Skip to content

Instantly share code, notes, and snippets.

@lpantano

lpantano/run_test.slurm

Last active May 23, 2019 14:58
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save lpantano/fb4986dacd57c8cbb0c58db0d2d05ad0 to your computer and use it in GitHub Desktop.
Save lpantano/fb4986dacd57c8cbb0c58db0d2d05ad0 to your computer and use it in GitHub Desktop.
Download ZIP
example of slurm script for pilmbc103
Raw
run_test.slurm
#!/bin/bash
#SBATCH -N 1
#SBATCH -c 1
#SBATCH --mem=200
#SBATCH -J "init"
#SBATCH -e run.e
#SBATCH -o run.o
## SBATCH --mail-type=END,FAIL # this line is commented
## SBATCH --mail-user=tobias.jakobi@med.uni-heidelberg.de # this line is commented
sleep 60 # wait 60 seconds
md5sum work_lpantano/work/sample.fastq.gz
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment