lmmx

#!/bin/bash
#Heith Seewald 2012
#Feel free to extend/modify to meet your needs.
#Maya on Ubuntu v.1
#This is the base installer... I’ll add more features in later versions.
#if you have any issues, feel free email me at heiths@gmail.com
 
#### Lets run a few checks to make sure things work as expected.
#Make sure we’re running with root permissions.
if [ `whoami` != root ]; then

lmmx

example.md: example.Rmd
	./knit

example.ipynb: example.md
	notedown example.md | sed 's/%%r/%%R/' > example.ipynb

lmmx

use strict;
use warnings;

my $n_missed_cleavages = 0;
my @proteins = qw(
    DAAAAATTLTTTAMTTTTTTCKMMFRPPPPPGGGGGGGGGGGG
    ALTAMCMNVWEITYHKGSDVNRRASFAQPPPQPPPPLLAIKPASDASD
    DAAAAATTLTTTAMTTTTTTCK
    );

lmmx

lmmx

# original XML at http://www.w3.org/Math/characters/unicode.xml
# XSL for conversion: https://gist.github.com/798546


unicode_to_latex = {
    u"\u0020": "\\space ",
    u"\u0023": "\\#",
    u"\u0024": "\\textdollar ",
    u"\u0025": "\\%",
    u"\u0026": "\\&",