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lwaldron/diabimmune.R

Created February 2, 2022 16:54
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diabimmune.R
# See https://diabimmune.broadinstitute.org/diabimmune/antibiotics-cohort/resources/16s-sequence-data
# The provided command `wget -r -np -nd https://pubs.broadinstitute.org/diabimmune/data/15` does not work because files are listed in an html page
library(dplyr)
library(rvest)
url <- "https://diabimmune.broadinstitute.org/diabimmune/data/15/"
url %>%
read_html() %>%
html_elements("a") %>%
html_attr("href") %>%
download.file(., destfile = basename(.))
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