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March 3, 2020 22:49
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Binary files master/.DS_Store and tiago/.DS_Store differ | |
Binary files master/cms004/.DS_Store and tiago/cms004/.DS_Store differ | |
diff -r master/cms004/experimental.json tiago/cms004/experimental.json | |
3c3 | |
< "output_dir_s3": "s3://idseq-samples-development/samples/406/14224/postprocess", | |
--- | |
> "output_dir_s3": "s3://idseq-samples-development/samples/407/14227/postprocess", | |
157c157 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14224/results/3.19" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14227/results/3.19" | |
160c160 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14224/results/3.19" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14227/results/3.19" | |
163c163 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14224/postprocess/3.19/assembly" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14227/postprocess/3.19/assembly" | |
166c166 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14224/postprocess/3.19/assembly" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14227/postprocess/3.19/assembly" | |
169c169 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14224/fastqs" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14227/fastqs" | |
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< "s3_dir": "s3://idseq-samples-development/samples/406/14224/postprocess/3.19/assembly" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14227/postprocess/3.19/assembly" | |
diff -r master/cms004/host_filter.json tiago/cms004/host_filter.json | |
3c3 | |
< "output_dir_s3": "s3://idseq-samples-development/samples/406/14224/results", | |
--- | |
> "output_dir_s3": "s3://idseq-samples-development/samples/407/14227/results", | |
218c218 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14224/fastqs", | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14227/fastqs", | |
diff -r master/cms004/non_host_alignment.json tiago/cms004/non_host_alignment.json | |
3c3 | |
< "output_dir_s3": "s3://idseq-samples-development/samples/406/14224/results", | |
--- | |
> "output_dir_s3": "s3://idseq-samples-development/samples/407/14227/results", | |
109c109 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14224/results/3.19" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14227/results/3.19" | |
diff -r master/cms004/postprocess.json tiago/cms004/postprocess.json | |
3c3 | |
< "output_dir_s3": "s3://idseq-samples-development/samples/406/14224/postprocess", | |
--- | |
> "output_dir_s3": "s3://idseq-samples-development/samples/407/14227/postprocess", | |
246c246 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14224/results/3.19" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14227/results/3.19" | |
249c249 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14224/results/3.19" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14227/results/3.19" | |
252c252 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14224/results/3.19" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14227/results/3.19" | |
Only in master/echo: .DS_Store | |
diff -r master/echo/experimental.json tiago/echo/experimental.json | |
3c3 | |
< "output_dir_s3": "s3://idseq-samples-development/samples/406/14225/postprocess", | |
--- | |
> "output_dir_s3": "s3://idseq-samples-development/samples/407/14228/postprocess", | |
56,57c56,57 | |
< "EchoExp2_H2O_1x_S9_R1_001.fa", | |
< "EchoExp2_H2O_1x_S9_R2_001.fa" | |
--- | |
> "EchoExp2_H2O_1x_S9_R1_001.fastq.gz", | |
> "EchoExp2_H2O_1x_S9_R2_001.fastq.gz" | |
63,64c63,64 | |
< "nonhost_R1.fasta", | |
< "nonhost_R2.fasta" | |
--- | |
> "nonhost_R1.fastq", | |
> "nonhost_R2.fastq" | |
123c123 | |
< "file_ext": "fasta" | |
--- | |
> "file_ext": "fastq" | |
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< "s3_dir": "s3://idseq-samples-development/samples/406/14225/results/3.19" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14228/results/3.19" | |
160c160 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14225/results/3.19" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14228/results/3.19" | |
163c163 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14225/postprocess/3.19/assembly" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14228/postprocess/3.19/assembly" | |
166c166 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14225/postprocess/3.19/assembly" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14228/postprocess/3.19/assembly" | |
169c169 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14225/fastqs" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14228/fastqs" | |
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< "s3_dir": "s3://idseq-samples-development/samples/406/14225/postprocess/3.19/assembly" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14228/postprocess/3.19/assembly" | |
diff -r master/echo/host_filter.json tiago/echo/host_filter.json | |
3c3 | |
< "output_dir_s3": "s3://idseq-samples-development/samples/406/14225/results", | |
--- | |
> "output_dir_s3": "s3://idseq-samples-development/samples/407/14228/results", | |
6,7c6,7 | |
< "EchoExp2_H2O_1x_S9_R1_001.fa", | |
< "EchoExp2_H2O_1x_S9_R2_001.fa" | |
--- | |
> "EchoExp2_H2O_1x_S9_R1_001.fastq.gz", | |
> "EchoExp2_H2O_1x_S9_R2_001.fastq.gz" | |
11,12c11,12 | |
< "valid_input1.fasta", | |
< "valid_input2.fasta" | |
--- | |
> "valid_input1.fastq", | |
> "valid_input2.fastq" | |
15,16c15,16 | |
< "unmapped1.fasta", | |
< "unmapped2.fasta" | |
--- | |
> "unmapped1.fastq", | |
> "unmapped2.fastq" | |
19,20c19,20 | |
< "trimmomatic1.fasta", | |
< "trimmomatic2.fasta" | |
--- | |
> "trimmomatic1.fastq", | |
> "trimmomatic2.fastq" | |
62c62 | |
< "file_ext": "fasta" | |
--- | |
> "file_ext": "fastq" | |
181c181 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14225/fastqs", | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14228/fastqs", | |
diff -r master/echo/non_host_alignment.json tiago/echo/non_host_alignment.json | |
3c3 | |
< "output_dir_s3": "s3://idseq-samples-development/samples/406/14225/results", | |
--- | |
> "output_dir_s3": "s3://idseq-samples-development/samples/407/14228/results", | |
111c111 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14225/results/3.19" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14228/results/3.19" | |
diff -r master/echo/postprocess.json tiago/echo/postprocess.json | |
3c3 | |
< "output_dir_s3": "s3://idseq-samples-development/samples/406/14225/postprocess", | |
--- | |
> "output_dir_s3": "s3://idseq-samples-development/samples/407/14228/postprocess", | |
248c248 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14225/results/3.19" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14228/results/3.19" | |
251c251 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14225/results/3.19" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14228/results/3.19" | |
254c254 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14225/results/3.19" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14228/results/3.19" | |
Binary files master/norg17/.DS_Store and tiago/norg17/.DS_Store differ | |
diff -r master/norg17/experimental.json tiago/norg17/experimental.json | |
3c3 | |
< "output_dir_s3": "s3://idseq-samples-development/samples/405/14222/postprocess", | |
--- | |
> "output_dir_s3": "s3://idseq-samples-development/samples/405/14221/postprocess", | |
157c157 | |
< "s3_dir": "s3://idseq-samples-development/samples/405/14222/results/3.19" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/405/14221/results/3.19" | |
160c160 | |
< "s3_dir": "s3://idseq-samples-development/samples/405/14222/results/3.19" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/405/14221/results/3.19" | |
163c163 | |
< "s3_dir": "s3://idseq-samples-development/samples/405/14222/postprocess/3.19/assembly" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/405/14221/postprocess/3.19/assembly" | |
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< "s3_dir": "s3://idseq-samples-development/samples/405/14222/postprocess/3.19/assembly" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/405/14221/postprocess/3.19/assembly" | |
169c169 | |
< "s3_dir": "s3://idseq-samples-development/samples/405/14222/fastqs" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/405/14221/fastqs" | |
172c172 | |
< "s3_dir": "s3://idseq-samples-development/samples/405/14222/postprocess/3.19/assembly" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/405/14221/postprocess/3.19/assembly" | |
diff -r master/norg17/host_filter.json tiago/norg17/host_filter.json | |
3c3 | |
< "output_dir_s3": "s3://idseq-samples-development/samples/405/14222/results", | |
--- | |
> "output_dir_s3": "s3://idseq-samples-development/samples/405/14221/results", | |
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< "nucleotide_type": "RNA", | |
--- | |
> "nucleotide_type": "DNA", | |
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< "s3_dir": "s3://idseq-samples-development/samples/405/14222/fastqs", | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/405/14221/fastqs", | |
diff -r master/norg17/non_host_alignment.json tiago/norg17/non_host_alignment.json | |
3c3 | |
< "output_dir_s3": "s3://idseq-samples-development/samples/405/14222/results", | |
--- | |
> "output_dir_s3": "s3://idseq-samples-development/samples/405/14221/results", | |
111c111 | |
< "s3_dir": "s3://idseq-samples-development/samples/405/14222/results/3.19" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/405/14221/results/3.19" | |
diff -r master/norg17/postprocess.json tiago/norg17/postprocess.json | |
3c3 | |
< "output_dir_s3": "s3://idseq-samples-development/samples/405/14222/postprocess", | |
--- | |
> "output_dir_s3": "s3://idseq-samples-development/samples/405/14221/postprocess", | |
248c248 | |
< "s3_dir": "s3://idseq-samples-development/samples/405/14222/results/3.19" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/405/14221/results/3.19" | |
251c251 | |
< "s3_dir": "s3://idseq-samples-development/samples/405/14222/results/3.19" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/405/14221/results/3.19" | |
254c254 | |
< "s3_dir": "s3://idseq-samples-development/samples/405/14222/results/3.19" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/405/14221/results/3.19" | |
Binary files master/rr004/.DS_Store and tiago/rr004/.DS_Store differ | |
diff -r master/rr004/experimental.json tiago/rr004/experimental.json | |
3c3 | |
< "output_dir_s3": "s3://idseq-samples-development/samples/406/14223/postprocess", | |
--- | |
> "output_dir_s3": "s3://idseq-samples-development/samples/407/14226/postprocess", | |
155c155 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14223/results/3.19" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14226/results/3.19" | |
158c158 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14223/results/3.19" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14226/results/3.19" | |
161c161 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14223/postprocess/3.19/assembly" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14226/postprocess/3.19/assembly" | |
164c164 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14223/postprocess/3.19/assembly" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14226/postprocess/3.19/assembly" | |
167c167 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14223/fastqs" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14226/fastqs" | |
170c170 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14223/postprocess/3.19/assembly" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14226/postprocess/3.19/assembly" | |
diff -r master/rr004/host_filter.json tiago/rr004/host_filter.json | |
3c3 | |
< "output_dir_s3": "s3://idseq-samples-development/samples/406/14223/results", | |
--- | |
> "output_dir_s3": "s3://idseq-samples-development/samples/407/14226/results", | |
202c202 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14223/fastqs", | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14226/fastqs", | |
diff -r master/rr004/non_host_alignment.json tiago/rr004/non_host_alignment.json | |
3c3 | |
< "output_dir_s3": "s3://idseq-samples-development/samples/406/14223/results", | |
--- | |
> "output_dir_s3": "s3://idseq-samples-development/samples/407/14226/results", | |
109c109 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14223/results/3.19" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14226/results/3.19" | |
diff -r master/rr004/postprocess.json tiago/rr004/postprocess.json | |
3c3 | |
< "output_dir_s3": "s3://idseq-samples-development/samples/406/14223/postprocess", | |
--- | |
> "output_dir_s3": "s3://idseq-samples-development/samples/407/14226/postprocess", | |
246c246 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14223/results/3.19" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14226/results/3.19" | |
249c249 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14223/results/3.19" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14226/results/3.19" | |
252c252 | |
< "s3_dir": "s3://idseq-samples-development/samples/406/14223/results/3.19" | |
--- | |
> "s3_dir": "s3://idseq-samples-development/samples/407/14226/results/3.19" |
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