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#!/bin/bash | |
#Heith Seewald 2012 | |
#Feel free to extend/modify to meet your needs. | |
#Maya on Ubuntu v.1 | |
#This is the base installer... I’ll add more features in later versions. | |
#if you have any issues, feel free email me at heiths@gmail.com | |
#### Lets run a few checks to make sure things work as expected. | |
#Make sure we’re running with root permissions. | |
if [ `whoami` != root ]; then |
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example.md: example.Rmd | |
./knit | |
example.ipynb: example.md | |
notedown example.md | sed 's/%%r/%%R/' > example.ipynb |
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use strict; | |
use warnings; | |
my $n_missed_cleavages = 0; | |
my @proteins = qw( | |
DAAAAATTLTTTAMTTTTTTCKMMFRPPPPPGGGGGGGGGGGG | |
ALTAMCMNVWEITYHKGSDVNRRASFAQPPPQPPPPLLAIKPASDASD | |
DAAAAATTLTTTAMTTTTTTCK | |
); |
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Cancer_type | Lifetime_cancer_incidence | Total_cells_tissue | Total_Stem_Cells | Stem_cell_divisions_per_year | Stem_cell_divisions_per_lifetime | LSCD | |
---|---|---|---|---|---|---|---|
ALL | 0.0041 | 3000000000000 | 135000000 | 12 | 960 | 129900000000 | |
BCC | 0.3 | 180000000000 | 5820000000 | 7.6 | 608 | 3550000000000 | |
CLL | 0.0052 | 3000000000000 | 135000000 | 12 | 960 | 129900000000 | |
Colorectal | 0.048 | 30000000000 | 200000000 | 73 | 5840 | 1168000000000 | |
Colorectal_FAP | 1 | 30000000000 | 200000000 | 73 | 5840 | 1168000000000 | |
Colorectal_Lynch | 0.5 | 30000000000 | 200000000 | 73 | 5840 | 1168000000000 | |
Duodenum_adenocarcinoma | 0.0003 | 680000000 | 4000000 | 24 | 1947 | 7796000000 | |
Duodenum_adenocarcinoma_with_FAP | 0.035 | 680000000 | 4000000 | 24 | 1947 | 7796000000 | |
Esophageal_squamous_cell_carcinoma | 0.001938 | 3240000000 | 846000 | 17.4 | 1390 | 1203000000 |
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# original XML at http://www.w3.org/Math/characters/unicode.xml | |
# XSL for conversion: https://gist.github.com/798546 | |
unicode_to_latex = { | |
u"\u0020": "\\space ", | |
u"\u0023": "\\#", | |
u"\u0024": "\\textdollar ", | |
u"\u0025": "\\%", | |
u"\u0026": "\\&", |