: 2020-01-03	01:08:15	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server/apps	-	200	18542	0	149	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2020-01-03T01:08:15.824249600Z 20/01/03 01:08:15 INFO LogService: 2020-01-03	01:08:15	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server/cloudgene-apps	-	304	0	066	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2020-01-03T01:08:54.119738000Z 20/01/03 01:08:54 INFO LogService: 2020-01-03	01:08:54	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server/apps	-	200	18542	0	129	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2020-01-03T01:09:19.001674900Z 20/01/03 01:09:19 INFO LogService: 2020-01-03	01:09:19	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server/apps	-	200	18542	0	124	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2020-01-03T01:09:19.053080100Z 20/01/03 01:09:19 INFO LogService: 2020-01-03	01:09:19	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server/cloudgene-apps	-	304	0	040	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2020-01-03T01:09:37.790738800Z 20/01/03 01:09:37 INFO LogService: 2020-01-03	01:09:37	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server/apps	-	200	18542	0	129	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2020-01-03T01:13:48.237438900Z 20/01/03 01:13:48 INFO apps.ApplicationRepository: Reload applications...
2020-01-03T01:13:48.237486000Z 20/01/03 01:13:48 INFO apps.ApplicationRepository: Register application imputationserver@1.2.1
2020-01-03T01:13:48.237512200Z 20/01/03 01:13:48 INFO apps.ApplicationRepository: Load workflow file /data/apps/imputationserver/1.2.1/minimac4.yaml
2020-01-03T01:13:48.258551400Z 20/01/03 01:13:48 INFO apps.ApplicationRepository: Register application hapmap-2@2.0.0
2020-01-03T01:13:48.258588700Z 20/01/03 01:13:48 INFO apps.ApplicationRepository: Load workflow file /data/apps/hapmap-2/2.0.0/imputation-hapmap2.yaml
2020-01-03T01:13:48.260721200Z 20/01/03 01:13:48 INFO apps.ApplicationRepository: Loaded 2 applications.
2020-01-03T01:13:48.395509000Z 20/01/03 01:13:48 INFO LogService: 2020-01-03	01:13:48	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server/apps	reload=true	200	18542	0160	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2020-01-03T01:13:50.171177900Z 20/01/03 01:13:50 INFO LogService: 2020-01-03	01:13:50	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server/apps	-	200	18542	0	115	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2020-01-03T01:13:50.195650600Z 20/01/03 01:13:50 INFO LogService: 2020-01-03	01:13:50	172.17.0.1	-	172.17.0.2	80	GET	/api/v2/server/cloudgene-apps	-	304	0	014	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2020-01-03T01:14:29.669386600Z java.io.IOException: net.lingala.zip4j.exception.ZipException: zip headers not found. probably not a zip file
2020-01-03T01:14:29.669753700Z 	at cloudgene.mapred.apps.ApplicationRepository.installFromZipFile(ApplicationRepository.java:352)
2020-01-03T01:14:29.669777600Z 	at cloudgene.mapred.apps.ApplicationRepository.installFromUrl(ApplicationRepository.java:255)
2020-01-03T01:14:29.669804200Z 	at cloudgene.mapred.apps.ApplicationRepository.install(ApplicationRepository.java:197)
2020-01-03T01:14:29.669826600Z 	at cloudgene.mapred.api.v2.server.Apps.install(Apps.java:62)
2020-01-03T01:14:29.669846600Z 	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
2020-01-03T01:14:29.669868700Z 	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
2020-01-03T01:14:29.669890600Z 	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
2020-01-03T01:14:29.669908200Z 	at java.lang.reflect.Method.invoke(Method.java:498)
2020-01-03T01:14:29.669937800Z 	at org.restlet.resource.ServerResource.doHandle(ServerResource.java:508)
2020-01-03T01:14:29.669960200Z 	at org.restlet.resource.ServerResource.post(ServerResource.java:1341)
2020-01-03T01:14:29.669977400Z 	at org.restlet.resource.ServerResource.doHandle(ServerResource.java:606)
2020-01-03T01:14:29.670004400Z 	at org.restlet.resource.ServerResource.doNegotiatedHandle(ServerResource.java:662)
2020-01-03T01:14:29.670033900Z 	at org.restlet.resource.ServerResource.doConditionalHandle(ServerResource.java:348)
2020-01-03T01:14:29.670055800Z 	at org.restlet.resource.ServerResource.handle(ServerResource.java:1020)
2020-01-03T01:14:29.670092000Z 	at org.restlet.resource.Finder.handle(Finder.java:236)
2020-01-03T01:14:29.670118200Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:14:29.670140400Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:14:29.670172700Z 	at org.restlet.routing.Router.doHandle(Router.java:422)
2020-01-03T01:14:29.670195000Z 	at org.restlet.routing.Router.handle(Router.java:641)
2020-01-03T01:14:29.670217500Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:14:29.670237100Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:14:29.670265400Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:14:29.670287700Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:14:29.670316200Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:14:29.670332200Z 	at org.restlet.engine.application.StatusFilter.doHandle(StatusFilter.java:140)
2020-01-03T01:14:29.670367200Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:14:29.670388700Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:14:29.670418300Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:14:29.670434000Z 	at org.restlet.engine.CompositeHelper.handle(CompositeHelper.java:202)
2020-01-03T01:14:29.670459900Z 	at org.restlet.engine.application.ApplicationHelper.handle(ApplicationHelper.java:77)
2020-01-03T01:14:29.670477100Z 	at org.restlet.Application.handle(Application.java:385)
2020-01-03T01:14:29.670511700Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:14:29.670539400Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:14:29.670556600Z 	at org.restlet.routing.Router.doHandle(Router.java:422)
2020-01-03T01:14:29.670586300Z 	at org.restlet.routing.Router.handle(Router.java:641)
2020-01-03T01:14:29.670607600Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:14:29.670630100Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:14:29.670652200Z 	at org.restlet.routing.Router.doHandle(Router.java:422)
2020-01-03T01:14:29.670681700Z 	at org.restlet.routing.Router.handle(Router.java:641)
2020-01-03T01:14:29.670701100Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:14:29.670724300Z 	at org.restlet.engine.application.StatusFilter.doHandle(StatusFilter.java:140)
2020-01-03T01:14:29.670737500Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:14:29.670759500Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:14:29.670775900Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:14:29.670801500Z 	at org.restlet.engine.CompositeHelper.handle(CompositeHelper.java:202)
2020-01-03T01:14:29.670819300Z 	at org.restlet.Component.handle(Component.java:408)
2020-01-03T01:14:29.670846200Z 	at org.restlet.Server.handle(Server.java:507)
2020-01-03T01:14:29.670867300Z 	at org.restlet.engine.connector.ServerHelper.handle(ServerHelper.java:63)
2020-01-03T01:14:29.670894700Z 	at org.restlet.engine.adapter.HttpServerHelper.handle(HttpServerHelper.java:143)
2020-01-03T01:14:29.670917900Z 	at org.restlet.ext.jetty.JettyServerHelper$WrappedServer.handle(JettyServerHelper.java:256)
2020-01-03T01:14:29.670947700Z 	at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:311)
2020-01-03T01:14:29.670965700Z 	at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:257)
2020-01-03T01:14:29.670989700Z 	at org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:544)
2020-01-03T01:14:29.671006700Z 	at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:635)
2020-01-03T01:14:29.671037500Z 	at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:555)
2020-01-03T01:14:29.671065000Z 	at java.lang.Thread.run(Thread.java:748)
2020-01-03T01:14:29.671084900Z Caused by: net.lingala.zip4j.exception.ZipException: zip headers not found. probably not a zip file
2020-01-03T01:14:29.671106000Z 	at net.lingala.zip4j.core.HeaderReader.readEndOfCentralDirectoryRecord(HeaderReader.java:122)
2020-01-03T01:14:29.671128200Z 	at net.lingala.zip4j.core.HeaderReader.readAllHeaders(HeaderReader.java:78)
2020-01-03T01:14:29.671152400Z 	at net.lingala.zip4j.core.ZipFile.readZipInfo(ZipFile.java:425)
2020-01-03T01:14:29.671175000Z 	at net.lingala.zip4j.core.ZipFile.extractAll(ZipFile.java:475)
2020-01-03T01:14:29.671197200Z 	at net.lingala.zip4j.core.ZipFile.extractAll(ZipFile.java:451)
2020-01-03T01:14:29.671219200Z 	at cloudgene.mapred.apps.ApplicationRepository.installFromZipFile(ApplicationRepository.java:350)
2020-01-03T01:14:29.671242900Z 	... 55 more
2020-01-03T01:14:29.672836100Z 20/01/03 01:14:29 ERROR server.Apps: Application not installed.
2020-01-03T01:14:29.672864100Z java.io.IOException: net.lingala.zip4j.exception.ZipException: zip headers not found. probably not a zip file
2020-01-03T01:14:29.672888500Z 	at cloudgene.mapred.apps.ApplicationRepository.installFromZipFile(ApplicationRepository.java:352)
2020-01-03T01:14:29.672908500Z 	at cloudgene.mapred.apps.ApplicationRepository.installFromUrl(ApplicationRepository.java:255)
2020-01-03T01:14:29.672930100Z 	at cloudgene.mapred.apps.ApplicationRepository.install(ApplicationRepository.java:197)
2020-01-03T01:14:29.672951100Z 	at cloudgene.mapred.api.v2.server.Apps.install(Apps.java:62)
2020-01-03T01:14:29.672972600Z 	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
2020-01-03T01:14:29.672994000Z 	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
2020-01-03T01:14:29.673015200Z 	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
2020-01-03T01:14:29.673036500Z 	at java.lang.reflect.Method.invoke(Method.java:498)
2020-01-03T01:14:29.673064400Z 	at org.restlet.resource.ServerResource.doHandle(ServerResource.java:508)
2020-01-03T01:14:29.673092800Z 	at org.restlet.resource.ServerResource.post(ServerResource.java:1341)
2020-01-03T01:14:29.673114000Z 	at org.restlet.resource.ServerResource.doHandle(ServerResource.java:606)
2020-01-03T01:14:29.673131200Z 	at org.restlet.resource.ServerResource.doNegotiatedHandle(ServerResource.java:662)
2020-01-03T01:14:29.673152700Z 	at org.restlet.resource.ServerResource.doConditionalHandle(ServerResource.java:348)
2020-01-03T01:14:29.673181400Z 	at org.restlet.resource.ServerResource.handle(ServerResource.java:1020)
2020-01-03T01:14:29.673208800Z 	at org.restlet.resource.Finder.handle(Finder.java:236)
2020-01-03T01:14:29.673235700Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:14:29.673257200Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:14:29.673275700Z 	at org.restlet.routing.Router.doHandle(Router.java:422)
2020-01-03T01:14:29.673297300Z 	at org.restlet.routing.Router.handle(Router.java:641)
2020-01-03T01:14:29.673314800Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:14:29.673336800Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:14:29.673358300Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:14:29.673385300Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:14:29.673402500Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:14:29.673424300Z 	at org.restlet.engine.application.StatusFilter.doHandle(StatusFilter.java:140)
2020-01-03T01:14:29.673446400Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:14:29.673468200Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:14:29.673490200Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:14:29.673508200Z 	at org.restlet.engine.CompositeHelper.handle(CompositeHelper.java:202)
2020-01-03T01:14:29.673532300Z 	at org.restlet.engine.application.ApplicationHelper.handle(ApplicationHelper.java:77)
2020-01-03T01:14:29.673553700Z 	at org.restlet.Application.handle(Application.java:385)
2020-01-03T01:14:29.673575000Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:14:29.673594100Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:14:29.673615700Z 	at org.restlet.routing.Router.doHandle(Router.java:422)
2020-01-03T01:14:29.673636800Z 	at org.restlet.routing.Router.handle(Router.java:641)
2020-01-03T01:14:29.673657800Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:14:29.673685600Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:14:29.673705900Z 	at org.restlet.routing.Router.doHandle(Router.java:422)
2020-01-03T01:14:29.673727400Z 	at org.restlet.routing.Router.handle(Router.java:641)
2020-01-03T01:14:29.673748700Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:14:29.673768800Z 	at org.restlet.engine.application.StatusFilter.doHandle(StatusFilter.java:140)
2020-01-03T01:14:29.673787000Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:14:29.673808200Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:14:29.673836600Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:14:29.673851500Z 	at org.restlet.engine.CompositeHelper.handle(CompositeHelper.java:202)
2020-01-03T01:14:29.673873400Z 	at org.restlet.Component.handle(Component.java:408)
2020-01-03T01:14:29.673890000Z 	at org.restlet.Server.handle(Server.java:507)
2020-01-03T01:14:29.673907600Z 	at org.restlet.engine.connector.ServerHelper.handle(ServerHelper.java:63)
2020-01-03T01:14:29.674003400Z 	at org.restlet.engine.adapter.HttpServerHelper.handle(HttpServerHelper.java:143)
2020-01-03T01:14:29.674031500Z 	at org.restlet.ext.jetty.JettyServerHelper$WrappedServer.handle(JettyServerHelper.java:256)
2020-01-03T01:14:29.674058700Z 	at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:311)
2020-01-03T01:14:29.674081800Z 	at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:257)
2020-01-03T01:14:29.674115000Z 	at org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:544)
2020-01-03T01:14:29.674139600Z 	at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:635)
2020-01-03T01:14:29.674162400Z 	at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:555)
2020-01-03T01:14:29.674187900Z 	at java.lang.Thread.run(Thread.java:748)
2020-01-03T01:14:29.674215200Z Caused by: net.lingala.zip4j.exception.ZipException: zip headers not found. probably not a zip file
2020-01-03T01:14:29.674237600Z 	at net.lingala.zip4j.core.HeaderReader.readEndOfCentralDirectoryRecord(HeaderReader.java:122)
2020-01-03T01:14:29.674270300Z 	at net.lingala.zip4j.core.HeaderReader.readAllHeaders(HeaderReader.java:78)
2020-01-03T01:14:29.674296500Z 	at net.lingala.zip4j.core.ZipFile.readZipInfo(ZipFile.java:425)
2020-01-03T01:14:29.674318700Z 	at net.lingala.zip4j.core.ZipFile.extractAll(ZipFile.java:475)
2020-01-03T01:14:29.674345200Z 	at net.lingala.zip4j.core.ZipFile.extractAll(ZipFile.java:451)
2020-01-03T01:14:29.674371200Z 	at cloudgene.mapred.apps.ApplicationRepository.installFromZipFile(ApplicationRepository.java:350)
2020-01-03T01:14:29.674396400Z 	... 55 more
2020-01-03T01:14:29.674417900Z 20/01/03 01:14:29 INFO LogService: 2020-01-03	01:14:29	172.17.0.1	-	172.17.0.2	80	POST	/api/v2/server/apps	-	400	115	110	37588	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
2020-01-03T01:17:00.505579400Z java.io.IOException: net.lingala.zip4j.exception.ZipException: net.lingala.zip4j.exception.ZipException: net.lingala.zip4j.exception.ZipException: invalid local header signature for file: bcfs/hapmap_r22.chr10.CEU.hg19.recode.bcf.csi
2020-01-03T01:17:00.505628700Z 	at cloudgene.mapred.apps.ApplicationRepository.installFromZipFile(ApplicationRepository.java:352)
2020-01-03T01:17:00.505668100Z 	at cloudgene.mapred.apps.ApplicationRepository.installFromUrl(ApplicationRepository.java:255)
2020-01-03T01:17:00.505691400Z 	at cloudgene.mapred.apps.ApplicationRepository.install(ApplicationRepository.java:197)
2020-01-03T01:17:00.505721200Z 	at cloudgene.mapred.api.v2.server.Apps.install(Apps.java:62)
2020-01-03T01:17:00.505748400Z 	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
2020-01-03T01:17:00.505765200Z 	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
2020-01-03T01:17:00.505788300Z 	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
2020-01-03T01:17:00.505814200Z 	at java.lang.reflect.Method.invoke(Method.java:498)
2020-01-03T01:17:00.505837100Z 	at org.restlet.resource.ServerResource.doHandle(ServerResource.java:508)
2020-01-03T01:17:00.505858900Z 	at org.restlet.resource.ServerResource.post(ServerResource.java:1341)
2020-01-03T01:17:00.505882900Z 	at org.restlet.resource.ServerResource.doHandle(ServerResource.java:606)
2020-01-03T01:17:00.505901100Z 	at org.restlet.resource.ServerResource.doNegotiatedHandle(ServerResource.java:662)
2020-01-03T01:17:00.505924100Z 	at org.restlet.resource.ServerResource.doConditionalHandle(ServerResource.java:348)
2020-01-03T01:17:00.505941100Z 	at org.restlet.resource.ServerResource.handle(ServerResource.java:1020)
2020-01-03T01:17:00.505974000Z 	at org.restlet.resource.Finder.handle(Finder.java:236)
2020-01-03T01:17:00.505996400Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:17:00.506019700Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:17:00.506037600Z 	at org.restlet.routing.Router.doHandle(Router.java:422)
2020-01-03T01:17:00.506067100Z 	at org.restlet.routing.Router.handle(Router.java:641)
2020-01-03T01:17:00.506090200Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:17:00.506115200Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:17:00.506140400Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:17:00.506169000Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:17:00.506185900Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:17:00.506208200Z 	at org.restlet.engine.application.StatusFilter.doHandle(StatusFilter.java:140)
2020-01-03T01:17:00.506231500Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:17:00.506248000Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:17:00.506268400Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:17:00.506297200Z 	at org.restlet.engine.CompositeHelper.handle(CompositeHelper.java:202)
2020-01-03T01:17:00.506320400Z 	at org.restlet.engine.application.ApplicationHelper.handle(ApplicationHelper.java:77)
2020-01-03T01:17:00.506345400Z 	at org.restlet.Application.handle(Application.java:385)
2020-01-03T01:17:00.506367600Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:17:00.506382400Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:17:00.506400400Z 	at org.restlet.routing.Router.doHandle(Router.java:422)
2020-01-03T01:17:00.506423800Z 	at org.restlet.routing.Router.handle(Router.java:641)
2020-01-03T01:17:00.506441300Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:17:00.506472300Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:17:00.506502400Z 	at org.restlet.routing.Router.doHandle(Router.java:422)
2020-01-03T01:17:00.506524100Z 	at org.restlet.routing.Router.handle(Router.java:641)
2020-01-03T01:17:00.506546900Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:17:00.506563200Z 	at org.restlet.engine.application.StatusFilter.doHandle(StatusFilter.java:140)
2020-01-03T01:17:00.506580600Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:17:00.506599900Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:17:00.506619800Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:17:00.506786500Z 	at org.restlet.engine.CompositeHelper.handle(CompositeHelper.java:202)
2020-01-03T01:17:00.506807100Z 	at org.restlet.Component.handle(Component.java:408)
2020-01-03T01:17:00.506824000Z 	at org.restlet.Server.handle(Server.java:507)
2020-01-03T01:17:00.506854500Z 	at org.restlet.engine.connector.ServerHelper.handle(ServerHelper.java:63)
2020-01-03T01:17:00.506879100Z 	at org.restlet.engine.adapter.HttpServerHelper.handle(HttpServerHelper.java:143)
2020-01-03T01:17:00.506902700Z 	at org.restlet.ext.jetty.JettyServerHelper$WrappedServer.handle(JettyServerHelper.java:256)
2020-01-03T01:17:00.506926300Z 	at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:311)
2020-01-03T01:17:00.506950500Z 	at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:257)
2020-01-03T01:17:00.506979600Z 	at org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:544)
2020-01-03T01:17:00.507003400Z 	at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:635)
2020-01-03T01:17:00.507024100Z 	at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:555)
2020-01-03T01:17:00.507055100Z 	at java.lang.Thread.run(Thread.java:748)
2020-01-03T01:17:00.507487500Z Caused by: net.lingala.zip4j.exception.ZipException: net.lingala.zip4j.exception.ZipException: net.lingala.zip4j.exception.ZipException: invalid local header signature for file: bcfs/hapmap_r22.chr10.CEU.hg19.recode.bcf.csi
2020-01-03T01:17:00.507518400Z 	at net.lingala.zip4j.unzip.Unzip.initExtractFile(Unzip.java:163)
2020-01-03T01:17:00.507564300Z 	at net.lingala.zip4j.unzip.Unzip.initExtractAll(Unzip.java:83)
2020-01-03T01:17:00.507589300Z 	at net.lingala.zip4j.unzip.Unzip.extractAll(Unzip.java:73)
2020-01-03T01:17:00.507612200Z 	at net.lingala.zip4j.core.ZipFile.extractAll(ZipFile.java:488)
2020-01-03T01:17:00.507635000Z 	at net.lingala.zip4j.core.ZipFile.extractAll(ZipFile.java:451)
2020-01-03T01:17:00.507657900Z 	at cloudgene.mapred.apps.ApplicationRepository.installFromZipFile(ApplicationRepository.java:350)
2020-01-03T01:17:00.507680800Z 	... 55 more
2020-01-03T01:17:00.507873100Z Caused by: net.lingala.zip4j.exception.ZipException: net.lingala.zip4j.exception.ZipException: invalid local header signature for file: bcfs/hapmap_r22.chr10.CEU.hg19.recode.bcf.csi
2020-01-03T01:17:00.507899300Z 	at net.lingala.zip4j.unzip.UnzipEngine.unzipFile(UnzipEngine.java:98)
2020-01-03T01:17:00.507923600Z 	at net.lingala.zip4j.unzip.Unzip.initExtractFile(Unzip.java:160)
2020-01-03T01:17:00.507946400Z 	... 60 more
2020-01-03T01:17:00.508490300Z Caused by: net.lingala.zip4j.exception.ZipException: invalid local header signature for file: bcfs/hapmap_r22.chr10.CEU.hg19.recode.bcf.csi
2020-01-03T01:17:00.508516000Z 	at net.lingala.zip4j.core.HeaderReader.readLocalFileHeader(HeaderReader.java:858)
2020-01-03T01:17:00.508534600Z 	at net.lingala.zip4j.unzip.UnzipEngine.checkLocalHeader(UnzipEngine.java:333)
2020-01-03T01:17:00.508557200Z 	at net.lingala.zip4j.unzip.UnzipEngine.getInputStream(UnzipEngine.java:115)
2020-01-03T01:17:00.508580500Z 	at net.lingala.zip4j.unzip.UnzipEngine.unzipFile(UnzipEngine.java:78)
2020-01-03T01:17:00.508611200Z 	... 61 more
2020-01-03T01:17:00.509366700Z 20/01/03 01:17:00 ERROR server.Apps: Application not installed.
2020-01-03T01:17:00.509393700Z java.io.IOException: net.lingala.zip4j.exception.ZipException: net.lingala.zip4j.exception.ZipException: net.lingala.zip4j.exception.ZipException: invalid local header signature for file: bcfs/hapmap_r22.chr10.CEU.hg19.recode.bcf.csi
2020-01-03T01:17:00.509417200Z 	at cloudgene.mapred.apps.ApplicationRepository.installFromZipFile(ApplicationRepository.java:352)
2020-01-03T01:17:00.509435700Z 	at cloudgene.mapred.apps.ApplicationRepository.installFromUrl(ApplicationRepository.java:255)
2020-01-03T01:17:00.509457100Z 	at cloudgene.mapred.apps.ApplicationRepository.install(ApplicationRepository.java:197)
2020-01-03T01:17:00.509473500Z 	at cloudgene.mapred.api.v2.server.Apps.install(Apps.java:62)
2020-01-03T01:17:00.509496100Z 	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
2020-01-03T01:17:00.509514500Z 	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
2020-01-03T01:17:00.509537200Z 	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
2020-01-03T01:17:00.509556900Z 	at java.lang.reflect.Method.invoke(Method.java:498)
2020-01-03T01:17:00.509596400Z 	at org.restlet.resource.ServerResource.doHandle(ServerResource.java:508)
2020-01-03T01:17:00.509614200Z 	at org.restlet.resource.ServerResource.post(ServerResource.java:1341)
2020-01-03T01:17:00.509636000Z 	at org.restlet.resource.ServerResource.doHandle(ServerResource.java:606)
2020-01-03T01:17:00.509658600Z 	at org.restlet.resource.ServerResource.doNegotiatedHandle(ServerResource.java:662)
2020-01-03T01:17:00.509681100Z 	at org.restlet.resource.ServerResource.doConditionalHandle(ServerResource.java:348)
2020-01-03T01:17:00.509703700Z 	at org.restlet.resource.ServerResource.handle(ServerResource.java:1020)
2020-01-03T01:17:00.509745400Z 	at org.restlet.resource.Finder.handle(Finder.java:236)
2020-01-03T01:17:00.509781800Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:17:00.509803600Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:17:00.509822300Z 	at org.restlet.routing.Router.doHandle(Router.java:422)
2020-01-03T01:17:00.509844200Z 	at org.restlet.routing.Router.handle(Router.java:641)
2020-01-03T01:17:00.509865900Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:17:00.509887200Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:17:00.509916100Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:17:00.509934000Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:17:00.509954900Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:17:00.509969400Z 	at org.restlet.engine.application.StatusFilter.doHandle(StatusFilter.java:140)
2020-01-03T01:17:00.509985900Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:17:00.510008000Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:17:00.510029700Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:17:00.510049500Z 	at org.restlet.engine.CompositeHelper.handle(CompositeHelper.java:202)
2020-01-03T01:17:00.510071400Z 	at org.restlet.engine.application.ApplicationHelper.handle(ApplicationHelper.java:77)
2020-01-03T01:17:00.510092700Z 	at org.restlet.Application.handle(Application.java:385)
2020-01-03T01:17:00.510114500Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:17:00.510134200Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:17:00.510156200Z 	at org.restlet.routing.Router.doHandle(Router.java:422)
2020-01-03T01:17:00.510178600Z 	at org.restlet.routing.Router.handle(Router.java:641)
2020-01-03T01:17:00.510201400Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:17:00.510219200Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:17:00.510241200Z 	at org.restlet.routing.Router.doHandle(Router.java:422)
2020-01-03T01:17:00.510267500Z 	at org.restlet.routing.Router.handle(Router.java:641)
2020-01-03T01:17:00.510289400Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:17:00.510311000Z 	at org.restlet.engine.application.StatusFilter.doHandle(StatusFilter.java:140)
2020-01-03T01:17:00.510340100Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:17:00.510361800Z 	at org.restlet.routing.Filter.doHandle(Filter.java:150)
2020-01-03T01:17:00.510383500Z 	at org.restlet.routing.Filter.handle(Filter.java:197)
2020-01-03T01:17:00.510405100Z 	at org.restlet.engine.CompositeHelper.handle(CompositeHelper.java:202)
2020-01-03T01:17:00.510426500Z 	at org.restlet.Component.handle(Component.java:408)
2020-01-03T01:17:00.510447900Z 	at org.restlet.Server.handle(Server.java:507)
2020-01-03T01:17:00.510476200Z 	at org.restlet.engine.connector.ServerHelper.handle(ServerHelper.java:63)
2020-01-03T01:17:00.510491500Z 	at org.restlet.engine.adapter.HttpServerHelper.handle(HttpServerHelper.java:143)
2020-01-03T01:17:00.510513300Z 	at org.restlet.ext.jetty.JettyServerHelper$WrappedServer.handle(JettyServerHelper.java:256)
2020-01-03T01:17:00.510534900Z 	at org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:311)
2020-01-03T01:17:00.510556600Z 	at org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:257)
2020-01-03T01:17:00.510612800Z 	at org.eclipse.jetty.io.AbstractConnection$2.run(AbstractConnection.java:544)
2020-01-03T01:17:00.510633700Z 	at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:635)
2020-01-03T01:17:00.510655900Z 	at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:555)
2020-01-03T01:17:00.510674500Z 	at java.lang.Thread.run(Thread.java:748)
2020-01-03T01:17:00.510702100Z Caused by: net.lingala.zip4j.exception.ZipException: net.lingala.zip4j.exception.ZipException: net.lingala.zip4j.exception.ZipException: invalid local header signature for file: bcfs/hapmap_r22.chr10.CEU.hg19.recode.bcf.csi
2020-01-03T01:17:00.510718400Z 	at net.lingala.zip4j.unzip.Unzip.initExtractFile(Unzip.java:163)
2020-01-03T01:17:00.510735900Z 	at net.lingala.zip4j.unzip.Unzip.initExtractAll(Unzip.java:83)
2020-01-03T01:17:00.510758100Z 	at net.lingala.zip4j.unzip.Unzip.extractAll(Unzip.java:73)
2020-01-03T01:17:00.510787500Z 	at net.lingala.zip4j.core.ZipFile.extractAll(ZipFile.java:488)
2020-01-03T01:17:00.510826800Z 	at net.lingala.zip4j.core.ZipFile.extractAll(ZipFile.java:451)
2020-01-03T01:17:00.510857900Z 	at cloudgene.mapred.apps.ApplicationRepository.installFromZipFile(ApplicationRepository.java:350)
2020-01-03T01:17:00.510882100Z 	... 55 more
2020-01-03T01:17:00.510907900Z Caused by: net.lingala.zip4j.exception.ZipException: net.lingala.zip4j.exception.ZipException: invalid local header signature for file: bcfs/hapmap_r22.chr10.CEU.hg19.recode.bcf.csi
2020-01-03T01:17:00.510935700Z 	at net.lingala.zip4j.unzip.UnzipEngine.unzipFile(UnzipEngine.java:98)
2020-01-03T01:17:00.510968800Z 	at net.lingala.zip4j.unzip.Unzip.initExtractFile(Unzip.java:160)
2020-01-03T01:17:00.510995900Z 	... 60 more
2020-01-03T01:17:00.511028100Z Caused by: net.lingala.zip4j.exception.ZipException: invalid local header signature for file: bcfs/hapmap_r22.chr10.CEU.hg19.recode.bcf.csi
2020-01-03T01:17:00.511054800Z 	at net.lingala.zip4j.core.HeaderReader.readLocalFileHeader(HeaderReader.java:858)
2020-01-03T01:17:00.511079500Z 	at net.lingala.zip4j.unzip.UnzipEngine.checkLocalHeader(UnzipEngine.java:333)
2020-01-03T01:17:00.511217900Z 	at net.lingala.zip4j.unzip.UnzipEngine.getInputStream(UnzipEngine.java:115)
2020-01-03T01:17:00.511246500Z 	at net.lingala.zip4j.unzip.UnzipEngine.unzipFile(UnzipEngine.java:78)
2020-01-03T01:17:00.511270800Z 	... 61 more
2020-01-03T01:17:00.511399100Z 20/01/03 01:17:00 INFO LogService: 2020-01-03	01:17:00	172.17.0.1	-	172.17.0.2	80	POST	/api/v2/server/apps	-	400	239	100	519183	http://localhost:8080	Mozilla/5.0 (Macintosh; Intel Mac OS X 10_14_5) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/79.0.3945.79 Safari/537.36	http://localhost:8080/admin.html
(base) liezls-mbp:~ lie$

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