A Computercraft program that I used in the past to manage and refill Thaumcraft jars with Logistics Pipes. It's outdated by now and probably won't work without major adaptations.

aspect_colors.lua

--The MIT License (MIT)

--Copyright (c) 2014-2015 ljfa

--Permission is hereby granted, free of charge, to any person obtaining a copy
--of this software and associated documentation files (the "Software"), to deal
--in the Software without restriction, including without limitation the rights
--to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
--copies of the Software, and to permit persons to whom the Software is
--furnished to do so, subject to the following conditions:

--The above copyright notice and this permission notice shall be included in
--all copies or substantial portions of the Software.

--THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
--IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
--FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
--AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
--LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
--OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
--THE SOFTWARE.

return {
  aer = colors.yellow,
  aqua = colors.blue,
  ignis = colors.orange,
  ordo = colors.white,
  perditio = colors.gray,
  terra = colors.green,

  gelum = colors.lightBlue,
  lux = colors.yellow,
  motus = colors.white,
  potentia = colors.lightBlue,
  saxum = colors.lightGray,
  permutatio = colors.green,
  vacuos = colors.lightGray,
  victus = colors.red,
  bestia = colors.brown,
  fames = colors.red,
  granum = colors.brown,
  iter = colors.red,
  limus = colors.lime,
  metallum = colors.lightGray,
  mortuus = colors.lightGray,
  tempestas = colors.white,
  vitreus = colors.blue,
  venenum = colors.lime,
  volatus = colors.white,
  tenebrae = colors.gray,
  spiritus = colors.white,
  sano = colors.red,
  alienis = colors.purple,
  praecantatio = colors.purple,
  auram = colors.pink,
  vitium = colors.purple,
  herba = colors.green,
  arbor = colors.brown,
  corpus = colors.magenta,
  exanimis = colors.lightGray,
  cognitio = colors.pink,
  sensus = colors.blue,
  humanus = colors.pink,
  messis = colors.yellow,
  perfodio = colors.white,
  instrumentum = colors.blue,
  meto = colors.orange,
  telum = colors.red,
  tutamen = colors.blue,
  lucrum = colors.yellow,
  fabrico = colors.green,
  pannus = colors.white,
  machina = colors.lightGray,
  vinculum = colors.white,
  
  --Magic Bees
  tempus = colors.purple,
  
  --Forbidden Magic
  infernus = colors.red,
  luxuria = colors.pink,
  desidia = colors.lightGray,
  gula = colors.yellow,
  invidia = colors.lime,
  ira = colors.brown,
  superbia = colors.purple,
}

essentia.lua

--The MIT License (MIT)

--Copyright (c) 2014-2015 ljfa

--Permission is hereby granted, free of charge, to any person obtaining a copy
--of this software and associated documentation files (the "Software"), to deal
--in the Software without restriction, including without limitation the rights
--to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
--copies of the Software, and to permit persons to whom the Software is
--furnished to do so, subject to the following conditions:

--The above copyright notice and this permission notice shall be included in
--all copies or substantial portions of the Software.

--THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
--IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
--FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
--AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
--LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
--OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
--THE SOFTWARE.

local totalConsumedFile = "total_consumed"
local manaBeanItemId = 25366
--The text colors for the aspects
local aspectColors = dofile("aspect_colors")
local refreshTime = 30

--All managed aspects. Only aspects for which there is a jar are listed here
local aspects
--Table of tables which hold the peripheral handles for all jars to a given aspect
local jarHandles
--The Logistics Pipes ItemIdentifiers for all available mana beans
local itemIdents = {}
--The amount of essentia in the jars
local jarAmount
--The amount of mana beans available
local stockAmount
--The total consumption of all mana beans
local totalConsumed

--The Logistics Pipe peripheral handle
local lp
--The monitor peripheral handle
local mon

--Windows
local winAspects
local winContr
local winRefill

local colWidth = 19
local lines = 20

--Modes: available, stock, total, statistics, capacity, percentage
local aspectMode = "available"
--States: aspects, refill
local state = "aspects"

local timerRefresh

local refAspect
local refAmount
local refCurrent
local refMaximum
local refCapacity

----------------------------------------------------------------
function wrapLp()
  lp = peripheral.find("LogisticsPipes:Request")
  if not lp then
    error("No logistics request pipe found")
  end
end

----------------------------------------------------------------
function wrapMonitor()
  mon = peripheral.find("monitor")
  if not mon then
    error("No monitor found")
  end
  mon.setBackgroundColor(colors.black)
  mon.setTextColor(colors.white)
  mon.clear()
  mon.setTextScale(1)
end

----------------------------------------------------------------
function wrapJars()
  aspects = {}
  jarHandles = {}
  jarAmount = {}
  
  local per = peripheral.getNames()
  for i = 1, #per do
    local pt = peripheral.getType(per[i])
    if pt == "tilejar" or pt == "tilejarvoid" then
      local jar = peripheral.wrap(per[i])
      local asp = jar.getAspects()[1]
      if not asp then
        error("The jar \""..per[i].."\" is unlabeled and empty!")
      end
      local aspect = string.lower(asp.name)
      local count = asp.quantity
      
      if not jarHandles[aspect] then
        jarHandles[aspect] = {jar}
        jarAmount[aspect] = count
        table.insert(aspects, aspect)
      else
        table.insert(jarHandles[aspect], jar)
        jarAmount[aspect] = jarAmount[aspect] + count
      end
    end
  end
  
  table.sort(aspects)
end

----------------------------------------------------------------
function updateJars()
  print("Updating jar values")
  for aspect, handles in pairs(jarHandles) do
    jarAmount[aspect] = 0
    for _, jar in pairs(handles) do
      local asp = jar.getAspects()[1]
      if not asp then
        error("One of the jars that used to hold "..aspect.." is unlabeled and empty!")
      end
      jarAmount[aspect] = jarAmount[aspect] + asp.quantity
    end
  end
end

----------------------------------------------------------------
function warning(...)
  term.setTextColor(colors.orange)
  print("Warning: ", ...)
  term.setTextColor(colors.white)
end

----------------------------------------------------------------
--Returns the aspect of the mana bean referred to by ident
function getAspectFromIdent(ident)
  local nbt = ident.getTagCompound()
  return nbt.value.Aspects.value[1].value.key.value
end

----------------------------------------------------------------
function updateStock()
  print("Updating stock values")
  stockAmount = {}
  items = lp.getAvailableItems()
  for i = 1, #items do
    local ident = items[i].getValue1()
    if ident.getId() == manaBeanItemId then
      local aspect = getAspectFromIdent(ident)
      local count = items[i].getValue2()
      
      itemIdents[aspect] = ident
      stockAmount[aspect] = count
    end
  end
end

----------------------------------------------------------------
function loadFromFile(file)
  local f = fs.open(file, "r")
  if not f then
    return nil
  end
  local ret = textutils.unserialize(f.readAll())
  f.close()
  return ret
end

----------------------------------------------------------------
function storeToFile(val, file)
  local f = fs.open(file, "w")
  if not f then return false end
  f.write(textutils.serialize(val))
  f.close()
  return true
end

----------------------------------------------------------------
--A simple stable sort algorithm
function insertionSort(tbl, cmp)
  cmp = cmp or function(a, b) return a < b end
  for i = 2, #tbl do
    local el = tbl[i]
    local j = i
    while j > 1 and cmp(el, tbl[j-1]) do
      tbl[j] = tbl[j-1]
      j = j-1
    end
    tbl[j] = el
  end
end

----------------------------------------------------------------
function displayJars(colWidth, lines, mode)
  local winAspects = winAspects
  winAspects.setVisible(false)
  winAspects.clear()

  local x, y = 1, 1
  for i = 1, #aspects do
    winAspects.setTextColor(aspectColors[aspects[i]] or colors.white)
    winAspects.setCursorPos(x, y)
    winAspects.write(firstToUpper(aspects[i]))
    winAspects.setCursorPos(x+13, y)
    
    local ava = jarAmount[aspects[i]]
    local sto = stockAmount[aspects[i]] or 0
    local stat = totalConsumed[aspects[i]] or 0
    local cap = 64 * #jarHandles[aspects[i]]
    
    local dstr = ""
    if mode == "available" then
      dstr = string.format("%4d", ava)
    elseif mode == "stock" then
      dstr = string.format("%4d", sto)
    elseif mode == "total" then
      dstr = string.format("%4d", ava + sto)
    elseif mode == "statistics" then
      dstr = string.format("%4d", stat)
    elseif mode == "capacity" then
      dstr = string.format("%4d", cap)
    elseif mode == "percentage" then
      dstr = string.format("%3d%%", 100*ava/cap)
    end
    winAspects.write(dstr)
    
    if y < lines then
      y = y+1
    else
      y = 1
      x = x + colWidth
    end
  end
  winAspects.setVisible(true)
  winContr.redraw()
end

----------------------------------------------------------------
function doRequest(aspect, amount)
  if amount == 0 then return true end
  local ident = itemIdents[aspect]
  if not ident then
    warning("No item identifier for ", aspect)
    return false
  end
  local res = lp.makeRequest(ident, amount)
  if res ~= "DONE" then
    warning("Request for ", amount, " x ", aspect, " failed: ", res)
    return false
  end
  print("Successfully requested ", amount, " x ", aspect)
  totalConsumed[aspect] = (totalConsumed[aspect] or 0) + amount
  if stockAmount[aspect] then
    stockAmount[aspect] = stockAmount[aspect] - amount
  end
  storeToFile(totalConsumed, totalConsumedFile)
  return true
end

----------------------------------------------------------------
function firstToUpper(str)
  return str:gsub("^%l", string.upper)
end

----------------------------------------------------------------
function drawModeButton(mode)
  if aspectMode == mode then
    winContr.setBackgroundColor(colors.red)
  else
    winContr.setBackgroundColor(colors.blue)
  end
  if mode == "available" then
    winContr.setCursorPos(2,2)
    winContr.write(" Available ")
  elseif mode == "stock" then
    winContr.setCursorPos(2,3)
    winContr.write(" Stocked   ")
  elseif mode == "total" then
    winContr.setCursorPos(2,4)
    winContr.write(" Total     ")
  elseif mode == "statistics" then
    winContr.setCursorPos(14,2)
    winContr.write(" Statistics ")
  elseif mode == "capacity" then
    winContr.setCursorPos(14,3)
    winContr.write(" Capacity   ")
  elseif mode == "percentage" then
    winContr.setCursorPos(14,4)
    winContr.write(" Percentage ")
  end
end

----------------------------------------------------------------
function drawRefreshButton()
  winContr.setCursorPos(27,2)
  winContr.write("           ")
  winContr.setCursorPos(27,3)
  winContr.write("  Refresh  ")
  winContr.setCursorPos(27,4)
  winContr.write("           ")
end

----------------------------------------------------------------
function drawOptionsButton()
  winContr.setCursorPos(39,2)
  winContr.write("           ")
  winContr.setCursorPos(39,3)
  winContr.write("  Options  ")
  winContr.setCursorPos(39,4)
  winContr.write("           ")
end

----------------------------------------------------------------
function changeAspectMode(mode)
  if aspectMode == mode then return end
  local oldMode = aspectMode
  aspectMode = mode
  drawModeButton(oldMode)
  drawModeButton(mode)
  displayJars(colWidth, lines, mode)
end

----------------------------------------------------------------
function changeState(nst)
  if state == nst then return end
  if state == "aspects" then
    winAspects.setVisible(false)
  elseif state == "refill" then
    winRefill.setVisible(false)
  end
  
  if nst == "aspects" then
    displayJars(colWidth, lines, aspectMode)
    timerRefresh = os.startTimer(refreshTime)
  elseif nst == "refill" then
    refCurrent = jarAmount[refAspect]
    refMaximum = refCurrent + (stockAmount[refAspect] or 0)
    refCapacity = 64*#jarHandles[refAspect]
  
    winRefill.setTextColor(aspectColors[refAspect] or colors.white)
    winRefill.setBackgroundColor(colors.black)
    winRefill.setCursorPos(22, 5)
    winRefill.write(firstToUpper(refAspect).."        ")
    winRefill.setTextColor(colors.white)
    winRefill.setCursorPos(14, 7)
    winRefill.write(string.format("%6d", refCurrent))
    winRefill.setCursorPos(14, 8)
    winRefill.write(string.format("%6d", refMaximum))
    winRefill.setCursorPos(14, 9)
    winRefill.write(string.format("%6d", refCapacity))
    winRefill.setVisible(true)
    changeRefAmount(refCurrent)
  end
  state = nst
end

----------------------------------------------------------------
function changeRefAmount(amount)
  refAmount = math.min(math.max(refCurrent, amount), refMaximum, refCapacity)
  winRefill.setBackgroundColor(colors.gray)
  winRefill.setCursorPos(31, 7)
  winRefill.write(string.format(" %3d ", refAmount-refCurrent))
  winRefill.setCursorPos(31, 8)
  winRefill.write(string.format(" %3d ", refAmount))
end

----------------------------------------------------------------
--Main

print("Wrapping request pipe and monitor")
wrapLp()
wrapMonitor()
print("Finding and wrapping all jars")
wrapJars()
print("Searching for mana beans")
updateStock()
print("Loading total consumed file ", totalConsumedFile)
totalConsumed = loadFromFile(totalConsumedFile) or {}

print("Creating Windows")
winAspects = window.create(mon, 1, 1, 60, 26, true)

winContr = window.create(winAspects, 1, 21, 60, 4, false)
drawModeButton("available")
drawModeButton("stock")
drawModeButton("total")
drawModeButton("statistics")
drawModeButton("capacity")
drawModeButton("percentage")

--drawOptionsButton()
drawRefreshButton()
winContr.setVisible(true)

displayJars(colWidth, lines, aspectMode)

winRefill = window.create(mon, 1, 1, 60, 26, false)
winRefill.setCursorPos(4, 5)
winRefill.write("Aspect to refill:")
winRefill.setCursorPos(4, 7)
winRefill.write("Current:")
winRefill.setCursorPos(4, 8)
winRefill.write("Maximum:")
winRefill.setCursorPos(4, 9)
winRefill.write("Capacity:")
winRefill.setCursorPos(23, 7)
winRefill.write(" Plus:  ")
winRefill.setCursorPos(23, 8)
winRefill.write(" Total: ")
winRefill.setBackgroundColor(colors.blue)
winRefill.setCursorPos(4, 11)
winRefill.write("   +1   ")
winRefill.setCursorPos(13, 11)
winRefill.write("   +5   ")
winRefill.setCursorPos(22, 11)
winRefill.write("  +32   ")
winRefill.setCursorPos(4, 13)
winRefill.write("   -1   ")
winRefill.setCursorPos(13, 13)
winRefill.write("   -5   ")
winRefill.setCursorPos(22, 13)
winRefill.write("  -32   ")
winRefill.setCursorPos(31, 11)
winRefill.write("       ")
winRefill.setCursorPos(31, 12)
winRefill.write("  Max  ")
winRefill.setCursorPos(31, 13)
winRefill.write("       ")
winRefill.setCursorPos(7, 15)
winRefill.write("          ")
winRefill.setCursorPos(7, 16)
winRefill.write("    OK    ")
winRefill.setCursorPos(7, 17)
winRefill.write("          ")
winRefill.setCursorPos(25, 15)
winRefill.write("          ")
winRefill.setCursorPos(25, 16)
winRefill.write("  Cancel  ")
winRefill.setCursorPos(25, 17)
winRefill.write("          ")
print("Initiation successful")

local quit = false
local timerFlash
timerRefresh = os.startTimer(refreshTime)
while not quit do
  local event, param1, param2, param3 = os.pullEvent()
  if state == "aspects" then
    if event == "monitor_touch" then
      local x, y = param2, param3
      if y <= lines then
        local asp = y + lines * math.floor(x/colWidth)
        refAspect = aspects[asp]
        if refAspect then changeState("refill") end
      else
        if x >= 2 and x <= 12 then
          if y == 22 then
            changeAspectMode("available")
          elseif y == 23 then
            changeAspectMode("stock")
          elseif y == 24 then
            changeAspectMode("total")
          end
        elseif x >= 14 and x <= 25 then
          if y == 22 then
            changeAspectMode("statistics")
          elseif y == 23 then
            changeAspectMode("capacity")
          elseif y == 24 then
            changeAspectMode("percentage")
          end
        elseif x >= 27 and x <= 37 and y >= 22 and y <= 24 then
          winContr.setBackgroundColor(colors.red)
          drawRefreshButton()
          updateJars()
          updateStock()
          displayJars(colWidth, lines, aspectMode)
          timerRefresh = os.startTimer(refreshTime)
          timerFlash = os.startTimer(0.15)
        elseif x >= 39 and x <= 49 and y >= 22 and y <= 24 then
          quit = true
        end
      end
    elseif event == "timer" then
      if param1 == timerRefresh then
        winContr.setBackgroundColor(colors.red)
        drawRefreshButton()
        updateJars()
        updateStock()
        displayJars(colWidth, lines, aspectMode)
        timerRefresh = os.startTimer(refreshTime)
        timerFlash = os.startTimer(0.15)
      elseif param1 == timerFlash then
        winContr.setBackgroundColor(colors.blue)
        drawRefreshButton()
      end
    end
  elseif state == "refill" then
    if event == "monitor_touch" then
      local x, y = param2, param3
      if y == 11 and x >= 4 and x <= 11 then
        changeRefAmount(refAmount+1)
      elseif y == 13 and x >= 4 and x <= 11 then
        changeRefAmount(refAmount-1)
      elseif y == 11 and x >= 13 and x <= 20 then
        changeRefAmount(refAmount+5)
      elseif y == 13 and x >= 13 and x <= 20 then
        changeRefAmount(refAmount-5)
      elseif y == 11 and x >= 22 and x <= 29 then
        changeRefAmount(refAmount+32)
      elseif y == 13 and x >= 22 and x <= 29 then
        changeRefAmount(refAmount-32)
      elseif y >= 11 and y <= 13 and x >= 31 and x <= 37 then
        changeRefAmount(math.huge)
      elseif y >= 15 and y <= 17 and x >= 7 and x <= 16 then
        doRequest(refAspect, refAmount-refCurrent)
        changeState("aspects")
      elseif y >= 15 and y <= 17 and x >= 25 and x <= 34 then
        changeState("aspects")
      end
    end
  end
end

mon.clear()
print("Program successfully ended")