Created
June 25, 2013 16:22
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.par file used to simulate reads
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| ################################################File locations | |
| REF_FILE_NAME Mus.gtf | |
| GEN_DIR genomes/mus/ | |
| ###################################################Expression | |
| NB_MOLECULES 5000000 | |
| TSS_MEAN 50 | |
| POLYA_SCALE 100 | |
| POLYA_SHAPE 1.5 | |
| EXPRESSION_K -0.1 | |
| EXPRESSION_X0 14500.0 | |
| EXPRESSION_X1 9.025E9 | |
| ###############################################Fragmentation | |
| FRAGMENTATION YES | |
| FRAG_SUBSTRATE RNA | |
| FRAG_METHOD UR | |
| FRAG_UR_ETA 350 | |
| FRAG_UR_D0 100 | |
| RTRANSCRIPTION YES | |
| RT_MOTIF default | |
| RT_PRIMER RH | |
| #########################################################PCR | |
| PCR_DISTRIBUTION default | |
| GC_MEAN NaN | |
| PCR_PROBABILITY 0.05 | |
| FILTERING YES | |
| SIZE_DISTRIBUTION N(400,100) | |
| #################################################Sequencing | |
| READ_NUMBER 60000000 | |
| READ_LENGTH 100 | |
| PAIRED_END YES | |
| FASTA YES | |
| GEN_DIR genomes/mus | |
| ERR_FILE 76 | |
| UNIQUE_IDS YES |
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