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| clade: Mammal | |
| genome: Human | |
| assembly: Feb. 2009 (GRCh37/hg19) | |
| group: All Tracks | |
| track: | |
| 1000G Ph1 Accsbl | |
| 1000G Ph1 Vars | |
| 5% Lowest S | |
| AceView Genes | |
| Affy Exon Array | |
| Affy GNF1H | |
| Affy RNA Loc | |
| Affy U133 | |
| Affy U133Plus2 | |
| Affy U95 | |
| All SNPs(135) | |
| All SNPs(137) | |
| All SNPs(138) | |
| Allen Brain | |
| Assembly | |
| BAC End Pairs | |
| BU ORChID | |
| Broad ChromHMM | |
| Broad Histone | |
| Burge RNA-seq | |
| CCDS | |
| CD34 DnaseI | |
| CGAP SAGE | |
| COSMIC | |
| CSHL Long RNA-seq | |
| CSHL Small RNA-seq | |
| Caltech RNA-seq | |
| Cand. Gene Flow | |
| Chromosome Band | |
| Chromosome Band (Ideogram) | |
| ClinVar Variants | |
| Common SNPs(135) | |
| Common SNPs(137) | |
| Common SNPs(138) | |
| Cons 46-Way | |
| Cons Indels MmCf | |
| Conservation | |
| Coriell CNVs | |
| CpG Islands | |
| DGV Struct Var | |
| DNase Clusters | |
| DNase Clusters V1 | |
| Denisova Seq | |
| Denisova Variants | |
| Duke Affy Exon | |
| Duke DNaseI HS | |
| ENCODE Pilot | |
| Ensembl Genes | |
| Evo Cpg | |
| EvoFold | |
| Exoniphy | |
| FISH Clones | |
| FSU Repli-chip | |
| Flagged SNPs(135) | |
| Flagged SNPs(137) | |
| Flagged SNPs(138) | |
| Fosmid End Pairs | |
| GAD View | |
| GC Percent | |
| GENCODE Genes V14 | |
| GENCODE Genes V17 | |
| GENCODE Genes V19 | |
| GENCODE Genes V7 | |
| GERP | |
| GIS ChIA-PET | |
| GIS DNA PET | |
| GIS RNA PET | |
| GIS RNA-seq | |
| GNF Atlas 2 | |
| GRC Incident | |
| GRC Map Contigs | |
| GRC Patch Release | |
| GWAS Catalog | |
| Gap | |
| Gene Bounds | |
| GeneReviews | |
| Geneid Genes | |
| Genome Segments | |
| Genome Variants | |
| Genscan Genes | |
| H-C Coding Diffs | |
| H-Inv | |
| H-Inv 7.0 | |
| HAIB Genotype | |
| HAIB Methyl RRBS | |
| HAIB Methyl450 | |
| HAIB RNA-seq | |
| HAIB TFBS | |
| HGDP Allele Freq | |
| HapMap SNPs | |
| Hg18 Diff | |
| Hg38 Diff | |
| Hi Seq Depth | |
| Human ESTs | |
| Human RNA Editing | |
| Human mRNAs | |
| IKMC Genes Mapped | |
| INSDC | |
| ISCA | |
| Illumina WG-6 | |
| Interrupted Rpts | |
| LRG Regions | |
| LRG Transcripts | |
| LaminB1 (Tig3) | |
| Layered H3K27Ac | |
| Layered H3K4Me1 | |
| Layered H3K4Me3 | |
| MGC Genes | |
| MGI Mouse QTL | |
| Map Contigs | |
| Mappability | |
| Microsatellite | |
| Mod Hum Variants | |
| Modern Derived | |
| Mult. SNPs(135) | |
| Mult. SNPs(137) | |
| Mult. SNPs(138) | |
| N-SCAN | |
| NKI LADs (Tig3) | |
| Neandertal Mito | |
| Neandertal Seq | |
| NumtS Sequence | |
| ORFeome Clones | |
| ORegAnno | |
| Old UCSC Genes | |
| Open Chrom Synth | |
| Other ESTs | |
| Other RefSeq | |
| Other mRNAs | |
| Pfam in UCSC Gene | |
| Placental Chain/Net | |
| Poly(A) | |
| PolyA-Seq | |
| Primate Chain/Net | |
| Publications | |
| RGD Human QTL | |
| RGD Rat QTL | |
| RIKEN CAGE Loc | |
| Recomb Rate | |
| RefSeq Genes | |
| RepeatMasker | |
| Retroposed Genes | |
| S SNPs | |
| SGP Genes | |
| SIB Alt-Splicing | |
| SIB Genes | |
| SNP/CNV Arrays | |
| STS Markers | |
| SUNY RIP GeneST | |
| SUNY RIP Tiling | |
| SUNY RIP-seq | |
| SUNY SwitchGear | |
| SYDH Histone | |
| SYDH RNA-seq | |
| SYDH TFBS | |
| Segmental Dups | |
| Sel Swp Scan (S) | |
| Self Chain | |
| Sestan Brain | |
| Simple Repeats | |
| Spliced ESTs | |
| Stanf Nucleosome | |
| SwitchGear TSS | |
| TFBS Conserved | |
| TS miRNA sites | |
| TransMap ESTs | |
| TransMap RefGene | |
| TransMap UCSC | |
| TransMap mRNA | |
| Transcription | |
| Txn Fac ChIP V4 | |
| Txn Factor ChIP | |
| UCSC Alt Events | |
| UCSC Genes | |
| UCSF Brain Methyl | |
| UChicago TFBS | |
| UMMS Brain Hist | |
| UMass 5C | |
| UNC FAIRE | |
| UNC/BSU ProtGenc | |
| UNC/BSU ProtGeno | |
| UTA TFBS | |
| UW Affy Exon | |
| UW CTCF Binding | |
| UW DNaseI DGF | |
| UW DNaseI HS | |
| UW Histone | |
| UW Repli-seq | |
| UniGene | |
| UniProt Variants | |
| Uniform DNaseI HS | |
| Uniform TFBS | |
| Vega Genes | |
| Vertebrate Chain/Net | |
| Vista Enhancers | |
| Web Sequences | |
| Wiki Track | |
| Yale Pseudo60 | |
| deCODE Recomb | |
| lincRNA RNA-Seq Reads | |
| lincRNA Transcripts | |
| phastBias gBGC | |
| qPCR Primers | |
| sno/miRNA | |
| tRNA Genes |
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| tgpPhase1Accessibility 1000G Ph1 Accsbl | |
| tgpPhase1 1000G Ph1 Vars | |
| ntSssTop5p 5% Lowest S | |
| acembly AceView Genes | |
| affyExonArray Affy Exon Array | |
| affyGnf1h Affy GNF1H | |
| wgEncodeAffyRnaChip Affy RNA Loc | |
| affyU133 Affy U133 | |
| affyU133Plus2 Affy U133Plus2 | |
| affyU95 Affy U95 | |
| snp135 All SNPs(135) | |
| snp137 All SNPs(137) | |
| snp138 All SNPs(138) | |
| allenBrainAli Allen Brain | |
| gold Assembly | |
| bacEndPairs BAC End Pairs | |
| wgEncodeBuOrchid BU ORChID | |
| wgEncodeBroadHmm Broad ChromHMM | |
| wgEncodeBroadHistone Broad Histone | |
| burgeRnaSeqGemMapperAlign Burge RNA-seq | |
| ccdsGene CCDS | |
| eioJcviNAS CD34 DnaseI | |
| cgapSage CGAP SAGE | |
| cosmic COSMIC | |
| wgEncodeCshlLongRnaSeq CSHL Long RNA-seq | |
| wgEncodeCshlShortRnaSeq CSHL Small RNA-seq | |
| wgEncodeCaltechRnaSeq Caltech RNA-seq | |
| ntOoaHaplo Cand. Gene Flow | |
| cytoBand Chromosome Band | |
| cytoBandIdeo Chromosome Band (Ideogram) | |
| clinvar ClinVar Variants | |
| snp135Common Common SNPs(135) | |
| snp137Common Common SNPs(137) | |
| snp138Common Common SNPs(138) | |
| cons46way Cons 46-Way | |
| consIndelsHgMmCanFam Cons Indels MmCf | |
| cons100way Conservation | |
| coriellDelDup Coriell CNVs | |
| cpgIslandExt CpG Islands | |
| dgvPlus DGV Struct Var | |
| wgEncodeRegDnaseClusteredV2 DNase Clusters | |
| wgEncodeRegDnaseClustered DNase Clusters V1 | |
| dhcBamDenisova Denisova Seq | |
| dhcVcfDenisovaPinky Denisova Variants | |
| wgEncodeDukeAffyExon Duke Affy Exon | |
| wgEncodeOpenChromDnase Duke DNaseI HS | |
| encodeRegions ENCODE Pilot | |
| ensGene Ensembl Genes | |
| evoCpg Evo Cpg | |
| evofold EvoFold | |
| exoniphy Exoniphy | |
| fishClones FISH Clones | |
| wgEncodeFsuRepliChip FSU Repli-chip | |
| snp135Flagged Flagged SNPs(135) | |
| snp137Flagged Flagged SNPs(137) | |
| snp138Flagged Flagged SNPs(138) | |
| fosEndPairs Fosmid End Pairs | |
| gad GAD View | |
| gc5Base GC Percent | |
| wgEncodeGencodeV14 GENCODE Genes V14 | |
| wgEncodeGencodeV17 GENCODE Genes V17 | |
| wgEncodeGencodeV19 GENCODE Genes V19 | |
| wgEncodeGencodeV7 GENCODE Genes V7 | |
| allHg19RS_BW GERP | |
| wgEncodeGisChiaPet GIS ChIA-PET | |
| wgEncodeGisDnaPet GIS DNA PET | |
| wgEncodeGisRnaPet GIS RNA PET | |
| wgEncodeGisRnaSeq GIS RNA-seq | |
| gnfAtlas2 GNF Atlas 2 | |
| grcIncidentDb GRC Incident | |
| ctgPos2 GRC Map Contigs | |
| altSeqComposite10 GRC Patch Release | |
| gwasCatalog GWAS Catalog | |
| gap Gap | |
| rnaCluster Gene Bounds | |
| geneReviews GeneReviews | |
| geneid Geneid Genes | |
| wgEncodeAwgSegmentation Genome Segments | |
| pgSnp Genome Variants | |
| genscan Genscan Genes | |
| ntHumChimpCodingDiff H-C Coding Diffs | |
| HInvGeneMrna H-Inv | |
| hinv70Composite H-Inv 7.0 | |
| wgEncodeHaibGenotype HAIB Genotype | |
| wgEncodeHaibMethylRrbs HAIB Methyl RRBS | |
| wgEncodeHaibMethyl450 HAIB Methyl450 | |
| wgEncodeHaibRnaSeq HAIB RNA-seq | |
| wgEncodeHaibTfbs HAIB TFBS | |
| hgdpGeo HGDP Allele Freq | |
| hapmapSnps HapMap SNPs | |
| hg19ContigDiff Hg18 Diff | |
| hg38ContigDiff Hg38 Diff | |
| hiSeqDepth Hi Seq Depth | |
| est Human ESTs | |
| darned Human RNA Editing | |
| mrna Human mRNAs | |
| hgIkmc IKMC Genes Mapped | |
| ucscToINSDC INSDC | |
| iscaComposite ISCA | |
| illuminaProbes Illumina WG-6 | |
| nestedRepeats Interrupted Rpts | |
| lrg LRG Regions | |
| lrgTranscriptAli LRG Transcripts | |
| laminB1 LaminB1 (Tig3) | |
| wgEncodeRegMarkH3k27ac Layered H3K27Ac | |
| wgEncodeRegMarkH3k4me1 Layered H3K4Me1 | |
| wgEncodeRegMarkH3k4me3 Layered H3K4Me3 | |
| mgcFullMrna MGC Genes | |
| jaxQtlMapped MGI Mouse QTL | |
| ctgPos Map Contigs | |
| wgEncodeMapability Mappability | |
| microsat Microsatellite | |
| dhcVcfModern Mod Hum Variants | |
| dhcHumDerDenAnc Modern Derived | |
| snp135Mult Mult. SNPs(135) | |
| snp137Mult Mult. SNPs(137) | |
| snp138Mult Mult. SNPs(138) | |
| nscanGene N-SCAN | |
| laminB1Lads NKI LADs (Tig3) | |
| ntMito Neandertal Mito | |
| ntSeqReads Neandertal Seq | |
| numtSeq NumtS Sequence | |
| orfeomeMrna ORFeome Clones | |
| oreganno ORegAnno | |
| knownGeneOld6 Old UCSC Genes | |
| wgEncodeOpenChromSynth Open Chrom Synth | |
| xenoEst Other ESTs | |
| xenoRefGene Other RefSeq | |
| xenoMrna Other mRNAs | |
| ucscGenePfam Pfam in UCSC Gene | |
| placentalChainNet Placental Chain/Net | |
| polyA Poly(A) | |
| polyASeqSites PolyA-Seq | |
| primateChainNet Primate Chain/Net | |
| pubs Publications | |
| rgdQtl RGD Human QTL | |
| rgdRatQtl RGD Rat QTL | |
| wgEncodeRikenCage RIKEN CAGE Loc | |
| recombRate Recomb Rate | |
| refGene RefSeq Genes | |
| rmsk RepeatMasker | |
| ucscRetroAli5 Retroposed Genes | |
| ntSssSnps S SNPs | |
| sgpGene SGP Genes | |
| sibTxGraph SIB Alt-Splicing | |
| sibGene SIB Genes | |
| genotypeArrays SNP/CNV Arrays | |
| stsMap STS Markers | |
| wgEncodeSunyAlbanyGeneSt SUNY RIP GeneST | |
| wgEncodeSunyAlbanyTiling SUNY RIP Tiling | |
| wgEncodeSunyRipSeq SUNY RIP-seq | |
| wgEncodeSunySwitchgear SUNY SwitchGear | |
| wgEncodeSydhHistone SYDH Histone | |
| wgEncodeSydhRnaSeq SYDH RNA-seq | |
| wgEncodeSydhTfbs SYDH TFBS | |
| genomicSuperDups Segmental Dups | |
| ntSssZScorePMVar Sel Swp Scan (S) | |
| chainSelf Self Chain | |
| sestanBrainAtlas Sestan Brain | |
| simpleRepeat Simple Repeats | |
| intronEst Spliced ESTs | |
| wgEncodeSydhNsome Stanf Nucleosome | |
| switchDbTss SwitchGear TSS | |
| tfbsConsSites TFBS Conserved | |
| targetScanS TS miRNA sites | |
| transMapAlnSplicedEst TransMap ESTs | |
| transMapAlnRefSeq TransMap RefGene | |
| transMapAlnUcscGenes TransMap UCSC | |
| transMapAlnMRna TransMap mRNA | |
| wgEncodeRegTxn Transcription | |
| wgEncodeRegTfbsClusteredV3 Txn Fac ChIP V4 | |
| wgEncodeRegTfbsClusteredV2 Txn Factor ChIP | |
| knownAlt UCSC Alt Events | |
| knownGene UCSC Genes | |
| ucsfBrainMethyl UCSF Brain Methyl | |
| wgEncodeUchicagoTfbs UChicago TFBS | |
| uMassBrainHistone UMMS Brain Hist | |
| wgEncodeUmassDekker5C UMass 5C | |
| wgEncodeOpenChromFaire UNC FAIRE | |
| wgEncodeUncBsuProtGenc UNC/BSU ProtGenc | |
| wgEncodeUncBsuProt UNC/BSU ProtGeno | |
| wgEncodeOpenChromChip UTA TFBS | |
| wgEncodeUwAffyExonArray UW Affy Exon | |
| wgEncodeUwTfbs UW CTCF Binding | |
| wgEncodeUwDgf UW DNaseI DGF | |
| wgEncodeUwDnase UW DNaseI HS | |
| wgEncodeUwHistone UW Histone | |
| wgEncodeUwRepliSeq UW Repli-seq | |
| uniGene_3 UniGene | |
| spMut UniProt Variants | |
| wgEncodeAwgDnaseUniform Uniform DNaseI HS | |
| wgEncodeAwgTfbsUniform Uniform TFBS | |
| vegaGeneComposite Vega Genes | |
| vertebrateChainNet Vertebrate Chain/Net | |
| vistaEnhancers Vista Enhancers | |
| pubsBingBlat Web Sequences | |
| wikiTrack Wiki Track | |
| pseudoYale60 Yale Pseudo60 | |
| decodeRmap deCODE Recomb | |
| lincRNAsAllCellTypeTopView lincRNA RNA-Seq Reads | |
| lincRNAsTranscripts lincRNA Transcripts | |
| phastBias phastBias gBGC | |
| qPcrPrimers qPCR Primers | |
| wgRna sno/miRNA | |
| tRNAs tRNA Genes |
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Posted to document inconsistency of current UCSC Table browser with (screenshots of) previous versions which had an option for
Variation and RepeatsSecond file contains a list of shortnames with description. Shortname for Variation and Repeats was
varRepwhich is no longer available.