Here's a list of Links
- Google Cloud console --> https://console.cloud.google.com/
- GCP-for-Bioinformatics --> https://github.com/lynnlangit/gcp-for-bioinformatics
- List of GCP Services --> https://cloud.google.com/terms/services
- Cloud Storage --> https://github.com/lynnlangit/gcp-for-bioinformatics/blob/master/1_Files_%26_Data/1_Use_Cloud_Storage_for_files.md
- Best Practices / Storage Summary --> https://isb-cancer-genomics-cloud.readthedocs.io/en/latest/sections/BestPractices.html#best-practices
- Cloud DLP Use Cases --> https://cloud.google.com/dlp#section-6
- Public Data Sets --> https://github.com/lynnlangit/gcp-for-bioinformatics/blob/master/1_Files_%26_Data/2_Use_public_genomic_datasets.md
- GCP Marketplace Public Health Datasets --> https://console.cloud.google.com/marketplace/browse?filter=solution-type:dataset&filter=category:health
- Design Data Storage Strategy --> https://github.com/lynnlangit/gcp-for-bioinformatics/blob/master/1_Files_%26_Data/whitepapers/designing_and_deploying_data_security_strategy.pdf
- BigQuery --> https://github.com/lynnlangit/gcp-for-bioinformatics/blob/master/1_Files_%26_Data/3_Use_BigQuery_to_query_files.md
- USE FOR CLASS - example queries --> https://cloud.google.com/life-sciences/docs/how-tos/analyze-variants
- Advanced Genomics BigQuery Examples --> https://cloud.google.com/life-sciences/docs/tutorials/analyze-variants-advanced
- Big List of Example Genomic BigQueries --> https://github.com/verilylifesciences/variant-qc/tree/main/sql
- BigQuery SQL Course --> https://github.com/lynnlangit/gcp-for-bioinformatics/blob/master/1_Files_%26_Data/6a_SQLQuestions.md
- VariantSpark --> https://bioinformatics.csiro.au/variantspark/
- GCP Genomics Reference Architecture --> https://cloud.google.com/architecture/genomic-data-processing-reference-architecture
- samtools Deployments --> https://github.com/lynnlangit/gcp-for-bioinformatics/tree/master/7_samtools_deployments
- GCP Cloud Pricing Calculator --> https://cloud.google.com/products/calculator
- CloudFunctions --> https://github.com/lynnlangit/gcp-for-bioinformatics/tree/master/5_Serverless_Compute_with_Functions
- Comparision of Genomic Workflow Languages --> https://storage.googleapis.com/webapp-prod-static-files/static/img/prog_access/workflow_comparisons.pdf
- Parabricks workflows (WDL, NF) --> https://github.com/clara-parabricks-workflows
- Install workflows and examples --> https://isb-cancer-genomics-cloud.readthedocs.io/en/latest/sections/gcp-info/Cheatsheet.html#vm-workflow-tools-installation-cheat-sheet
- Google Batch --> https://github.com/lynnlangit/gcp-for-bioinformatics/blob/master/2_Virtual_Machines_%26_Docker_Containers/6b_Use_Batch_API.md
- NextFlow --> https://www.nextflow.io/
- NF/Core quick start (scroll down to bottom) --> https://nf-co.re/
- NF/Core Tools (downloads) --> https://nf-co.re/tools/
- NF/Core Modules List --> https://nf-co.re/modules
- NF/Core RNASeq --> https://nf-co.re/rnaseq
- NF/Core lncpipe --> https://nf-co.re/lncpipe
- NF/Core Spatial Transcriptomics --> https://nf-co.re/spatialtranscriptomics?q=spat
- AlphaFold on GCP --> https://github.com/lynnlangit/gcp-for-bioinformatics/blob/master/3_Machine_Learning/5d_Use_AlphaFold.md
- GCP Reference Architectures --> https://cloud.google.com/architecture
- Course at gcp-for-bioinformatics --> https://github.com/lynnlangit/gcp-for-bioinformatics (Includes YouTube playlist)
- Example GCP scripts and enterprise patterns at gcp-essentials --> https://github.com/lynnlangit/gcp-essentials
- Example ML notebooks at gcp-ml - https://github.com/lynnlangit/gcp-ml
- Notes on bioinformatics tools, patterns and implementation on all public clouds at team-teri --> https://github.com/lynnlangit/TeamTeri
- Example WDL files (for genomics) at learn wdl --> https://github.com/openwdl/learn-wdl (Includes YouTube playlist)
- Article example of building a Data Lake for genomic analysis on AWS (went from 500 hours to 10 minutes) --> https://medium.com/@lynnlangit/scaling-custom-machine-learning-on-aws-part-3-kubernetes-5427d96f825b
- Related Courses on Linked In Learning --> https://www.linkedin.com/learning/instructors/lynn-langit
- GCP Essentials
- GCP Enterprise Essentials
- GCP Tools
- GCP Machine Learning
- GCP Cost Control
- Scaling Cloud Spark (uses GCP Dataproc)
- Serverless Cloud Architectures