Emmanuel Noutahi maclandrol

## molfeat-chemgpt.ipynb

      
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                maclandrol
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## molecule_alignment.ipynb

      
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                maclandrol
                / molecule_alignment.ipynb
            
            
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              March 14, 2022 20:03
            
              
                template alignment
              
          
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## mdl_extended_parser.ipynb

      
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                maclandrol
                / mdl_extended_parser.ipynb
            
            
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              October 28, 2021 17:21
            
              
                MDL extended parser (Ketcher flavour)
              
          
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## import_ben_treemap.py
from pycountry_convert import country_alpha2_to_continent_code as a2ctc
from pycountry_convert import convert_continent_code_to_continent_name as ctc2ctn
from pycountry_convert import country_alpha3_to_country_alpha2 as a3a2
from pycountry_convert import country_alpha2_to_country_name as a2cn
from functools import partial
from d3IpyPlus import *
# let's keep the following columns only
datafile = "en_profile_country_ben_import_des.csv"
cols = ['year', 'country_origin_id', 'country_destination_id', 'import_val']

## tree_simul.py
#!/usr/bin/env python
from ete3 import Tree
import random


def delete_single_child_internal(t):
    """Utility function that removes internal nodes
    with a single child from tree"""

    for node in t.traverse("postorder"):

## comp_tree.py
#!/usr/bin/env python
from ete3 import Tree

# pseudo code
# binary rooted tree comparison
def equals(tree1, tree2):

    if tree1 == tree2:
        return True
    # checking only leaf names

## index.html
<!doctype html>
<html>
	<head>
		<meta charset="utf-8">
		<meta name="viewport" content="width=device-width, initial-scale=1.0, maximum-scale=1.0, user-scalable=no">

		<title>College made you dumber</title>

		<link rel="stylesheet" href="/static/css/reveal.css">
		<link rel="stylesheet" href="/static/css/theme/black.css">

## jekyll.py
# modification of config created here: https://gist.github.com/cscorley/9144544
try:
    from urllib.parse import quote  # Py 3
except ImportError:
    from urllib2 import quote  # Py 2
import os
import sys
from settings import template_path, template_file, build_dir, rel_img_path
f = None
for arg in sys.argv:

## disptree.py
from ete2 import PhyloNode, TreeStyle
import sys
if(len(sys.argv)<2):
    sys.exit("Usage : python disptree.py input output")
else:
    inputfile, output = sys.argv[1], sys.argv[2]
    t = PhyloNode(inputfile)
    ts = TreeStyle()
    ts.show_branch_length = True
    ts.show_branch_support = True

## concat.py
#!/usr/bin/env python
import argparse
from glob import glob
import os
try:
    from Bio.SeqRecord import SeqRecord
    from Bio import AlignIO
    from Bio.Align import MultipleSeqAlignment
    from Bio.Seq import Seq
    from Bio.Alphabet import generic_protein
	from pycountry_convert import country_alpha2_to_continent_code as a2ctc
	from pycountry_convert import convert_continent_code_to_continent_name as ctc2ctn
	from pycountry_convert import country_alpha3_to_country_alpha2 as a3a2
	from pycountry_convert import country_alpha2_to_country_name as a2cn
	from functools import partial
	from d3IpyPlus import *
	# let's keep the following columns only
	datafile = "en_profile_country_ben_import_des.csv"
	cols = ['year', 'country_origin_id', 'country_destination_id', 'import_val']
	#!/usr/bin/env python
	from ete3 import Tree
	import random


	def delete_single_child_internal(t):
	"""Utility function that removes internal nodes
	with a single child from tree"""

	for node in t.traverse("postorder"):
	#!/usr/bin/env python
	from ete3 import Tree

	# pseudo code
	# binary rooted tree comparison
	def equals(tree1, tree2):

	if tree1 == tree2:
	return True
	# checking only leaf names
	<!doctype html>
	<html>
	<head>
	<meta charset="utf-8">
	<meta name="viewport" content="width=device-width, initial-scale=1.0, maximum-scale=1.0, user-scalable=no">

	<title>College made you dumber</title>

	<link rel="stylesheet" href="/static/css/reveal.css">
	<link rel="stylesheet" href="/static/css/theme/black.css">
	# modification of config created here: https://gist.github.com/cscorley/9144544
	try:
	from urllib.parse import quote # Py 3
	except ImportError:
	from urllib2 import quote # Py 2
	import os
	import sys
	from settings import template_path, template_file, build_dir, rel_img_path
	f = None
	for arg in sys.argv:
	from ete2 import PhyloNode, TreeStyle
	import sys
	if(len(sys.argv)<2):
	sys.exit("Usage : python disptree.py input output")
	else:
	inputfile, output = sys.argv[1], sys.argv[2]
	t = PhyloNode(inputfile)
	ts = TreeStyle()
	ts.show_branch_length = True
	ts.show_branch_support = True
	#!/usr/bin/env python
	import argparse
	from glob import glob
	import os
	try:
	from Bio.SeqRecord import SeqRecord
	from Bio import AlignIO
	from Bio.Align import MultipleSeqAlignment
	from Bio.Seq import Seq
	from Bio.Alphabet import generic_protein