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macmanes/rept.config.txt

Created June 25, 2013 16:28
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config file for running Reptile
Raw
rept.config.txt
InFaFile data/both.fa
IQFile data/both.q
OErrFile data/both.reptile.err
QFlag 1
IFlag 1
BatchSize 5000000
KmerLen 13
hd_max 1
Step 11
ExpectSearch 4
T_ratio 0.5
######## The following parameters need to be tuned to specific dataset ########
MaxErrRate 0.02
QThreshold 73
MaxBadQPerKmer 8
Qlb 66
T_expGoodCnt 112
T_card 6
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