git branch -f X origin/X
See : http://stackoverflow.com/questions/5667884/how-to-squash-commits-in-git-after-they-have-been-pushed
git branch -f X origin/X
See : http://stackoverflow.com/questions/5667884/how-to-squash-commits-in-git-after-they-have-been-pushed
########################################## | |
# Step 0. setup a list of sample names. | |
# Assume that each of your gzipped | |
# FASTQ files is named as follows: | |
# sample1.1.fq.gz | |
# sample1.2.fq.gz | |
# sample2.1.fq.gz | |
# sample2.2.fq.gz | |
# ... | |
# sampleN.1.fq.gz |
export BATCH1="1094PC0005 1094PC0009 1094PC0012 1094PC0013 " | |
export BATCH2="1094PC0016 1094PC0017 1094PC0018 1094PC0019 \ | |
1094PC0020 1094PC0021 1094PC0022 1094PC0023 1094PC0025 " | |
export BATCH3="1478PC0001B 1478PC0002 1478PC0003 1478PC0004 \ | |
1478PC0005 1478PC0006B 1478PC0007B 1478PC0008B \ | |
1478PC0009B 1478PC0010 1478PC0011 1478PC0012 \ | |
1478PC0013B 1478PC0014B 1478PC0015B 1478PC0016 \ | |
1478PC0017B 1478PC0018 1478PC0019 1478PC0020 \ | |
1478PC0021 1478PC0022B 1478PC0023B 1478PC0024B" | |
export BATCH4="1719PC0001 1719PC0002 1719PC0003 1719PC0004 \ |
sudo apt-get install libtool | |
git clone git://dnaa.git.sourceforge.net/gitroot/dnaa/dnaa dnaa-git | |
cd dnaa-git | |
# bfast required. see above gist | |
cp -r ../bfast-git ./bfast | |
# samtools require. see above gist. | |
cp -r ../samtools-svn/ ./samtools | |
sh autogen.sh && ./configure && make && sudo make install |