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April 11, 2019 19:09
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mcipv4.5 run script error
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[lizadams@dogwood-login2 scripts]$ ./run_mcip.csh intel | |
/proj/ie/proj/CMAS/CMAQ/CMAQv5.3_branch_UNC3/mvapich2_2.3rc1_intel_17.2 | |
Compiler is set to intel | |
/proj/ie/proj/CMAS/CMAQ/CMAQv5.3_branch_UNC3/mvapich2_2.3rc1_intel_17.2/PREP/mcip/scripts | |
Thu Apr 11 15:05:18 EDT 2019 | |
rm: No match. | |
This program uses the EPA-AREAL/MCNC-EnvPgms/BAMS Models-3 | |
I/O Applications Programming Interface, [I/O API] which is | |
built on top of the netCDF I/O library (Copyright 1993, 1996 | |
University Corporation for Atmospheric Research/Unidata | |
Program) and the PVM parallel-programming library (from | |
Oak Ridge National Laboratory). | |
Copyright (C) 1992-2002 MCNC, | |
(C) 1992-2013 Carlie J. Coats, Jr., | |
(C) 2003-2012 Baron Advanced Meteorological Systems, LLC, and | |
(C) 2014-2016 UNC Institute for the Environment. | |
Released under the GNU LGPL License, version 2.1. See URL | |
https://www.gnu.org/licenses/old-licenses/lgpl-2.1.html | |
for conditions of use. | |
ioapi-3.2: $Id: init3.F90 98 2018-04-05 14:35:07Z coats $ | |
Version with PARMS3.EXT/PARAMETER::MXVARS3= 2048 | |
netCDF version 4.1.3 of Jun 19 2018 15:50:22 $ | |
EXECUTION_ID: mcip | |
============================================================================== | |
US EPA COMMUNITY MULTISCALE AIR QUALITY MODEL | |
METEOROLOGY-CHEMISTRY INTERFACE PROCESSOR | |
MCIP V4.5 FROZEN 03/16/2018 | |
============================================================================== | |
- SUBROUTINE SETUP_WRFEM - READING WRF HEADER | |
WRF GRID DIMENSIONS (X,Y,Z) 103 83 35 | |
------------------------------------------------------------------------------ | |
USER OPTIONS AND GRID DEFINITIONS | |
Output start date = 2011-07-01-00:00:00.0000 | |
Output end date = 2011-07-02-00:00:00.0000 | |
Output interval = 60 minutes | |
LPV = 1: Will calculate and output 3D potential vorticity | |
LWOUT = 0: Will not output vertical velocity from the met model | |
LUVCOUT = 1: Will output u- and v-component winds on C grid | |
LSAT = 0: Will not use satellite adjustment of clouds for photolysis | |
LAI was found in the meteorology input file | |
FRACTIONAL LAND USE was found in the meteorology input file | |
FRACTIONAL LAND USE will be read from the WRF file | |
MONIN-OBUKHOV LENGTH was found in the meteorology input file | |
MONIN-OBUKHOV LENGTH will be recomputed by MCIP (Only for WRF P-X LSM) | |
AERODYNAMIC AND STOMATAL RESISTANCE was found in the meteorology input file | |
2-m TEMPERATURE was found in the meteorology input file | |
2-m MIXING RATIO was found in the meteorology input file | |
VEGETATION FRACTION was found in the meteorology input file | |
10-m WIND was found in the meteorology input file | |
CANOPY WETNESS was found in the meteorology input file | |
ROUGHNESS LENGTH was found in the meteorology input file | |
SOIL MOISTURE, TEMPERATURE, AND TYPE was found in the meteorology input file | |
SOIL MOISTURE, TEMPERATURE, AND TYPE will be in the output file | |
TURBULENT KINETIC ENERGY was NOT found in the meteorology input file | |
URBAN CANOPY MODEL (WRF ONLY) was NOT used in the meteorology model | |
3D RESOLVED CLOUD FRACTION was NOT found in the meteorology input file | |
HYBRID VERTICAL COORDINATE (WRF ONLY) was NOT used in the meteorology model | |
Met domain dimensions (col, row, lay): 103 83 35 | |
MCIP X domain dimensions (col, row, lay): 102 82 35 | |
Output domain dimensions (col, row, lay): 100 80 35 | |
Output grid resolution: 12.0000000000000 km | |
Window domain origin on met domain (col,row): 1 , 1 | |
Window domain far corner on met domain (col,row): 103 , 83 | |
Cells and points for diagnostic prints | |
LPRT_COL LPRT_ROW 50 40 | |
LPRT_XCOL LPRT_XROW 51 41 | |
LPRT_METX LPRT_METY 51 41 | |
IOAPI header variables: | |
GDTYP3D 2 | |
GDNAM3D SE52BENCH | |
P_ALP3D 33.000 | |
P_BET3D 45.000 | |
P_GAM3D -97.000 | |
XCENT3D -97.000 | |
YCENT3D 40.000 | |
XORIG3D 792000.000 | |
YORIG3D -1080000.000 | |
XCELL3D 12000.000 | |
YCELL3D 12000.000 | |
VGTYP3D 7 | |
VGTOP3D 5000.000 | |
VGLVS3D 1.00000 0.99750 0.99500 0.99000 0.98500 0.98000 | |
0.97000 0.96000 0.95000 0.94000 0.93000 0.92000 | |
0.91000 0.90000 0.88000 0.86000 0.84000 0.82000 | |
0.80000 0.77000 0.74000 0.70000 0.65000 0.60000 | |
0.55000 0.50000 0.45000 0.40000 0.35000 0.30000 | |
0.25000 0.20000 0.15000 0.10000 0.05000 0.00000 | |
------------------------------------------------------------------------------ | |
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
~~~ Processing meteorology for time = 2011-07-01-00:00:00.0000 | |
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
U -0.5964 -1.0403 -1.4599 -1.6978 -1.8199 | |
-2.0807 -2.2600 -2.3977 -2.4544 -2.4656 | |
-2.4317 -2.4188 -2.3964 -2.3666 -2.2259 | |
-2.2015 -2.2499 -2.2323 -1.8278 -0.8676 | |
1.0808 1.7251 0.3862 1.4014 3.9795 | |
4.9639 4.0927 5.3105 7.8828 7.1929 | |
6.8925 8.3963 10.0014 11.2059 -3.4874 | |
V -1.1953 -1.9070 -2.3910 -2.5187 -2.4803 | |
-2.4053 -2.3986 -2.3874 -2.4024 -2.4354 | |
-2.4502 -2.4705 -2.4900 -2.5159 -2.4002 | |
-2.4326 -2.5392 -2.4911 -2.2160 -2.5166 | |
-4.5179 -4.7055 -6.6039 -8.7604 -10.0605 | |
-8.8545 -7.6360 -6.5225 -5.1344 -8.6715 | |
-7.9447 -7.0248 -4.6970 -6.3167 -7.6872 | |
W -0.0013 -0.0068 -0.0088 -0.0094 -0.0093 | |
-0.0093 -0.0090 -0.0089 -0.0090 -0.0093 | |
-0.0090 -0.0091 -0.0093 -0.0090 -0.0089 | |
-0.0086 -0.0091 -0.0087 -0.0071 -0.0038 | |
-0.0047 0.0020 0.0146 0.0197 0.0084 | |
-0.0096 -0.0158 -0.0003 0.0219 0.0285 | |
0.0181 0.0030 -0.0022 0.0029 0.0054 | |
-0.0011 | |
PH 0.0000 14.6424 29.0047 57.2208 85.1313 | |
112.8778 168.0043 222.7705 277.1376 331.0602 | |
384.4995 437.4410 489.8475 541.6945 643.7048 | |
743.5847 841.2031 936.4425 1029.3514 1164.3414 | |
1293.2196 1450.1709 1647.4191 1869.0129 2107.1233 | |
2377.2019 2688.4321 3040.7261 3434.5886 3844.6377 | |
4247.0693 4712.2925 5303.2905 6377.2554 7210.1094 | |
9052.6641 | |
PHB 765.1553 962.6146 1160.4569 1557.3174 1955.7478 | |
2355.7827 3160.6733 3972.0894 4790.1455 5614.9644 | |
6446.6768 7285.3921 8131.2476 8984.3877 10713.0273 | |
12472.4590 14263.9023 16088.6348 17948.0312 20805.4141 | |
23749.4668 27820.1406 33164.7578 38828.4688 44855.9414 | |
51302.3164 58236.8750 65748.4531 73953.8516 83011.2188 | |
93142.9844 104677.5859 118132.9844 134406.7656 157094.2812 | |
195157.4688 | |
P 1326.0703 1312.6719 1300.0781 1289.3750 1280.6797 | |
1265.7578 1246.5000 1226.9219 1207.9922 1188.6797 | |
1168.3438 1148.8672 1129.0078 1099.9062 1060.5156 | |
1021.5156 982.2031 943.2969 893.4297 836.0000 | |
775.1797 715.8516 658.0469 602.6680 546.9102 | |
491.5781 437.5586 384.9062 332.9883 281.2441 | |
229.7676 178.5605 127.6582 76.9062 25.6348 | |
PB 98966.5547 98731.3516 98378.5313 97908.1094 97437.6953 | |
96732.0625 95791.2188 94850.3750 93909.5312 92968.6953 | |
92027.8516 91087.0156 90146.1641 88734.9062 86853.2266 | |
84971.5391 83089.8516 81208.1719 78856.0625 76033.5469 | |
72740.6016 68506.8047 63802.6016 59098.3984 54394.1836 | |
49689.9766 44985.7695 40281.5625 35577.3516 30873.1465 | |
26168.9355 21464.7305 16760.5195 12056.3125 7352.1045 | |
THETA 304.3011 305.0110 305.4361 305.6014 305.6483 | |
305.6881 305.7391 305.7730 305.7908 305.8033 | |
305.8008 305.7959 305.7897 305.7814 305.8174 | |
305.8354 305.8592 305.9174 306.0104 306.1797 | |
308.4571 311.1703 314.5753 316.9744 320.1039 | |
323.7825 327.3818 330.8230 333.1943 334.8087 | |
338.6066 343.4999 354.4267 377.0505 438.0953 | |
T 304.5553 305.0494 305.1553 304.8987 304.5239 | |
303.9268 303.1236 302.2969 301.4485 300.5883 | |
299.7058 298.8154 297.9168 296.5580 294.7667 | |
292.9295 291.0674 289.2069 286.8524 284.0107 | |
282.4996 280.1269 277.4837 273.5389 269.7590 | |
265.8854 261.2969 255.8285 248.6665 239.9319 | |
231.4373 221.8293 213.2238 206.3851 208.0262 | |
QVAPOR 0.0146 0.0123 0.0108 0.0101 0.0100 | |
0.0099 0.0098 0.0098 0.0098 0.0098 | |
0.0098 0.0098 0.0098 0.0098 0.0098 | |
0.0098 0.0098 0.0098 0.0098 0.0097 | |
0.0046 0.0019 0.0008 0.0009 0.0010 | |
0.0008 0.0004 0.0003 0.0002 0.0002 | |
0.0001 0.0001 0.0000 0.0000 0.0000 | |
QCLOUD 0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
QRAIN 0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
QICE 0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
QSNOW 0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
QGRAUP 0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
MU 1025.3440 Pa | |
MUB 94084.1641 Pa | |
T2 304.1827 K | |
Q2 0.0163 kg/kg | |
U10 -0.4512 m/s | |
V10 -0.9520 m/s | |
PSFC 100402.5469 Pa | |
MAPFAC_M 0.9992 dimensionless | |
MAPFAC_U 0.9991 dimensionless | |
MAPFAC_V 0.9992 dimensionless | |
HGT 77.9975 m | |
RAINC 0.0000 cm | |
RAINNC 0.0000 cm | |
SWDOWN 113.8828 W m^-2 | |
GLW 399.8240 W m^-2 | |
XLAT 33.4891 degrees | |
XLAT_U 33.4980 degrees | |
XLAT_V 33.4358 degrees | |
XLONG -81.9709 degrees | |
XLONG_U -82.0349 degrees | |
XLONG_V -81.9816 degrees | |
LU_INDEX 24 category | |
LANDMASK 1.0000 category | |
HFX -9.0076 W m^-2 | |
LH 70.7717 W m^-2 | |
UST 0.1068 m | |
MOL 30.9906 m | |
QFX 0.0000 kg m-2 s-1 | |
PBLH 85.5292 m | |
RA 95.0254 s m^-1 | |
RS 233.7984 s m^-1 | |
LAI 2.9035 area/area | |
CANWAT 0.0000 kg m^-2 | |
VEGF_PX 0.6907 area/area | |
ISLTYP 3 category | |
SMOIS 1 0.0399 m^3 m^-3 | |
SMOIS 2 0.1896 m^3 m^-3 | |
SMOIS 0.0399 0.1896 | |
TSLB 1 303.5585 K | |
TSLB 2 299.1393 K | |
TSLB 303.5585 299.1393 | |
TSK 303.5585 K | |
ALBEDO 0.1222 fraction | |
LANDUSEF 0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.0000 0.0000 0.0000 | |
0.0000 0.0591 0.0000 0.0000 0.0000 | |
0.0000 0.0000 0.1679 0.2715 0.1164 | |
0.0577 0.0020 0.0818 0.0761 0.0103 | |
0.0000 0.0095 0.0375 0.0000 0.0000 | |
0.0000 0.0197 0.0192 0.0637 0.0074 | |
********************************************************************** | |
*** SUBROUTINE: RDWRFEM | |
*** ERROR RETRIEVING VARIABLE FROM WRF FILE | |
*** VARIABLE = F | |
*** RCODE = NetCDF: Variable not found | |
********************************************************************** | |
*** ERROR ABORT in subroutine RDWRFEM | |
ABNORMAL TERMINATION IN RDWRFEM | |
Date and time 0:00:00 July 1, 2011 (2011182:000000) | |
Error running mcip |
after changing the run_mcip.csh to
set LPV = 0
My next error was:
SEAICE 0.0000 fraction
**********************************************************************
*** SUBROUTINE: RDWRFEM
*** ERROR RETRIEVING VARIABLE FROM WRF FILE
*** VARIABLE = SNOWH
*** RCODE = NetCDF: Variable not found
**********************************************************************
*** ERROR ABORT in subroutine RDWRFEM
ABNORMAL TERMINATION IN RDWRFEM
Date and time 0:00:00 July 1, 2011 (2011182:000000)
Error running mcip
The variables that start with SNOW in the wrf input files are as follows:
grep SNOW subset_wrfout_d01_2011-07-01_00:00:00.header
float QSNOW(Time, bottom_top, south_north, west_east) ;
QSNOW:FieldType = 104 ;
QSNOW:MemoryOrder = "XYZ" ;
QSNOW:description = "Snow mixing ratio" ;
QSNOW:units = "kg kg-1" ;
QSNOW:stagger = "" ;
QSNOW:coordinates = "XLONG XLAT XTIME" ;
float SNOWC(Time, south_north, west_east) ;
SNOWC:FieldType = 104 ;
SNOWC:MemoryOrder = "XY " ;
SNOWC:description = "FLAG INDICATING SNOW COVERAGE (1 FOR SNOW COVER)" ;
SNOWC:units = "" ;
SNOWC:stagger = "" ;
SNOWC:coordinates = "XLONG XLAT XTIME" ;
So, I don't have the SNOWH variable in the input file that comes with the BENCHMARK case in the following tar file: CMAQv5.2_Benchmark_SingleDay_Input_09_12_2017.tar.gz
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It looks like I need to change the setting for LPV in the run script
IF ( lpv > 0 ) THEN
CALL get_var_2d_real_cdf (cdfid, 'F', dum2d, it, rcode)
IF ( rcode == nf90_noerr ) THEN
coriolis(1:nxm,1:nym) = dum2d(:,:)
coriolis(nx,:) = coriolis(nxm,:)
coriolis(:,ny) = coriolis(:,nym)
WRITE (,f6000) 'F ', coriolis(lprt_metx, lprt_mety), 's-1'
ELSE
WRITE (,f9400) TRIM(pname), 'F ', TRIM(nf90_strerror(rcode))