On Brain, install the batchtools package on some version of R. In this case we'll use 4.4.0.
$ module load R-4.4.0_GCC-10.3.0
$ R
Logan Piepmeier lpiep
lpiep
/ vscode_at_deohs.md
Last active
June 13, 2024 17:47
I've tried to address the specifics of setting up Visual Studio Code (VSCode) for the specific way I use it at DEOHS, but of course the more complete documentation of its features are available at the Visual Studio Code website.
lpiep
/ brain_batchtools.md
Last active
February 9, 2023 20:59
Notes on Batchtools on the DEOHS Cluster
https://github.com/kaufman-lab/SOL_modeling/blob/main/brain_guide.md
What we are doing today: The goal is to get you running RStudio on the cluster with the least background possible!
- Reserve resources on the Brain Cluster
- Transfer data & code to and from the Brain Cluster
lpiep
/ deprecated_county_fips.csv
Last active
July 8, 2021 17:15
Counties from1990 - 2019 Census Gazetteer that do not appear in 2020
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| state | state_code | state_name | county_code | county | |
|---|---|---|---|---|---|
| AK | 02 | Alaska | 261 | Valdez-Cordova Census Area | |
| AK | 02 | Alaska | 270 | Wade Hampton Census Area | |
| SD | 46 | South Dakota | 113 | Shannon County | |
| VA | 51 | Virginia | 515 | Bedford city | |
| AK | 02 | Alaska | 201 | Prince of Wales-Outer Ketchikan Census Area | |
| AK | 02 | Alaska | 232 | Skagway-Hoonah-Angoon Census Area | |
| AK | 02 | Alaska | 280 | Wrangell-Petersburg Census Area | |
| VA | 51 | Virginia | 560 | Clifton Forge city | |
| AK | 02 | Alaska | 231 | Skagway-Yakutat-Angoon Census Area |
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| state_fips | county_fips | state_abbr | county_name | nad83_spz_code | nad83_spz_type | nad83_spz_desc | |
|---|---|---|---|---|---|---|---|
| 01 | 001 | AL | AUTAUGA CO. | 0102 | TRANSVERSE MERCATOR | WESTERN ZONE | |
| 01 | 003 | AL | BALDWIN CO. | 0102 | TRANSVERSE MERCATOR | WESTERN ZONE | |
| 01 | 005 | AL | BARBOUR CO. | 0101 | TRANSVERSE MERCATOR | EASTERN ZONE | |
| 01 | 007 | AL | BIBB CO. | 0102 | TRANSVERSE MERCATOR | WESTERN ZONE | |
| 01 | 009 | AL | BLOUNT CO. | 0102 | TRANSVERSE MERCATOR | WESTERN ZONE | |
| 01 | 011 | AL | BULLOCK CO. | 0101 | TRANSVERSE MERCATOR | EASTERN ZONE | |
| 01 | 013 | AL | BUTLER CO. | 0102 | TRANSVERSE MERCATOR | WESTERN ZONE | |
| 01 | 015 | AL | CALHOUN CO. | 0101 | TRANSVERSE MERCATOR | EASTERN ZONE | |
| 01 | 017 | AL | CHAMBERS CO. | 0101 | TRANSVERSE MERCATOR | EASTERN ZONE |