Created
June 25, 2013 16:26
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Run AllPathsLG error correction
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| #!/bin/bash | |
| ~/ErrorCorrectReads.pl \ | |
| MAX_MEMORY_GB= 30 THREADS= 8 PHRED_ENCODING= 33 PAIRED_READS_A_IN= \ | |
| PAIRED_READS_B_IN= UNPAIRED_READS_IN= sim.fastq \ | |
| FE_MAX_KMER_FREQ_TO_MARK= 0 EC_K= 24 HAPLOIDIFY= True FILL_FRAGMENTS= \ | |
| False FF_K=28 FE_USE_KMER_SPECTRUM=TRUE READS_OUT=corr |
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