Created
March 22, 2013 22:46
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Error output for my first theano exp test script, when submitted to a compute node on SciNet.
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| [support code lies above, omitted here] | |
| 608 ////////////////////// | |
| 609 //// Functions | |
| 610 ////////////////////// | |
| 611 static PyObject * instantiate(PyObject * self, PyObject *argtuple) { | |
| 612 assert(PyTuple_Check(argtuple)); | |
| 613 if (3 != PyTuple_Size(argtuple)){ | |
| 614 PyErr_Format(PyExc_TypeError, "Wrong number of arguments, expected 3, got %i", (int)PyTuple_Size(argtuple)); | |
| 615 return NULL; | |
| 616 } | |
| 617 __struct_compiled_op_c94a8a2058c469a818e70c06314ee46b* struct_ptr = new __struct_compiled_op_c94a8a2058c469a818e70c06314ee46b(); | |
| 618 struct_ptr->init( PyTuple_GET_ITEM(argtuple, 0),PyTuple_GET_ITEM(argtuple, 1),PyTuple_GET_ITEM(argtuple, 2) ); | |
| 619 PyObject* thunk = PyCObject_FromVoidPtrAndDesc((void*)(&__struct_compiled_op_c94a8a2058c469a818e70c06314ee46b_executor), struct_ptr, __struct_compiled_op_c94a8a2058c469a | |
| 818e70c06314ee46b_destructor); | |
| 620 return thunk; } | |
| 621 | |
| 622 ////////////////////// | |
| 623 //// Module init | |
| 624 ////////////////////// | |
| 625 static PyMethodDef MyMethods[] = { | |
| 626 {"instantiate", instantiate, METH_VARARGS, "undocumented"} , | |
| 627 {NULL, NULL, 0, NULL} | |
| 628 }; | |
| 629 PyMODINIT_FUNC initc94a8a2058c469a818e70c06314ee46b(void){ | |
| 630 import_array(); | |
| 631 (void) Py_InitModule("c94a8a2058c469a818e70c06314ee46b", MyMethods); | |
| 632 } | |
| 633 | |
| =============================== | |
| In file included from /scinet/gpc/tools/Python/Python272-shared/include/python2.7/Python.h:8, | |
| from mod.cu:1: | |
| /scinet/gpc/tools/Python/Python272-shared/include/python2.7/pyconfig.h:1155:1: warning: "_POSIX_C_SOURCE" redefined | |
| In file included from /scinet/arc/cuda-4.1/include/host_config.h:114, | |
| from /scinet/arc/cuda-4.1/include/cuda_runtime.h:59, | |
| from <command-line>:0: | |
| /usr/include/features.h:162:1: warning: this is the location of the previous definition | |
| In file included from /scinet/gpc/tools/Python/Python272-shared/include/python2.7/Python.h:8, | |
| from mod.cu:1: | |
| /scinet/gpc/tools/Python/Python272-shared/include/python2.7/pyconfig.h:1177:1: warning: "_XOPEN_SOURCE" redefined | |
| In file included from /scinet/arc/cuda-4.1/include/host_config.h:114, | |
| from /scinet/arc/cuda-4.1/include/cuda_runtime.h:59, | |
| from <command-line>:0: | |
| /usr/include/features.h:164:1: warning: this is the location of the previous definition | |
| mod.cu(188): warning: statement is unreachable | |
| mod.cu(217): warning: statement is unreachable | |
| In file included from /scinet/gpc/tools/Python/Python272-shared/include/python2.7/Python.h:8, | |
| from mod.cu:1: | |
| /scinet/gpc/tools/Python/Python272-shared/include/python2.7/pyconfig.h:1155:1: warning: "_POSIX_C_SOURCE" redefined | |
| In file included from /scinet/arc/cuda-4.1/include/host_config.h:114, | |
| from /scinet/arc/cuda-4.1/include/cuda_runtime.h:59, | |
| from <command-line>:0: | |
| /usr/include/features.h:162:1: warning: this is the location of the previous definition | |
| In file included from /scinet/gpc/tools/Python/Python272-shared/include/python2.7/Python.h:8, | |
| from mod.cu:1: | |
| /scinet/gpc/tools/Python/Python272-shared/include/python2.7/pyconfig.h:1177:1: warning: "_XOPEN_SOURCE" redefined | |
| In file included from /scinet/arc/cuda-4.1/include/host_config.h:114, | |
| from /scinet/arc/cuda-4.1/include/cuda_runtime.h:59, | |
| from <command-line>:0: | |
| /usr/include/features.h:164:1: warning: this is the location of the previous definition | |
| mod.cu(188): warning: statement is unreachable | |
| mod.cu(217): warning: statement is unreachable | |
| /usr/bin/ld: skipping incompatible /scinet/arc/cuda-4.1/lib/libcudart.so when searching for -lcudart | |
| /usr/bin/ld: skipping incompatible /scinet/arc/cuda-4.1/lib/libcudart.so when searching for -lcudart | |
| /usr/bin/ld: skipping incompatible /scinet/arc/cuda-4.1/lib/libcublas.so when searching for -lcublas | |
| /usr/bin/ld: skipping incompatible /scinet/arc/cuda-4.1/lib/libcudart.so when searching for -lcudart | |
| /usr/bin/ld: skipping incompatible /scinet/arc/cuda-4.1/lib/libcudart.so when searching for -lcudart | |
| /usr/bin/ld: /home/scinet/gpc/cn/bin/../lib/gcc/x86_64-redhat-linux/4.4.6/libstdc++.a(ios_init.o): relocation R_X86_64_32 against `pthread_cancel' can not be used when making a shared object; recompile with -fPIC | |
| /home/scinet/gpc/cn/bin/../lib/gcc/x86_64-redhat-linux/4.4.6/libstdc++.a: could not read symbols: Bad value | |
| collect2: ld returned 1 exit status | |
| Traceback (most recent call last): | |
| File "theano_exp_test.py", line 30, in <module> | |
| f = function([], T.exp(x)) | |
| File "/home/z/zhaolei/lzamparo/lib/python2.7/site-packages/theano/compile/function.py", line 221, in function | |
| profile=profile) | |
| File "/home/z/zhaolei/lzamparo/lib/python2.7/site-packages/theano/compile/pfunc.py", line 506, in pfunc | |
| on_unused_input=on_unused_input) | |
| File "/home/z/zhaolei/lzamparo/lib/python2.7/site-packages/theano/compile/function_module.py", line 1339, in orig_function | |
| defaults) | |
| File "/home/z/zhaolei/lzamparo/lib/python2.7/site-packages/theano/compile/function_module.py", line 1167, in create | |
| _fn, _i, _o = self.linker.make_thunk(input_storage=input_storage_lists) | |
| File "/home/z/zhaolei/lzamparo/lib/python2.7/site-packages/theano/gof/link.py", line 383, in make_thunk | |
| output_storage = output_storage)[:3] | |
| File "/home/z/zhaolei/lzamparo/lib/python2.7/site-packages/theano/gof/vm.py", line 799, in make_all | |
| for node in order] | |
| File "/home/z/zhaolei/lzamparo/lib/python2.7/site-packages/theano/sandbox/cuda/__init__.py", line 244, in make_thunk | |
| compute_map, no_recycling) | |
| File "/home/z/zhaolei/lzamparo/lib/python2.7/site-packages/theano/gof/op.py", line 580, in make_thunk | |
| output_storage=node_output_storage) | |
| File "/home/z/zhaolei/lzamparo/lib/python2.7/site-packages/theano/gof/cc.py", line 913, in make_thunk | |
| keep_lock=keep_lock) | |
| File "/home/z/zhaolei/lzamparo/lib/python2.7/site-packages/theano/gof/cc.py", line 856, in __compile__ | |
| keep_lock=keep_lock) | |
| File "/home/z/zhaolei/lzamparo/lib/python2.7/site-packages/theano/gof/cc.py", line 1279, in cthunk_factory | |
| key=key, fn=self.compile_cmodule_by_step, keep_lock=keep_lock) | |
| File "/home/z/zhaolei/lzamparo/lib/python2.7/site-packages/theano/gof/cmodule.py", line 975, in module_from_key | |
| module = compile_steps.next() | |
| File "/home/z/zhaolei/lzamparo/lib/python2.7/site-packages/theano/gof/cc.py", line 1201, in compile_cmodule_by_step | |
| preargs=preargs) | |
| File "/home/z/zhaolei/lzamparo/lib/python2.7/site-packages/theano/sandbox/cuda/nvcc_compiler.py", line 391, in compile_str | |
| 'for cmd', ' '.join(cmd)) | |
| Exception: ('nvcc return status', 1, 'for cmd', 'nvcc -shared -g --maxrregcount=32 -O3 -use_fast_math -arch=sm_20 -m64 -Xcompiler -Wno-write-strings,-fno-math-errno,-Wno-unused-label,-Wno-unused-variable,-DCUDA_NDARRAY_CUH=90c42b258281d604500ad1a5624b6654,-D NPY_ARRAY_ENSURECOPY=NPY_ENSURECOPY,-D NPY_ARRAY_ALIGNED=NPY_ALIGNED,-D NPY_ARRAY_WRITEABLE=NPY_WRITEABLE,-D NPY_ARRAY_UPDATE_ALL=NPY_UPDATE_ALL,-D NPY_ARRAY_C_CONTIGUOUS=NPY_C_CONTIGUOUS,-D NPY_ARRAY_F_CONTIGUOUS=NPY_F_CONTIGUOUS,-fPIC -Xlinker -rpath,/scratch/z/zhaolei/lzamparo/theano_compiledir/compiledir_Linux-2.6.32-220.7.1.el6.x86_64-x86_64-with-centos-6.2-Final-x86_64-2.7.2/cuda_ndarray -Xlinker -rpath,/scinet/arc/cuda-4.1/lib -Xlinker -rpath,/scinet/arc/cuda-4.1/lib64 -I/scinet/arc/cuda-4.1/include -I/scratch/z/zhaolei/lzamparo/theano_compiledir/compiledir_Linux-2.6.32-220.7.1.el6.x86_64-x86_64-with-centos-6.2-Final-x86_64-2.7.2/cuda_ndarray -I/scinet/gpc/tools/Python/Python272-shared/lib/python2.7/site-packages/numpy/core/include -I/scinet/gpc/tools/Python/Python272-shared/include/python2.7 -I/home/z/zhaolei/lzamparo/lib/python2.7/site-packages/theano/sandbox/cuda -o /scratch/z/zhaolei/lzamparo/theano_compiledir/compiledir_Linux-2.6.32-220.7.1.el6.x86_64-x86_64-with-centos-6.2-Final-x86_64-2.7.2/tmp3XIBuO/c94a8a2058c469a818e70c06314ee46b.so mod.cu -L/scinet/arc/cuda-4.1/lib -L/scratch/z/zhaolei/lzamparo/theano_compiledir/compiledir_Linux-2.6.32-220.7.1.el6.x86_64-x86_64-with-centos-6.2-Final-x86_64-2.7.2/cuda_ndarray -L/scinet/arc/cuda-4.1/lib -L/scinet/arc/cuda-4.1/lib64 -L/scinet/gpc/tools/Python/Python272-shared/lib -lpython2.7 -lcudart -lcublas -lcuda_ndarray', '[GpuElemwise{exp,no_inplace}(<CudaNdarrayType(float32, vector)>)]') |
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