Here's a list of Links
- Google Cloud console --> https://console.cloud.google.com/
- GCP-for-Bioinformatics --> https://github.com/lynnlangit/gcp-for-bioinformatics
Here's a list of Links
#!/usr/bin/env nextflow | |
params.str = 'Hello world!' | |
process splitLetters { | |
output: | |
file 'chunk_*' into letters | |
""" |
#!/usr/bin/env nextflow | |
nextflow.enable.dsl=2 | |
process sayHello{ | |
input: | |
val djaeet | |
output: | |
stdout | |
FROM google/cloud-sdk:295.0.0 | |
# Tell gcloud to save state in /.config so it's easy to override as a mounted volume. | |
ENV HOME=/ | |
# install python3 to make that also available - modified from https://tecadmin.net/install-python-3-7-on-ubuntu-linuxmint/ | |
RUN apt-get install -y build-essential checkinstall \ | |
&& apt-get install -y libreadline-gplv2-dev libncursesw5-dev libssl-dev libsqlite3-dev \ | |
tk-dev libgdbm-dev libc6-dev libbz2-dev libffi-dev zlib1g-dev liblzma-dev\ | |
&& cd /usr/bin \ |
Category | Type | Alibaba | AWS | Notes | |
---|---|---|---|---|---|
Security | Resources | RAM | IAM | for users/roles/permissions via policies | |
Storage | Objects | OSS | s3 | not all features in USRegion | |
Storage | Blocks | EBS | EBS | with Compute (VMs) | |
Storage | Other | NAS | EFS | file server | |
Compute | VMs | ECS | EC2 | n/a | |
Compute | Containers | Container Service | EKS/ECS/Fargate | differs | |
Compute | Functions | Function Compute | Lambda | n/a | |
Data | RDBSM | ApsaraDB for RDS | RDS | n/a | |
Data | Serverless NoSQL | TableStore | DynamoDB | n/a |
Image or Article, Link, Slide Section, Notes | |
Title Image, www.amazon.in/Gene-Machine-Decipher-Secrets-Ribosome-ebook/dp/B07B8LF2DQ, 1, Ribosome | |
Alibaba architecture, img.alicdn.com/tfs/TB1OuNEG7yWBuNjy0FpXXassXXa-1530-1140.png, 1, for GT-Scan2 | |
GCP icons, cacoo.com/wp-app/uploads/2018/02/GCP-Symbols.png, 1, all icons | |
AWS ML, www.lynda.com/Amazon-Web-Services-tutorials/Amazon-Web-Services-Machine-Learning-Essential-Training/624308-2.html, 1, from Lynda.com course | |
GCP ML, www.lynda.com/Google-Cloud-tutorials/Google-Cloud-Platform-Machine-Learning-Essential-Training/738138-2.html, 1, from Lynda.com course | |
50% sequnced, www.genome.gov/about-genomics/fact-sheets/DNA-Sequencing-Costs-Data, 2, stat | |
GT-Scan2, www.computerworld.com.au/article/647046/csiro-launches-serverless-search-engine-genome-alibaba-cloud/, 2, screen from app | |
X-Ray & GT-Scan2, aws.amazon.com/blogs/publicsector/faster-genome-search-via-aws-x-ray/, 2, AWS blog post | |
Alibaba & GT-Scan2, www.alibabacloud.com/blog/gt-scan2-bringing-bioinformatics-to-alib |
# Start | |
[https://cloud.google.com/kubernetes-engine/docs/tutorials/gitops-cloud-build](https://cloud.google.com/kubernetes-engine/docs/tutorials/gitops-cloud-build) | |
gcloud commands as a GitHub gist - [https://gist.github.com/lynnlangit/725f44779641a0e2c5b2bacb9768e04e](https://gist.github.com/lynnlangit/725f44779641a0e2c5b2bacb9768e04e) | |
# Use GCP test project | |
gcloud config set project [PROJECT_ID] | |
# Enable APIs |
#include <iostream> | |
#include <cstdlib> | |
class Node | |
{ | |
public: | |
Node* next; | |
int data; | |
}; |
<!DOCTYPE html> | |
<html style="background-image:url(img/watefall01.jpg)"> | |
<head> | |
<meta charset="utf-8" /> | |
<title>Waterfall Express</title> | |
<script src="https://ajax.googleapis.com/ajax/libs/jquery/3.3.1/jquery.min.js"></script> |
Type | Service | Notes | |
---|---|---|---|
Data | S3 | Location & input file types | |
Compute | EC2 | Type & Quantity & Pricing | |
Kubernetes & Hadoop | EKS | Number of cores & total memory & Driver config | |
Spark | Spark | Spark version & executor count/size & more | |
Algorithm | VariantSpark | Input files & Tree-building params |