arq5x

##########################################
# Step 0. setup a list of sample names.  
# Assume that each of your gzipped
# FASTQ files is named as follows:
# sample1.1.fq.gz
# sample1.2.fq.gz
# sample2.1.fq.gz
# sample2.2.fq.gz
# ...
# sampleN.1.fq.gz

ghedo

/*
 * Simple sound playback using ALSA API and libasound.
 *
 * Compile:
 * $ cc -o play sound_playback.c -lasound
 * 
 * Usage:
 * $ ./play <sample_rate> <channels> <seconds> < <file>
 * 
 * Examples:

arq5x

export BATCH1="1094PC0005 1094PC0009 1094PC0012 1094PC0013 "
export BATCH2="1094PC0016 1094PC0017 1094PC0018 1094PC0019 \
               1094PC0020 1094PC0021 1094PC0022 1094PC0023 1094PC0025 "
export BATCH3="1478PC0001B 1478PC0002 1478PC0003 1478PC0004 \
               1478PC0005 1478PC0006B 1478PC0007B 1478PC0008B \
               1478PC0009B 1478PC0010 1478PC0011 1478PC0012 \
               1478PC0013B 1478PC0014B 1478PC0015B 1478PC0016 \
               1478PC0017B 1478PC0018 1478PC0019 1478PC0020 \
               1478PC0021 1478PC0022B 1478PC0023B 1478PC0024B"
export BATCH4="1719PC0001 1719PC0002 1719PC0003 1719PC0004 \

brentp

sudo apt-get install libtool
git clone git://dnaa.git.sourceforge.net/gitroot/dnaa/dnaa dnaa-git
cd dnaa-git
# bfast required. see above gist
cp -r ../bfast-git ./bfast
# samtools require. see above gist.
cp -r ../samtools-svn/ ./samtools

sh autogen.sh && ./configure && make && sudo make install