Skip to content

Instantly share code, notes, and snippets.

@lmmx
Created April 21, 2014 20:24
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save lmmx/11155368 to your computer and use it in GitHub Desktop.
Save lmmx/11155368 to your computer and use it in GitHub Desktop.
We can make this file beautiful and searchable if this error is corrected: It looks like row 2 should actually have 2 columns, instead of 1. in line 1.
tgpPhase1Accessibility 1000G Ph1 Accsbl
tgpPhase1 1000G Ph1 Vars
ntSssTop5p 5% Lowest S
acembly AceView Genes
affyExonArray Affy Exon Array
affyGnf1h Affy GNF1H
wgEncodeAffyRnaChip Affy RNA Loc
affyU133 Affy U133
affyU133Plus2 Affy U133Plus2
affyU95 Affy U95
snp135 All SNPs(135)
snp137 All SNPs(137)
snp138 All SNPs(138)
allenBrainAli Allen Brain
gold Assembly
bacEndPairs BAC End Pairs
wgEncodeBuOrchid BU ORChID
wgEncodeBroadHmm Broad ChromHMM
wgEncodeBroadHistone Broad Histone
burgeRnaSeqGemMapperAlign Burge RNA-seq
ccdsGene CCDS
eioJcviNAS CD34 DnaseI
cgapSage CGAP SAGE
cosmic COSMIC
wgEncodeCshlLongRnaSeq CSHL Long RNA-seq
wgEncodeCshlShortRnaSeq CSHL Small RNA-seq
wgEncodeCaltechRnaSeq Caltech RNA-seq
ntOoaHaplo Cand. Gene Flow
cytoBand Chromosome Band
cytoBandIdeo Chromosome Band (Ideogram)
clinvar ClinVar Variants
snp135Common Common SNPs(135)
snp137Common Common SNPs(137)
snp138Common Common SNPs(138)
cons46way Cons 46-Way
consIndelsHgMmCanFam Cons Indels MmCf
cons100way Conservation
coriellDelDup Coriell CNVs
cpgIslandExt CpG Islands
dgvPlus DGV Struct Var
wgEncodeRegDnaseClusteredV2 DNase Clusters
wgEncodeRegDnaseClustered DNase Clusters V1
dhcBamDenisova Denisova Seq
dhcVcfDenisovaPinky Denisova Variants
wgEncodeDukeAffyExon Duke Affy Exon
wgEncodeOpenChromDnase Duke DNaseI HS
encodeRegions ENCODE Pilot
ensGene Ensembl Genes
evoCpg Evo Cpg
evofold EvoFold
exoniphy Exoniphy
fishClones FISH Clones
wgEncodeFsuRepliChip FSU Repli-chip
snp135Flagged Flagged SNPs(135)
snp137Flagged Flagged SNPs(137)
snp138Flagged Flagged SNPs(138)
fosEndPairs Fosmid End Pairs
gad GAD View
gc5Base GC Percent
wgEncodeGencodeV14 GENCODE Genes V14
wgEncodeGencodeV17 GENCODE Genes V17
wgEncodeGencodeV19 GENCODE Genes V19
wgEncodeGencodeV7 GENCODE Genes V7
allHg19RS_BW GERP
wgEncodeGisChiaPet GIS ChIA-PET
wgEncodeGisDnaPet GIS DNA PET
wgEncodeGisRnaPet GIS RNA PET
wgEncodeGisRnaSeq GIS RNA-seq
gnfAtlas2 GNF Atlas 2
grcIncidentDb GRC Incident
ctgPos2 GRC Map Contigs
altSeqComposite10 GRC Patch Release
gwasCatalog GWAS Catalog
gap Gap
rnaCluster Gene Bounds
geneReviews GeneReviews
geneid Geneid Genes
wgEncodeAwgSegmentation Genome Segments
pgSnp Genome Variants
genscan Genscan Genes
ntHumChimpCodingDiff H-C Coding Diffs
HInvGeneMrna H-Inv
hinv70Composite H-Inv 7.0
wgEncodeHaibGenotype HAIB Genotype
wgEncodeHaibMethylRrbs HAIB Methyl RRBS
wgEncodeHaibMethyl450 HAIB Methyl450
wgEncodeHaibRnaSeq HAIB RNA-seq
wgEncodeHaibTfbs HAIB TFBS
hgdpGeo HGDP Allele Freq
hapmapSnps HapMap SNPs
hg19ContigDiff Hg18 Diff
hg38ContigDiff Hg38 Diff
hiSeqDepth Hi Seq Depth
est Human ESTs
darned Human RNA Editing
mrna Human mRNAs
hgIkmc IKMC Genes Mapped
ucscToINSDC INSDC
iscaComposite ISCA
illuminaProbes Illumina WG-6
nestedRepeats Interrupted Rpts
lrg LRG Regions
lrgTranscriptAli LRG Transcripts
laminB1 LaminB1 (Tig3)
wgEncodeRegMarkH3k27ac Layered H3K27Ac
wgEncodeRegMarkH3k4me1 Layered H3K4Me1
wgEncodeRegMarkH3k4me3 Layered H3K4Me3
mgcFullMrna MGC Genes
jaxQtlMapped MGI Mouse QTL
ctgPos Map Contigs
wgEncodeMapability Mappability
microsat Microsatellite
dhcVcfModern Mod Hum Variants
dhcHumDerDenAnc Modern Derived
snp135Mult Mult. SNPs(135)
snp137Mult Mult. SNPs(137)
snp138Mult Mult. SNPs(138)
nscanGene N-SCAN
laminB1Lads NKI LADs (Tig3)
ntMito Neandertal Mito
ntSeqReads Neandertal Seq
numtSeq NumtS Sequence
orfeomeMrna ORFeome Clones
oreganno ORegAnno
knownGeneOld6 Old UCSC Genes
wgEncodeOpenChromSynth Open Chrom Synth
xenoEst Other ESTs
xenoRefGene Other RefSeq
xenoMrna Other mRNAs
ucscGenePfam Pfam in UCSC Gene
placentalChainNet Placental Chain/Net
polyA Poly(A)
polyASeqSites PolyA-Seq
primateChainNet Primate Chain/Net
pubs Publications
rgdQtl RGD Human QTL
rgdRatQtl RGD Rat QTL
wgEncodeRikenCage RIKEN CAGE Loc
recombRate Recomb Rate
refGene RefSeq Genes
rmsk RepeatMasker
ucscRetroAli5 Retroposed Genes
ntSssSnps S SNPs
sgpGene SGP Genes
sibTxGraph SIB Alt-Splicing
sibGene SIB Genes
genotypeArrays SNP/CNV Arrays
stsMap STS Markers
wgEncodeSunyAlbanyGeneSt SUNY RIP GeneST
wgEncodeSunyAlbanyTiling SUNY RIP Tiling
wgEncodeSunyRipSeq SUNY RIP-seq
wgEncodeSunySwitchgear SUNY SwitchGear
wgEncodeSydhHistone SYDH Histone
wgEncodeSydhRnaSeq SYDH RNA-seq
wgEncodeSydhTfbs SYDH TFBS
genomicSuperDups Segmental Dups
ntSssZScorePMVar Sel Swp Scan (S)
chainSelf Self Chain
sestanBrainAtlas Sestan Brain
simpleRepeat Simple Repeats
intronEst Spliced ESTs
wgEncodeSydhNsome Stanf Nucleosome
switchDbTss SwitchGear TSS
tfbsConsSites TFBS Conserved
targetScanS TS miRNA sites
transMapAlnSplicedEst TransMap ESTs
transMapAlnRefSeq TransMap RefGene
transMapAlnUcscGenes TransMap UCSC
transMapAlnMRna TransMap mRNA
wgEncodeRegTxn Transcription
wgEncodeRegTfbsClusteredV3 Txn Fac ChIP V4
wgEncodeRegTfbsClusteredV2 Txn Factor ChIP
knownAlt UCSC Alt Events
knownGene UCSC Genes
ucsfBrainMethyl UCSF Brain Methyl
wgEncodeUchicagoTfbs UChicago TFBS
uMassBrainHistone UMMS Brain Hist
wgEncodeUmassDekker5C UMass 5C
wgEncodeOpenChromFaire UNC FAIRE
wgEncodeUncBsuProtGenc UNC/BSU ProtGenc
wgEncodeUncBsuProt UNC/BSU ProtGeno
wgEncodeOpenChromChip UTA TFBS
wgEncodeUwAffyExonArray UW Affy Exon
wgEncodeUwTfbs UW CTCF Binding
wgEncodeUwDgf UW DNaseI DGF
wgEncodeUwDnase UW DNaseI HS
wgEncodeUwHistone UW Histone
wgEncodeUwRepliSeq UW Repli-seq
uniGene_3 UniGene
spMut UniProt Variants
wgEncodeAwgDnaseUniform Uniform DNaseI HS
wgEncodeAwgTfbsUniform Uniform TFBS
vegaGeneComposite Vega Genes
vertebrateChainNet Vertebrate Chain/Net
vistaEnhancers Vista Enhancers
pubsBingBlat Web Sequences
wikiTrack Wiki Track
pseudoYale60 Yale Pseudo60
decodeRmap deCODE Recomb
lincRNAsAllCellTypeTopView lincRNA RNA-Seq Reads
lincRNAsTranscripts lincRNA Transcripts
phastBias phastBias gBGC
qPcrPrimers qPCR Primers
wgRna sno/miRNA
tRNAs tRNA Genes
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment