Created
February 23, 2012 19:43
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Mangling science data
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| "axisID": "", | |
| "constraint": { | |
| "pattern": "", | |
| "type_": "AllowedTokens", | |
| "values": [ | |
| ] | |
| }, | |
| "code_space": "", | |
| "value": "vertex", | |
| "updatable": True, | |
| "type_": "CategoryElement", | |
| "nil_value_ids": [ | |
| ], | |
| "label": "", | |
| "optional": False, | |
| "id": "" | |
| }, | |
| "constraint": { | |
| "significant_figures": -1, | |
| "type_": "AllowedValues", | |
| "intervals": [ | |
| ], | |
| "values": [ | |
| [ | |
| 0, | |
| 360 | |
| ] | |
| ] | |
| }, | |
| "label": "", | |
| "type_": "CoordinateAxis", | |
| "bounds_id": "", | |
| "updatable": True, | |
| "optional": False, | |
| "id": "", | |
| "values_path": "coordinates/longitude" | |
| }, | |
| "data_record": { | |
| "definition": "Definition of a data record for a CTD", | |
| "description": "", | |
| "updatable": False, | |
| "type_": "DataRecord", | |
| "field_ids": [ | |
| "temperature", | |
| "conductivity", | |
| "pressure" | |
| ], | |
| "label": "", | |
| "optional": False, | |
| "id": "", | |
| "domain_ids": [ | |
| "time_domain" | |
| ] | |
| }, | |
| "coordinate_vector": { | |
| "definition": "http://sweet.jpl.nasa.gov/2.0/space.owl#Location", | |
| "reference_frame": "http://www.opengis.net/def/crs/EPSG/0/4326", | |
| "description": "", | |
| "coordinate_ids": [ | |
| "longitude", | |
| "latitude", | |
| "pressure_data", | |
| "time" | |
| ], | |
| "updatable": True, | |
| "type_": "Vector", | |
| "local_frame": "", | |
| "label": "", | |
| "optional": False, | |
| "id": "" | |
| }, | |
| "pressure": { | |
| "definition": "http://sweet.jpl.nasa.gov/2.0/physThermo.owl#Pressure", | |
| "description": "", | |
| "domain_id": "time_domain", | |
| "label": "", | |
| "type_": "Coverage", | |
| "range_id": "pressure_data", | |
| "updatable": False, | |
| "optional": True, | |
| "id": "" | |
| }, | |
| "element_type": { | |
| "definition": "Ref to SeaBird data?", | |
| "description": "", | |
| "updatable": False, | |
| "type_": "ElementType", | |
| "data_record_id": "data_record", | |
| "label": "", | |
| "optional": False, | |
| "id": "" | |
| }, | |
| "time": { | |
| "definition": "http://www.opengis.net/def/property/OGC/0/SamplingTime", | |
| "reference_frame": "http://www.opengis.net/def/trs/OGC/0/GPS", | |
| "nil_values_ids": [ | |
| "nan_value" | |
| ], | |
| "unit_of_measure": { | |
| "type_": "UnitReferenceProperty", | |
| "code": "s", | |
| "reference": "" | |
| }, | |
| "description": "", | |
| "quality_id": "", | |
| "axis": "time", | |
| "mesh_location": { | |
| "definition": "", | |
| "reference_frame": "", | |
| "description": "", | |
| "quality_id": "", | |
| "axisID": "", | |
| "constraint": { | |
| "pattern": "", | |
| "type_": "AllowedTokens", | |
| "values": [ | |
| ] | |
| }, | |
| "code_space": "", | |
| "value": "vertex", | |
| "updatable": True, | |
| "type_": "CategoryElement", | |
| "nil_value_ids": [ | |
| ], | |
| "label": "", | |
| "optional": False, | |
| "id": "" | |
| }, | |
| "constraint": { | |
| "significant_figures": -1, | |
| "type_": "AllowedValues", | |
| "intervals": [ | |
| ], | |
| "values": [ | |
| ] | |
| }, | |
| "label": "", | |
| "type_": "CoordinateAxis", | |
| "bounds_id": "", | |
| "updatable": True, | |
| "optional": False, | |
| "id": "", | |
| "values_path": "coordinates/time" | |
| }, | |
| "temp_data": { | |
| "definition": "http://sweet.jpl.nasa.gov/2.0/physThermo.owl#Temperature", | |
| "reference_frame": "", | |
| "nil_values_ids": [ | |
| "nan_value" | |
| ], | |
| "unit_of_measure": { | |
| "type_": "UnitReferenceProperty", | |
| "code": "Cel", | |
| "reference": "" | |
| }, | |
| "description": "", | |
| "quality_id": "", | |
| "mesh_location": { | |
| "definition": "", | |
| "reference_frame": "", | |
| "description": "", | |
| "quality_id": "", | |
| "axisID": "", | |
| "constraint": { | |
| "pattern": "", | |
| "type_": "AllowedTokens", | |
| "values": [ | |
| ] | |
| }, | |
| "code_space": "", | |
| "value": "vertex", | |
| "updatable": True, | |
| "type_": "CategoryElement", | |
| "nil_value_ids": [ | |
| ], | |
| "label": "", | |
| "optional": False, | |
| "id": "" | |
| }, | |
| "constraint": { | |
| "significant_figures": -1, | |
| "type_": "AllowedValues", | |
| "intervals": [ | |
| ], | |
| "values": [ | |
| [ | |
| -10, | |
| 50 | |
| ] | |
| ] | |
| }, | |
| "label": "", | |
| "type_": "RangeSet", | |
| "bounds_id": "", | |
| "updatable": True, | |
| "optional": False, | |
| "id": "", | |
| "values_path": "fields/temp_data" | |
| }, | |
| "time_domain": { | |
| "definition": "Spec for ctd data time domain", | |
| "coordinate_vector_id": "coordinate_vector", | |
| "description": "", | |
| "label": "", | |
| "type_": "Domain", | |
| "mesh_id": "point_timeseries", | |
| "updatable": "False", | |
| "optional": "False", | |
| "id": "" | |
| }, | |
| "latitude": { | |
| "definition": "http://sweet.jpl.nasa.gov/2.0/spaceCoordinates.owl#Latitude", | |
| "reference_frame": "", | |
| "nil_values_ids": [ | |
| "nan_value" | |
| ], | |
| "unit_of_measure": { | |
| "type_": "UnitReferenceProperty", | |
| "code": "deg", | |
| "reference": "" | |
| }, | |
| "description": "", | |
| "quality_id": "", | |
| "axis": "Latitude", | |
| "mesh_location": { | |
| "definition": "", | |
| "reference_frame": "", | |
| "description": "", | |
| "quality_id": "", | |
| "axisID": "", | |
| "constraint": { | |
| "pattern": "", | |
| "type_": "AllowedTokens", | |
| "values": [ | |
| ] | |
| }, | |
| "code_space": "", | |
| "value": "vertex", | |
| "updatable": True, | |
| "type_": "CategoryElement", | |
| "nil_value_ids": [ | |
| ], | |
| "label": "", | |
| "optional": False, | |
| "id": "" | |
| }, | |
| "constraint": { | |
| "significant_figures": -1, | |
| "type_": "AllowedValues", | |
| "intervals": [ | |
| ], | |
| "values": [ | |
| [ | |
| -90, | |
| 90 | |
| ] | |
| ] | |
| }, | |
| "label": "", | |
| "type_": "CoordinateAxis", | |
| "bounds_id": "", | |
| "updatable": True, | |
| "optional": False, | |
| "id": "", | |
| "values_path": "coordinates/latitude" | |
| }, | |
| "cndr_data": { | |
| "definition": "http://sweet.jpl.nasa.gov/2.0/physThermo.owl#Conductivity", | |
| "reference_frame": "", | |
| "nil_values_ids": [ | |
| "nan_value" | |
| ], | |
| "unit_of_measure": { | |
| "type_": "UnitReferenceProperty", | |
| "code": "mS/cm", | |
| "reference": "" | |
| }, | |
| "description": "", | |
| "quality_id": "", | |
| "mesh_location": { | |
| "definition": "", | |
| "reference_frame": "", | |
| "description": "", | |
| "quality_id": "", | |
| "axisID": "", | |
| "constraint": { | |
| "pattern": "", | |
| "type_": "AllowedTokens", | |
| "values": [ | |
| ] | |
| }, | |
| "code_space": "", | |
| "value": "vertex", | |
| "updatable": True, | |
| "type_": "CategoryElement", | |
| "nil_value_ids": [ | |
| ], | |
| "label": "", | |
| "optional": False, | |
| "id": "" | |
| }, | |
| "constraint": { | |
| "significant_figures": -1, | |
| "type_": "AllowedValues", | |
| "intervals": [ | |
| ], | |
| "values": [ | |
| [ | |
| 0, | |
| 85 | |
| ] | |
| ] | |
| }, | |
| "label": "", | |
| "type_": "RangeSet", | |
| "bounds_id": "", | |
| "updatable": True, | |
| "optional": False, | |
| "id": "", | |
| "values_path": "fields/cndr_data" | |
| }, | |
| "ctd_data": { | |
| "description": "Conductivity temperature and depth observations from a Seabird CTD", | |
| "element_type_id": "element_type", | |
| "element_count_id": "record_count", | |
| "type_": "DataStream", | |
| "label": "Seabird CTD Data", | |
| "encoding_id": "stream_encoding", | |
| "values": None, | |
| "id": None | |
| }, | |
| "conductivity": { | |
| "definition": "http://sweet.jpl.nasa.gov/2.0/physThermo.owl#Conductivity", | |
| "description": "", | |
| "domain_id": "time_domain", | |
| "label": "", | |
| "type_": "Coverage", | |
| "range_id": "cndr_data", | |
| "updatable": False, | |
| "optional": True, | |
| "id": "" | |
| } | |
| }, | |
| "stream_resource_id": "55cf756bb3cc4245bf90f727cc27e984", | |
| "type_": "StreamDefinitionContainer", | |
| "data_stream_id": "ctd_data" | |
| } | |
| def get_hdf_data(path): | |
| hdf = { | |
| '/east/conductivity':[1,2,3,4,5], | |
| '/west/conductivity':[1,2,3,4,5], | |
| '/east/temperature':[48,48,48,48,48], | |
| '/west/temperature':[46,46,46,46,46], | |
| '/east/pressure':[0,20,40,60], | |
| '/west/pressure':[0,20,40,60] | |
| } | |
| return hdf[path] | |
| def records(n, sub): | |
| while True: | |
| yval = [] | |
| try: | |
| for i in xrange(sub): | |
| yval = yval + [n.pop(0)] | |
| yield yval | |
| except IndexError: | |
| if yval: | |
| yield yval | |
| break | |
| class tree(dict): | |
| def __init__(self, **kwargs): | |
| for k,v in kwargs.iteritems(): | |
| if isinstance(v, dict): | |
| self[k] = tree(**v) | |
| else: | |
| self[k] = v | |
| def __getattr__(self, key): | |
| if not hasattr(self, key): | |
| return None | |
| return self[key] | |
| def __setattr__(self, key,val): | |
| self[key] = val | |
| def __dir__(self): | |
| v = dir(super(tree,self)) | |
| return v + self.keys() | |
| def key(definition, key): | |
| return definition['identifiables'][key] | |
| root_node = None | |
| ''' | |
| For every | |
| ''' | |
| def traverse(definition, node_id): | |
| tmp = key(definition,node_id) | |
| root = tree(**tmp) | |
| for k,v in tmp.iteritems(): | |
| if k.endswith('_id'): | |
| if v: | |
| root[v] = traverse(definition,v) | |
| elif k.endswith('_ids'): | |
| for value in v: | |
| if value: | |
| root[value] = traverse(definition,value) | |
| return root | |
| def to_tree(definition): | |
| identifiables = tree(**definition['identifiables']) | |
| data_stream_id = definition['data_stream_id'] | |
| data_stream = tree(**identifiables[definition['data_stream_id']]) | |
| data_stream.encoding = tree(**identifiables[data_stream.encoding_id]) | |
| data_stream.element_type = tree(**identifiables[data_stream.element_type_id]) | |
| data_stream.element_count = tree(**identifiables[data_stream.element_count_id]) | |
| data_stream.element_type.data_record = tree(**identifiables[data_stream.element_type.data_record_id]) | |
| data_record = data_stream.element_type.data_record | |
| data_record.fields = tree() | |
| for field_id in data_record.field_ids: | |
| data_record.fields[field_id] = tree(**identifiables[field_id]) | |
| for k,field in data_record.fields.iteritems(): | |
| data_record.fields[k].domain = tree(**identifiables[field.domain_id]) | |
| data_record.fields[k].range = tree(**identifiables[field.range_id]) | |
| return data_stream | |
| if __name__ == '__main__': | |
| from pprint import pprint | |
| root = traverse(definition,definition['data_stream_id']) | |
| pprint(root) |
because granule is a dictionary not a dotdict
in this script
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Why aren't you using the dot notation?
granule.identifiables ?