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lpantano/cmd

Created October 19, 2018 19:23
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reproduce UMI couting
Raw
cmd
seqcluster collapse -f example.fastq -o test
Raw
example.fastq
GGATACCCGCTGAACTTAAGCA
+
BBBBBBFFFFFB<FFFF<<FFF
@D00780:267:CCGFFANXX:1:1102:1381:1969 1:N:0:CAGATC:UMI_TTAATCCAATCA
GTATCCGTCGTGG
+
<BBBBFFFFFFFF
@D00780:267:CCGFFANXX:1:1102:1550:1986 1:N:0:CAGATC:UMI_GACGTTAGAACT
AATCGTCCGTGCGGCTTAACAT
+
BBBBBFFFFFFFFFFFFFFFFF
@D00780:267:CCGFFANXX:1:1102:1504:1997 1:N:0:CAGATC:UMI_TGAAGTACTCTA
AATCGTCCGTGCGGCTTAACAT
+
BBBBBFFFFFFFFFFFFFFFFF
@D00780:267:CCGFFANXX:1:1102:2187:1981 1:N:0:CAGATC:UMI_TCTATATTCGAA
AATCGTCCGTGCGGCTTAACAT
+
BBBBBFFFFFFFFFFFFFFFFF
@D00780:267:CCGFFANXX:1:1102:2472:1974 1:N:0:CAGATC:UMI_TACGACGTTCTC
TAGCAGCACGTAAATATTGGCG
+
BBBBBFFFFFFFFFFFFFFFFF
@D00780:267:CCGFFANXX:1:1102:2568:1972 1:N:0:CAGATC:UMI_ACCAATTGTGCT
AAAACTGAAGAGTTTGATCCTGG
+
BBBBBFFFFF/FFFF<FFFFFFF
@D00780:267:CCGFFANXX:1:1102:2722:1977 1:N:0:CAGATC:UMI_GGGTTACACTTT
GACACGGGGAGGC
+
BBBBBFFFFFFFF
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