Example cloud config adapted from https://github.com/ged-lab/literate-resting/blob/master/kp/README.txt

kp.yml

#cloud-config

# Debug log
output: {all: '| tee -a /var/log/cloud-init-output.log'}

package_upgrade: true
packages:
- screen
- git
- curl
- gcc
- make
- g++
- python-dev
- unzip
- default-jre
- pkg-config
- libncurses5-dev
- r-base-core
- r-cran-gplots
- python-matplotlib
- sysstat

runcmd: |
    mkdir /mnt/data
    ln -fs /mnt/data /data
    cd /data
    curl -O http://athyra.idyll.org/~t/mrnaseq-subset.tar
    tar xvf mrnaseq-subset.tar

    cd /root
    rm -fr literate-resting khmer-protocols
    git clone https://github.com/ged-lab/literate-resting.git
    #git clone https://github.com/ged-lab/khmer-protocols.git -b release-test
    git clone https://github.com/ged-lab/khmer-protocols.git -b bench

    cd khmer-protocols/mrnaseq

    for i in [1-8]-*.txt
    do
       bash /root/literate-resting/scan.sh $i
    done

    ### START MONITORING

    for i in [1-8]-*.txt.sh
    do
       bash $i
    done

## Specify public keys:
ssh_authorized_keys:
- ssh-rsa ...